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dataset.cljc
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(ns milia.api.dataset
(:refer-clojure :exclude [clone update])
(:require [chimera.seq :refer [has-keys? in?]]
[chimera.core :refer [not-nil?]]
[chimera.string :refer [get-query-params-str]]
[clojure.string :refer [join split]]
[milia.api.http :refer [parse-http]]
[milia.utils.metadata :refer [metadata-files]]
[milia.utils.remote
:refer [make-j2x-url make-client-url make-url]]
#?@(:clj [[milia.api.io :refer [multipart-options]]
[milia.utils.file :as file-utils]
[milia.utils.metadata :refer [upload-metadata-file]]
[cheshire.core :refer [generate-string]]])))
(defmulti type->endpoint (fn [datatype & _] datatype))
(defmethod type->endpoint :default [_ & {:keys [async] :or {async true}}]
(if async "forms" "data"))
(defmethod type->endpoint :filtered-dataset [_ & _] "dataviews")
(defn all
"Return all the datasets for an account."
[username]
(let [url (make-url (str "forms.json?owner=" username))]
(parse-http :get url)))
(defn public
"Return all public datasets for a specific user."
[username]
(let [url (make-url "forms" (str username ".json"))]
(parse-http :get url)))
#?(:clj
(defn- send-file-or-params
"Send request with file or params"
[method url params suppress-4xx-exceptions?]
(let [options (if-let [xls_file (:xls_file params)]
(multipart-options xls_file "xls_file")
{:form-params params})]
(parse-http method url :http-options options
:suppress-4xx-exceptions? suppress-4xx-exceptions?))))
#?(:clj
(defn create
"Create a new dataset from a file."
([params]
(create params nil))
([params project-id]
(let [url (apply make-url (if project-id
["projects" project-id "forms.json"]
["forms.json"]))]
(send-file-or-params :post url params false)))))
#?(:clj
(defn patch
"Set the metadata for a dataset using PATCH. Only a subset of the
required parameters are needed."
[dataset-id params & {:keys [suppress-4xx-exceptions?]
:or {suppress-4xx-exceptions? true}}]
(let [url (make-url "forms" (str dataset-id ".json"))]
(send-file-or-params :patch url params suppress-4xx-exceptions?))))
(defn clone
"Clone the dataset given by ID into the account with the given username."
[dataset-id username & {:keys [project-id]}]
(let [url (make-url "forms" dataset-id "clone.json")
data-base {:form-params {:username username}}
data (if project-id
(assoc-in data-base [:form-params :project_id] project-id)
data-base)]
(parse-http :post url :http-options data :suppress-4xx-exceptions? true)))
(defn update
"Set the metadata for a dataset using PUT. All parameters must be passed."
[dataset-id params]
{:pre [(has-keys? params [:created_by
:description
:downloadable
:owner
:project
:public
:public_data
:title
:uuid])]}
(let [url (make-url "forms" (str dataset-id ".json"))]
(parse-http :put url :http-options {:form-params params})))
(defn update-form-name
"Update the title of a form"
[dataset-id params]
(let [url (make-url "forms" dataset-id)]
(parse-http :put url :http-options {:form-params params})))
(defn ^:export data
"Return the data associated with a dataset."
[dataset-id &
{:keys [format raw? must-revalidate? accept-header query-params
data-id auth-token] #?@(:cljs [:or {:format "json"}])}]
(let [dataset-suffix (if format
(str dataset-id (when data-id (str "/" data-id))
"." format)
dataset-id)
url (make-url "data" dataset-suffix)
options {:query-params query-params}]
(parse-http :get url
:http-options options
:raw-response? raw?
:must-revalidate? must-revalidate?
:accept-header accept-header
:auth-token auth-token)))
(defn record
"Retrieve a record from the dataset."
[dataset-id record-id]
(let [url (make-url "data" dataset-id (str record-id ".json"))]
(parse-http :get url)))
(defn tags
"Returns tags for a dataset"
[dataset-id]
(let [url (make-url "forms" dataset-id "labels.json")]
(parse-http :get url)))
(defn add-tags
"Add tags to a dataset"
[dataset-id tags]
(let [url (make-url "forms" dataset-id "labels.json")]
(parse-http :post url :http-options {:form-params tags})))
(defn filename-for-format
"Return filename taking format special cases into account."
[dataset-id format]
(str dataset-id "." (if (= format "csvzip") "zip" format)))
(defn- options-for-format
"Return options needed to handle format."
[format]
(if (in? ["csvzip" "sav" "xls" "xlsx" "zip"] format) {:as :byte-array} {}))
(defmulti type->download-path (fn [datatype & _] datatype))
(defmethod type->download-path :default
[_ dataset-id format export-options]
[(str dataset-id "." format
(when export-options
(str "?"
(join "&"
(for [[option val] export-options]
(str (name option) "=" val))))))])
(defmethod type->download-path :filtered-dataset
[_ dataset-id format export-options]
[dataset-id (str "data." format)])
#?(:clj
(defn download
"Download dataset in specified format."
[dataset-id format & [async data-type export-options]]
(let [options (options-for-format format)
endpoint (type->endpoint data-type :async async)
url (apply make-url
(cons endpoint
(type->download-path data-type
dataset-id
format
export-options)))
filename (filename-for-format dataset-id format)]
(parse-http :get url :http-options options :filename filename))))
(defn download-synchronously
"Download form data in specified format. The synchronicity here refers to the
server side. This will still return a channel, not data, in CLJS.
The options map (last parameter) has the following keys:
:accept-header Defaults to application/json
:submission-id The id of the submission whose data the client requires. The
function returns data for all submissions if this is not provided.
:dataview? Boolean flag indicating whether the data belongs to a filtered
dataview"
[dataset-id format
& {:keys [accept-header submission-id dataview?]}]
(let [url (cond
dataview? (make-url "dataviews" dataset-id (str "data." format))
submission-id (make-url "data"
dataset-id (str submission-id "." format))
:default (make-url "data" (str dataset-id "." format)))]
(parse-http :get url
:accept-header accept-header
:http-options (options-for-format format))))
(defn form
"Download form as JSON string or file in specified format if format passed."
([dataset-id]
(let [url (make-url "forms" dataset-id "form.json")]
(parse-http :get url)))
([dataset-id format]
(let [suffix (str "form." format)
options (options-for-format format)
url (make-url "forms" dataset-id suffix)
filename (str dataset-id "_" suffix)]
(parse-http :get url :http-options options :filename filename))))
(defn metadata
"Show dataset metadata."
[dataset-id & {:keys [no-cache?]}]
(let [url (make-url "forms" (str dataset-id ".json"))]
(parse-http :get url :no-cache? no-cache?)))
(defn online-data-entry-link
"Return link to online data entry."
[dataset-id]
(let [url (make-url "forms" dataset-id "enketo.json")]
#?(:clj
(parse-http :get url :suppress-4xx-exceptions? true)
:cljs
(parse-http :get url))))
(defn edit-link
"Return link to online data entry."
[username project-id dataset-id instance-id]
(let [return-url (make-client-url username
project-id
dataset-id
"submission-editing-complete")
url (make-url "data" dataset-id instance-id
(str "enketo.json?return_url=" return-url))]
(:url (parse-http :get url))))
(defn delete
"Delete a dataset by ID."
[dataset-id]
(let [url (make-url "forms" dataset-id "delete_async.json")]
(parse-http :delete url)))
(defn move-to-project
"Move a dataset to a project use account if no owner passed."
[dataset-id project-id]
(let [url (make-url "projects" project-id "forms.json")]
(parse-http :post url :http-options {:form-params {:formid dataset-id}})))
(defn new-form-owner
"Set a new form owner"
[dataset-id new-owner]
(let [url (make-url "forms" (str dataset-id ".json"))
new-owner (make-url "users" new-owner)]
(parse-http :patch url :http-options {:form-params {:owner new-owner}})))
(defn update-sharing
"Share dataset with specific user"
[dataset-id username role]
(let [url (make-url "forms" dataset-id "share.json")
data {:username username :role role}]
(parse-http :post url :http-options {:form-params data})))
#?(:clj
(defn upload-media
"Upload media for a form"
[datasetd-id media-file]
(let [url (make-url "metadata.json")
data-file (file-utils/uploaded->file media-file)
muiltipart [{:name "data_value"
:content (:filename media-file)}
{:name "data_type"
:content "media"}
{:name "xform"
:content datasetd-id}
{:name "data_file"
:content data-file}]]
(parse-http :post url
:http-options {:multipart muiltipart}
:suppress-4xx-exceptions? true))))
(defn link-xform-or-dataview-as-media
"Link xform or dataview as media"
[object-type object-id media-filename xform-id]
(let [url (make-url "metadata.json")
form-params {:data_type "media"
:data_value
(str (join " " [object-type object-id media-filename]))
:xform xform-id}]
(parse-http :post url
:http-options {:form-params form-params}
:suppress-4xx-exceptions? true)))
(defn add-xls-report
"Add xls report link to dataset"
[dataset-id uuid filename]
(let [xls-url (make-j2x-url "xls" uuid)
url (make-url "metadata.json")
data {:xform dataset-id
:data_type "external_export"
:data_value (str filename "|" xls-url)}]
(parse-http :post url :http-options {:form-params data})))
(defn download-xls-report
"Download xls report from the j2x service"
([dataset-id meta-id filename]
(download-xls-report dataset-id meta-id filename nil))
([dataset-id meta-id filename data-id]
(let [suffix (if data-id
(str dataset-id ".xls?meta=" meta-id "&data_id=" data-id)
(str dataset-id ".xls?meta=" meta-id))
url (make-url "forms" suffix)]
(parse-http :get
url
:http-options {:as :byte-array}
:as-map? true
:filename filename))))
(def file-ext-query-param-map {:csv "csv_file"
:xls "xls_file"
:xlsx "xls_file"})
(defn get-media-file-extension [filename]
(-> filename
(split #"\.")
