new term requests for RCN workshop

[cmungall]

(On behalf of Erik)

all terms >1000000
http://dl.dropbox.com/u/15088135/phenotype-rcn/rcn_anatomy_slim.obo

[cmungall]

Erik, can you add some definitions for these? Add the meeting ID as the xref for each (do we have this ID? Just use UBERON:phenotype_rcn_2012-02 for now.

I will add

subset: phenotype_rcn
subset: rcn_anatomy_slim

automatically.

why is the chin ventral margin a structure and a midline an organism subdivision? See if you can find more specific classes than anatomical structure.

[seger]

Here are the new terms with defs, xrefs, and hopefully more helpful classification.

[Term]
id: UBERON:1000000
name: chin ventral margin
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0008199 ! chin

[Term]
id: UBERON:1000001
name: collection of hair on vertex
def: "A collection of hairs that grows on the vertex (top of head)." [UBERON:EJS]
synonym: "collection of hair on cranium" RELATED []
synonym: "cranial hair" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0010164 ! collection of hairs
relationship: part_of UBERON:0000033 ! head

[Term]
id: UBERON:1000002
name: cranial midline area
def: "The middle part of the head, located approximately equidistant from the left and the right sides of the head." [UBERON:EJS]
synonym: "cranial midline" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head

[Term]
id: UBERON:1000003
name: dewlap
def: "A longitudinal flap of skin that hangs beneath the lower jaw or neck." [Wikipedia:Dewlap]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:1000004
name: collection of hair on ear
def: "A collection of hairs that grows on the external ear." [UBERON:EJS]
synonym: "external ear hair" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0010164 ! collection of hairs

[Term]
id: UBERON:1000005
name: external ear margin
def: "Subdivision of the head consisting of the area along the edge of the external ear." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:1000006
name: collection of hair on forehead
def: "A collection of hairs that grows on the forehead." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0010164 ! collection of hairs
relationship: part_of UBERON:0008200 ! forehead

[Term]
id: UBERON:1000007
name: forehead protuberance
def: "A bulge, knob, or swelling that protrudes from the forehead." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0008200 ! forehead

[Term]
id: UBERON:1000008
name: left part of face
def: "Subdivision of the head consisting of the left half of the face, vertically divided." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:1000009
name: midline crest
def: "A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head

[Term]
id: UBERON:1000010
name: mole
def: "A benign tumor on the skin, usually with darker pigment." [Wikipedia:Melanocytic_nevus]
synonym: "melanocytic nevus" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0000479 ! tissue

[Term]
id: UBERON:1000011
name: labial commissure
def: "Anatomical structure consisting of either corner of the mouth." [Wikipedia:Labial_commissure_of_mouth]
synonym: "corner of mouth" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0000165 ! mouth

[Term]
id: UBERON:1000012
name: nose anterior margin
def: "Subdivision of the head consisting of the area along the front edge of the external nose." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0007827 ! external nose

[Term]
id: UBERON:1000013
name: nose vertex
def: "The extreme point of curvature of the external nose." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0007827 ! external nose

[Term]
id: UBERON:1000014
name: right part of face
def: "Subdivision of the head consisting of the right half of the face, vertically divided." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001456 ! face

[Term]
id: UBERON:1000015
name: skin of snout
def: "A zone of skin that is part of the snout." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0006333 ! snout

[Term]
id: UBERON:1000016
name: tip of snout
def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the snout." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0006333 ! snout

[Term]
id: UBERON:1000017
name: tip of external ear
def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:1000018
name: cluster of hairs
def: "A small collection or tuft of hairs." [UBERON:EJS]
synonym: "tuft of hair" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0010164 ! collection of hairs

[Term]
id: UBERON:1000019
name: vertex
def: "The top of the head." [FMA:46484]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0001444 ! subdivision of head

[Term]
id: UBERON:1000020
name: collection of hair on snout
def: "A collection of hairs that grows on the snout." [UBERON:EJS]
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0010165 ! collection of hair on face
relationship: part_of UBERON:0006333 ! snout
created_by: eriks
creation_date: 2012-02-05T05:21:29Z

[Term]
id: UBERON:1000021
name: skin of face
def: "A zone of skin that is part of the face." [UBERON:EJS]
synonym: "facial skin" RELATED []
xref: UBERON:phenotype_rcn_2012-02
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0001456 ! face
created_by: eriks
creation_date: 2012-02-05T05:23:01Z

[seger]

In addition, we needed some synonyms for existing terms:

nose - related synonym of UBERON:0007827 ! external nose
mustache - exact synonym of UBERON:0010169 ! moustache
eye socket - related synonym of UBERON:0001697 ! orbit
jowl - braod synonym of UBERON:0001567 ! cheek
earlobe - exact synonym of UBERON:0001847 ! lobule of pinna

[cmungall]

FMA:46484 ! vertex - this is a point, not a subdivision. I changed UBERON:1000019 to "top of head"

Added terms (same IDs) and synonyms. In edit version on github - will make a release soon

[cmungall]

all terms added to release version