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action potential terms should be obsoleted #1

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dosumis opened this issue May 12, 2015 · 3 comments
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action potential terms should be obsoleted #1

dosumis opened this issue May 12, 2015 · 3 comments
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@dosumis
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dosumis commented May 12, 2015

OBA action potential terms are incorrect. Action potential was originally treated as a quality in GO - probably becuase of a false analogy with membrane potential. It is now modelled as a process that regulates membrane potential. The result is that there are a set of terms in OBA whose names are duplicates of GO action potential terms. These OBA: terms should be obsoleted:

The terms action potential (OBA:0000012) and action potential (GO:0001508) share the name or synonym "action potential".
The terms atrial cardiac muscle cell action potential (GO:0086014) and atrial cardiac muscle cell action potential (OBA:0000019) share the name or synonym "atrial cardiac muscle cell action potential".
The terms AV node cardiac muscle cell action potential (OBA:0000002) and AV node cell action potential (GO:0086016) share the name or synonym "AV node cardiac muscle cell action potential".
AV node cell action potential (GO:0086016) generated 1 warning:
The terms bundle of His cell action potential (GO:0086043) and bundle of His cardiac muscle cell action potential (OBA:0000038) share the name or synonym "bundle of His cardiac muscle cell action potential".
The terms cardiac muscle cell action potential (OBA:0000044) and cardiac muscle cell action potential (GO:0086001) share the name or synonym "cardiac muscle cell action potential".

@cmungall
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Yep, they're already obsolete in oba-edit (as you surmised the original oba was in part reverse enginered from a much earlier go). Will make a new release

@cmungall
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Was in the release. Looks like a go pipeline issue...

@rays22
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rays22 commented Jul 15, 2022

I can confirm that the action potential terms

  • OBA:0000012
  • OBA:0000019
  • OBA:0000002
  • OBA:0000038
  • OBA:0000044

are obsolete in OBA.

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