peek))
#?(:clj
(defn file-import
"Import csv or xls file data to existing form"
[dataset-id {:keys [filename] :as media-file} & [overwrite?]]
(let [media-file-extension (get-media-file-extension filename)
url (make-url "forms"
dataset-id
(cond-> "import.json"
overwrite? (str "?overwrite=true")))
multipart (multipart-options media-file
(->> media-file-extension
keyword
(get file-ext-query-param-map)))]
(parse-http :post url :http-options multipart
:suppress-4xx-exceptions? true
:as-map? true))))
(defn edit-history
"Returns a submission's edit history"
[dataset-id instance-id]
(parse-http :get (make-url "data" dataset-id instance-id "history.json")))
#?(:clj
(defn upload-file
"Upload metadata file for a submission"
[submission-id file]
(upload-metadata-file "instance" submission-id file)))
(defn files
[instance-id project-id & {:keys [no-cache? dataset-id]}]
(let [extra-params (apply assoc {:project project-id}
[:xform dataset-id])]
(metadata-files :instance instance-id no-cache?
:extra-params extra-params)))
(defn update-xform-meta-permissions
"Integer Integer String String -> Channel HttpResponse"
[dataset-id metadata-id editor-meta-role dataentry-meta-role]
(parse-http
:put (make-url "metadata" (str metadata-id ".json"))
:http-options
{:form-params
{:data_type "xform_meta_perms"
:xform dataset-id
:data_value (str editor-meta-role "|" dataentry-meta-role)}}))
(defn create-xform-meta-permissions
"Integer String String -> Channel HttpResponse"
[dataset-id editor-meta-role dataentry-meta-role]
(parse-http
:post (make-url "metadata.json")
:http-options
{:form-params
{:data_type "xform_meta_perms"
:xform dataset-id
:data_value (str editor-meta-role "|" dataentry-meta-role)}}))
(defn create-submission-review
"Create a submission review"
[{:keys [status instance note]}]
(parse-http
:post (make-url "submissionreview.json")
:http-options
{:form-params
{:status status
:instance instance
:note note}}))
(defn create-multiple-submission-reviews
"Create a submission review"
[{:keys [status instances note]}]
(let [json-vec (mapv (fn [instance]
{:note note :status status :instance instance})
instances)]
(parse-http
:post (make-url "submissionreview.json")
:http-options
#?(:clj {:body
(generate-string json-vec)
:content-type :json})
#?(:cljs {:json-params json-vec}))))
(defn get-submission-review
"Get a submission review"
[submission-review-id]
(parse-http :get (make-url "submissionreview"
(str submission-review-id ".json"))))
(defn list-submission-reviews
"List a submission review"
[]
(parse-http :get (make-url "submissionreview.json")))
(defn update-submission-review
"Update a submission review"
[{:keys [submission-review-id status note]}]
(when (not-every? nil? [status note])
(parse-http
:patch (make-url "submissionreview" (str submission-review-id ".json"))
:http-options
{:form-params
(cond-> {}
(not-nil? status) (assoc :status status)
(not-nil? note) (assoc :note note))})))
(defn filter-submission-review-by-instance
[{:keys [instance status note]}]
(let [query-params-str
(get-query-params-str
(cond-> {}
(not-nil? instance) (assoc :instance instance)
(not-nil? status) (assoc :status status)
(not-nil? note) (assoc :note note)))]
(parse-http
:get (make-url (str "submissionreview.json" query-params-str)))))
(defn delete-submission-review
[instance]
(parse-http :delete (make-url "submissionreview" (str instance ".json"))))