v0.1.14

0.1.14 — 2022-12-01

Performance

• Throw away some unnecessary parts of the cellpose post-proc pipeline that just brought overhead and did nothing.

Refactor

• Refactor the whole cellpose post-processing pipeline for readability.

• Refactored multiprocessing code to be reusable and moved it under utils.

Features

• Add exact euler integration (on CPU) for cellpose post-processing.

• added more pathos.Pool options for parallel processing. Added ThreadPool, ProcessPool & SerialPool

• add all the mapping methods for each Pool obj. I.e. amap, imap, uimap and map

v0.1.13

0.1.13 — 2022-11-25

Features

• Add option to return encoder features, and decoder features along the outputs in the forward pass of any model.

Fixes

• Turn the cellpose and stardist postproc dirs into modules.
  

v0.1.2

0.1.12 — 2022-11-03

Performance

• Reverse engineered the stardist post-processing pipeline to python. Accelerated it with Numba and optimized it even further. Now it runs almost 2x faster than the original C++ verion.

Fixes

• Fix bug with padding in SlidingWindowInferer
  

v0.1.11

0.1.11 — 2022-10-21

Removed

• unnecessary torchvision dependency

v0.1.10

0.1.10 — 2022-10-21

Removed

• torch-optimizer removed from the optional dependency list. Started to cause headache.

v0.1.9

0.1.9 — 2022-10-21

Refactor

• Moved saving utilities to FileHandler and updated tests.

Features

• Added geojson saving support for inference

v0.1.8

0.1.8 — 2022-10-18

Features

• Support to return all of the feature maps from each decoder stage.

• Add multi-gpu inference via DataParallel

v0.1.7

0.1.7 — 2022-10-15

Fixes

• Fix SCE loss bug.

v0.1.6

0.1.6 — 2022-10-14

Features

• Add a Wandb artifact table callback for loading a table of test data metrics and insights to wandb.

Fixes

• Symmetric CE loss fixed.

• Add option to return binary and instance labelled mask from the dataloader. Previously binary was returned with return_inst flag which was confusing.

• Fix the SegmentationExperiment to return preds and masks at test time.

v0.1.5

Wandb callback bug fixes.