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rex_test <- RexProcess(HdxData = DataFrame(BRD4_apo),
params = rex_test,
range = 1:10,
thin = 1,
whichChains = c(1,2))`
Error in dimnames(x) <- dn :
length of 'dimnames' [2] not equal to array extent
This didn't seem to be a problem when running on a local PC, but when I compiled everything to run on hpc, I started getting this error. So wondering if it might be a version issue in one of my packages? I can provide the sessionInfo if that's useful. Manually working through RexProcess didn't seem to provide any clues because then the function worked.
The text was updated successfully, but these errors were encountered:
This one had been puzzling me for a while: RexProcess function will not work unless the starting residue is 1, giving the following error message:
`data("BRD4_apo")
BRD4_apo$Start <- BRD4_apo$Start + 10
BRD4_apo$End <- BRD4_apo$End + 10
BRD4_apo <- DataFrame(BRD4_apo)
BRD4_apo <- cleanHDX(res = BRD4_apo, clean = TRUE)
BRD4_apo <- data.frame(BRD4_apo) %>% filter(End < 100)
BRD4_apo <- DataFrame(BRD4_apo)
numTimepoints <- length(unique(BRD4_apo$Exposure))
Timepoints <- unique(BRD4_apo$Exposure)
numPeptides <- length(unique(BRD4_apo$Sequence))
set.seed(1)
rex_test <- rex(HdxData = BRD4_apo,
numIter = 10,
R = max(BRD4_apo$End),
density = "laplace",
numtimepoints = numTimepoints,
timepoints = Timepoints,
seed = 1L,
tCoef = c(0, rep(1, numTimepoints - 1)),
phi = 1,
BPPARAM = SerialParam())
rex_test <- RexProcess(HdxData = DataFrame(BRD4_apo),
params = rex_test,
range = 1:10,
thin = 1,
whichChains = c(1,2))`
Error in dimnames(x) <- dn :
length of 'dimnames' [2] not equal to array extent
This didn't seem to be a problem when running on a local PC, but when I compiled everything to run on hpc, I started getting this error. So wondering if it might be a version issue in one of my packages? I can provide the sessionInfo if that's useful. Manually working through RexProcess didn't seem to provide any clues because then the function worked.
The text was updated successfully, but these errors were encountered: