Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

do we need a separate squamous bone? #122

Closed
mellybelly opened this issue Oct 8, 2012 · 3 comments
Closed

do we need a separate squamous bone? #122

mellybelly opened this issue Oct 8, 2012 · 3 comments
Labels

Comments

@mellybelly
Copy link
Member

We have UBERON:0001695 'squamous part of temporal bone' but not the separate class:

External def:
The squamosal bone is part of the dermatocranium in early tetrapods and becomes part of the mammalian occipital and temporal bones. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:An_Evolutionary_Perspective, Grande_L, Third_Edition(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.246, see_Liem_KF][VHOG]

Taxon notes:
The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles. Editor notes: consider separate class for squamosal

This should be reviewed and a separate class considered.

@cmungall
Copy link
Member

cmungall commented Oct 8, 2012

Be good to have Terry's input here. MA has squamosal bone, EMAPA has "squamous part"

@cmungall
Copy link
Member

cmungall commented Oct 9, 2012

Alternative: keep as one class. Make the primary label "squamous bone". Add taxon GCI for parthood relationships where the bone is part of another bone

@cmungall
Copy link
Member

we're currently treating as the same class, we'll keep this way for now

id: UBERON:0001695
name: squamous part of temporal bone
def: "A bone which is fused with the temporal bone in many mammals and forms part of the cheek region articulating with quadrate and pterygoid in other vertebrates." [https://github.com/obophenotype/uberon/issues/122, MP:0004423, Wikipedia:Squama_temporalis, Wikipedia:Squamosal_bone]
subset: pheno_slim
synonym: "os squamosum" EXACT LATIN []
synonym: "pars squamosa (os temporale)" EXACT []
synonym: "pars squamosa ossis temporalis" EXACT LATIN [FMA:52883, FMA:TA]
synonym: "squama" RELATED []
synonym: "squama temporalis" EXACT [Wikipedia:Squama_temporalis]
synonym: "squama temporalis" RELATED LATIN [Wikipedia:Squama_temporalis]
synonym: "squamosal" EXACT [AAO:0000574]
synonym: "squamosal bone" EXACT []
synonym: "squamosal bone" EXACT [https://github.com/obophenotype/uberon/issues/122, MA:0001473]
synonym: "squamosum" EXACT []
synonym: "squamous bone" EXACT [https://github.com/obophenotype/uberon/issues/122]
synonym: "temporal bone squamous part" EXACT [MP:0004423, VHOG:0001561]
xref: AAO:0000574
xref: EMAPA:18021
xref: FMA:52883
xref: MA:0001473
xref: SCTID:138672006
xref: VHOG:0001561
xref: Wikipedia:Squamosal_bone
is_a: UBERON:0002514 {source="EHDAA2-inferred"} ! intramembranous bone
relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone
relationship: develops_from UBERON:0010751 ! squamous part of temporal bone primordium
relationship: part_of UBERON:0001678 {notes="see comments"} ! temporal bone
relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium
relationship: part_of UBERON:0004339 {source="EHDAA2", source="PMID:11523816"} ! vault of skull
property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png xsd:anyURI
property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png xsd:anyURI
property_value: editor_note "consider separate class for squamosal OR making squamosal the primary label" xsd:string
property_value: external_definition "Paired, intramembranous bones that lie at the posterolateral margins of the skull. Lateral and dorsal to the quadrate.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000574", ontology="AAO", source="AAO:EJS"}
property_value: external_definition "The squamosal bone is part of the dermatocranium in early tetrapods and becomes part of the mammalian occipital and temporal bones. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.246, see_Liem_KF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001561", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: taxon_notes "The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles" xsd:string

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

2 participants