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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: scir
Title: Analysis Toolkit Of Sci-RNA-seq Data
Version: 0.1.0
Authors@R:
person("Job", "van Riet", , "job.vanriet@dkfz.de", role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-7767-7923"))
Maintainer: Job van Riet <j.vanriet@dkfz.de>
Description: Contains various functions for analyzing sci-RNA-Seqv3 data
originating from the sci-rocket workflow.
License: GPL-3 + file LICENSE
BugReports: https://github.com/odomlab2/scir/issues
Depends:
R (>= 4.2)
Imports:
checkmate (>= 2.2.0),
data.table,
dplyr (>= 1.1.0),
futile.logger (>= 1.4.3),
future,
future.apply,
ggbeeswarm,
ggplot2 (>= 3.4.2),
ggtext,
glue,
Matrix,
monocle3 (>= 1.3.1),
patchwork,
plotly,
progressr,
readr,
rtracklayer,
S4Vectors,
scales,
Seurat,
SeuratObject,
stats,
SummarizedExperiment,
tibble,
tidyr
Suggests:
ggrepel,
knitr,
rmarkdown
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1