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MachineLearningGWAS: Machine Learning for Genome-Wide Association Studies

Description

The MachineLearningGWAS R package implements machine learning tools for genome-wide association studies.

Installation

  • Install R and RStudio.

  • Install the caret R package with all its dependencies.

install.packages("caret", dependencies = TRUE)
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite()
  • Install the development version of MachineLearningGWAS from Github.
# install.packages("devtools")
devtools::install_github("olivmrtn/MachineLearningGWAS")
  • Load the package and you're good to go.
library(MachineLearningGWAS)

Usage

Read the vignette here.

Contact

License

MachineLearningGWAS 0.1.0 Copyright (C) 2016

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

The GNU General Public License is available at http://www.gnu.org/licenses/

The source code can be found at https://github.com/olivmrtn/MachineLearningGWAS