Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Feature request: VCF output #105

Open
pettyalex opened this issue Jul 18, 2024 · 0 comments · May be fixed by odelaneau/xcftools#10
Open

Feature request: VCF output #105

pettyalex opened this issue Jul 18, 2024 · 0 comments · May be fixed by odelaneau/xcftools#10

Comments

@pettyalex
Copy link

My group still works with many tools that cannot read in BCF and need .vcf.gz still.

Would it be possible to allow outputting VCF? It seems like right now, the only reason that we cannot output VCF is because of bugs in xcftools, specifically because odelaneau/xcftools@394bbaf is not released in 5.1.1 and there's a similar bug with the line

		} else if (hts_fname.size() > 5 && hts_fname.substr(hts_fname.size()-5) == "vcf.gz") {

because ".vcf.gz" is 6 characters, not 5.

Thoughts on VCF output?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant