examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb

{
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    "[![View notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)\n",
    "[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)\n",
    "[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)"
   ]
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  {
   "cell_type": "markdown",
   "id": "87ff1568",
   "metadata": {},
   "source": [
    "#### based on Figs. 1-5 from Abdul-Razzak and Ghan 2000 (JGR: Atmos.)  \"_A parameterization of aerosol activation: 2. Multiple aerosol types_\"\n",
    "http://doi.wiley.com/10.1029/1999JD901161"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "8f0dfc29-5a88-4d7f-bcc8-10df9185d386",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:10:26.301401Z",
     "start_time": "2024-02-01T07:10:26.295293Z"
    }
   },
   "outputs": [],
   "source": [
    "import sys\n",
    "if 'google.colab' in sys.modules:\n",
    "    !pip --quiet install open-atmos-jupyter-utils\n",
    "    from open_atmos_jupyter_utils import pip_install_on_colab\n",
    "    pip_install_on_colab('PySDM-examples')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "c000670c",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:11:41.551370Z",
     "start_time": "2024-02-01T07:11:41.548264Z"
    }
   },
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "from matplotlib import pyplot\n",
    "from open_atmos_jupyter_utils import show_plot\n",
    "from PySDM.physics import si\n",
    "\n",
    "from PySDM_examples.Abdul_Razzak_Ghan_2000.run_ARG_parcel import run_parcel\n",
    "from PySDM_examples.Abdul_Razzak_Ghan_2000 import data_from_ARG2000_paper as ARG_paper\n",
    "from PySDM_examples.Abdul_Razzak_Ghan_2000 import data_from_CloudMicrophysics_ARG as ARG_CMjl\n",
    "\n",
    "n_sd_per_mode = 10"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "2a21f4e9",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:10:50.590811Z",
     "start_time": "2024-02-01T07:10:28.013213Z"
    }
   },
   "outputs": [
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    {
     "data": {
      "text/plain": "HTML(value=\"<a href='./fig_1.pdf' target='_blank'>./fig_1.pdf</a><br>\")",
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   "source": [
    "N2 = np.linspace(100,5000,5) / si.cm**3\n",
    "AF_S = np.zeros((2,len(N2)))\n",
    "AF_V = np.zeros((2,len(N2)))\n",
    "AFerror = np.zeros(len(N2))\n",
    "\n",
    "w = 0.5 * si.m / si.s\n",
    "sol2 = 1.0 # 100% ammonium sulfate\n",
    "rad2 = 50.0 * si.nm\n",
    "\n",
    "for i,N2i in enumerate(N2):\n",
    "    output = run_parcel(w, sol2, N2i, rad2, n_sd_per_mode)\n",
    "    AF_S[:,i] = output.activated_fraction_S\n",
    "    AF_V[:,i] = output.activated_fraction_V\n",
    "    AFerror[i] = output.error[0]\n",
    "\n",
    "fig, ax = pyplot.subplots(1, 1, sharex=True, figsize=(6,3))\n",
    "ax.plot(ARG_paper.Fig1_N2_obs, ARG_paper.Fig1_AF_obs, \"ko\", label=\"ARG 2000 data\")\n",
    "ax.plot(ARG_paper.Fig1_N2_param, ARG_paper.Fig1_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "\n",
    "ax.plot(ARG_CMjl.Fig1_N2_param_jl, ARG_CMjl.Fig1_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "\n",
    "ax.errorbar(N2 * si.cm**3, AF_S[0,:], yerr=AFerror, fmt='o', capsize=4, label=\"PySDM, Scrit def\")\n",
    "ax.errorbar(N2 * si.cm**3, AF_V[0,:], yerr=AFerror, fmt='x', capsize=2, label=\"PySDM, Vcrit def\")\n",
    "ax.set_ylabel('Mode 1 Activated Fraction')\n",
    "ax.set_ylim([0,1.1])\n",
    "\n",
    "pyplot.xlabel('Mode 2 Aerosol Number (cm$^{-3}$)')\n",
    "pyplot.legend(loc=\"best\")\n",
    "show_plot(\"fig_1.pdf\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "2aa5322c",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:11:03.123232Z",
     "start_time": "2024-02-01T07:10:50.602973Z"
    }
   },
   "outputs": [
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     "data": {
      "text/plain": "HTML(value=\"<a href='./fig_2.pdf' target='_blank'>./fig_2.pdf</a><br>\")",
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       "version_major": 2,
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   ],
   "source": [
    "N2 = np.linspace(100,5000,5) / si.cm**3\n",
    "AF_S = np.zeros((2,len(N2)))\n",
    "AF_V = np.zeros((2,len(N2)))\n",
    "AFerror = np.zeros(len(N2))\n",
    "\n",
    "w = 0.5 * si.m / si.s\n",
    "sol2 = 0.1 # 10% ammonium sulfate, 90% insoluble\n",
    "rad2 = 50.0 * si.nm\n",
    "\n",
    "for i,N2i in enumerate(N2):\n",
    "    output = run_parcel(w, sol2, N2i, rad2, n_sd_per_mode)\n",
    "    AF_S[:,i] = output.activated_fraction_S\n",
    "    AF_V[:,i] = output.activated_fraction_V\n",
    "    AFerror[i] = output.error[0]\n",
    "\n",
    "fig, axes = pyplot.subplots(2, 1, sharex=True, figsize=(6,6))\n",
    "axes[0].plot(ARG_paper.Fig2a_N2_obs, ARG_paper.Fig2a_AF_obs, \"ko\", label=\"ARG 2000 data\")\n",
    "axes[0].plot(ARG_paper.Fig2a_N2_param, ARG_paper.Fig2a_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[0].plot(ARG_CMjl.Fig2_N2_param_jl, ARG_CMjl.Fig2a_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "axes[1].plot(ARG_paper.Fig2b_N2_obs, ARG_paper.Fig2b_AF_obs, \"ko\")\n",
    "axes[1].plot(ARG_paper.Fig2b_N2_param, ARG_paper.Fig2b_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[1].plot(ARG_CMjl.Fig2_N2_param_jl, ARG_CMjl.Fig2b_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "\n",
    "for i, ax in enumerate(axes):\n",
    "    ax.errorbar(N2 * si.cm**3, AF_S[i,:], yerr=AFerror, fmt='o', capsize=4, label=\"PySDM, Scrit def\")\n",
    "    ax.errorbar(N2 * si.cm**3, AF_V[i,:], yerr=AFerror, fmt='x', capsize=2, label=\"PySDM, Vcrit def\")\n",
    "    ax.set_ylabel(f'Mode {i+1} Activated Fraction')\n",
    "    ax.set_ylim([0,1.1])\n",
    "\n",
    "pyplot.xlabel('Mode 2 Aerosol Number (cm$^{-3}$)')\n",
    "axes[0].legend(loc=\"best\")\n",
    "show_plot(\"fig_2.pdf\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "9ca851f8",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:11:15.930401Z",
     "start_time": "2024-02-01T07:11:03.142130Z"
    }
   },
   "outputs": [
    {
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     "data": {
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   "source": [
    "sol2 = np.linspace(0.1,1,5) # X% ammonium sulfate, (1-X)% insoluble\n",
    "AF_S = np.zeros((2,len(sol2)))\n",
    "AF_V = np.zeros((2,len(sol2)))\n",
    "AFerror = np.zeros(len(sol2))\n",
    "\n",
    "w = 0.5 * si.m / si.s\n",
    "N2 = 100 / si.cm**3\n",
    "rad2 = 50.0 * si.nm\n",
    "\n",
    "for i,sol2i in enumerate(sol2):\n",
    "    output = run_parcel(w, sol2i, N2, rad2, n_sd_per_mode)\n",
    "    AF_S[:,i] = output.activated_fraction_S\n",
    "    AF_V[:,i] = output.activated_fraction_V\n",
    "    AFerror[i] = output.error[0]\n",
    "\n",
    "fig, axes = pyplot.subplots(2, 1, sharex=True, figsize=(6,6))\n",
    "axes[0].plot(ARG_paper.Fig3a_sol2_obs, ARG_paper.Fig3a_AF_obs, \"ko\", label=\"ARG 2000 data\")\n",
    "axes[0].plot(ARG_paper.Fig3a_sol2_param, ARG_paper.Fig3a_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[0].plot(ARG_CMjl.Fig3_sol2_param_jl, ARG_CMjl.Fig3a_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "axes[1].plot(ARG_paper.Fig3b_sol2_obs, ARG_paper.Fig3b_AF_obs, \"ko\")\n",
    "axes[1].plot(ARG_paper.Fig3b_sol2_param, ARG_paper.Fig3b_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[1].plot(ARG_CMjl.Fig3_sol2_param_jl, ARG_CMjl.Fig3b_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "\n",
    "for i, ax in enumerate(axes):\n",
    "    ax.errorbar(sol2, AF_S[i,:], yerr=AFerror, fmt='o', capsize=4, label=\"PySDM, Scrit def\")\n",
    "    ax.errorbar(sol2, AF_V[i,:], yerr=AFerror, fmt='x', capsize=2, label=\"PySDM, Vcrit def\")\n",
    "    ax.set_ylabel(f'Mode {i+1} Activated Fraction')\n",
    "    ax.set_ylim([0,1.1])\n",
    "\n",
    "pyplot.xlabel('Mode 2 Soluble Mass Fraction')\n",
    "axes[0].legend(loc=\"best\")\n",
    "show_plot(\"fig_3.pdf\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "60e22fd9",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:11:28.980772Z",
     "start_time": "2024-02-01T07:11:15.942137Z"
    }
   },
   "outputs": [
    {
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   "source": [
    "rad2 = np.geomspace(10,500,5) * si.nm\n",
    "AF_S = np.zeros((2,len(rad2)))\n",
    "AF_V = np.zeros((2,len(rad2)))\n",
    "AFerror = np.zeros(len(rad2))\n",
    "\n",
    "w = 0.5 * si.m / si.s\n",
    "N2 = 100 / si.cm**3\n",
    "sol2 = 1 # 100% ammonium sulfate\n",
    "\n",
    "for i,rad2i in enumerate(rad2):\n",
    "    output = run_parcel(w, sol2, N2, rad2i, n_sd_per_mode)\n",
    "    AF_S[:,i] = output.activated_fraction_S\n",
    "    AF_V[:,i] = output.activated_fraction_V\n",
    "    AFerror[i] = output.error[0]\n",
    "\n",
    "fig, axes = pyplot.subplots(2, 1, sharex=True, figsize=(6,6))\n",
    "axes[0].plot(np.asarray(ARG_paper.Fig4a_rad2_obs)*1e3, ARG_paper.Fig4a_AF_obs, \"ko\", label=\"ARG 2000 data\")\n",
    "axes[0].plot(np.asarray(ARG_paper.Fig4a_rad2_param)*1e3, ARG_paper.Fig4a_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[0].plot(np.asarray(ARG_CMjl.Fig4_rad2_param_jl)*1e3, ARG_CMjl.Fig4a_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "axes[1].plot(np.asarray(ARG_paper.Fig4b_rad2_obs)*1e3, ARG_paper.Fig4b_AF_obs, \"ko\")\n",
    "axes[1].plot(np.asarray(ARG_paper.Fig4b_rad2_param)*1e3, ARG_paper.Fig4b_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[1].plot(np.asarray(ARG_CMjl.Fig4_rad2_param_jl)*1e3, ARG_CMjl.Fig4b_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "\n",
    "for i, ax in enumerate(axes):\n",
    "    ax.errorbar(rad2 / si.nm, AF_S[i,:], yerr=AFerror, fmt='o', capsize=4, label=\"PySDM, Scrit def\")\n",
    "    ax.errorbar(rad2 / si.nm, AF_V[i,:], yerr=AFerror, fmt='x', capsize=2, label=\"PySDM, Vcrit def\")\n",
    "    ax.set_ylabel(f'Mode {i+1} Activated Fraction')\n",
    "    ax.set_ylim([0,1.1])\n",
    "    ax.set_xscale('log')\n",
    "    ax.set_xlim([10,1000])\n",
    "\n",
    "pyplot.xlabel('Mode 2 Radius (nm)')\n",
    "axes[0].legend(loc=\"best\")\n",
    "show_plot(\"fig_4.pdf\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "2ae85602",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2024-02-01T07:11:41.540705Z",
     "start_time": "2024-02-01T07:11:28.998583Z"
    }
   },
   "outputs": [
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   "source": [
    "w = np.geomspace(0.01, 5, 5) * si.m / si.s\n",
    "AF_S = np.zeros((2,len(w)))\n",
    "AF_V = np.zeros((2,len(w)))\n",
    "AFerror = np.zeros(len(w))\n",
    "\n",
    "N2 = 100 / si.cm**3\n",
    "rad2 = 50.0 * si.nm\n",
    "sol2 = 0.1 # 10% ammonium sulfate; 90% insoluble\n",
    "\n",
    "for i,wi in enumerate(w):\n",
    "    output = run_parcel(wi, sol2, N2, rad2, n_sd_per_mode)\n",
    "    AF_S[:,i] = output.activated_fraction_S\n",
    "    AF_V[:,i] = output.activated_fraction_V\n",
    "    AFerror[i] = output.error[0]\n",
    "\n",
    "fig, axes = pyplot.subplots(2, 1, sharex=True, figsize=(6,6))\n",
    "axes[0].plot(ARG_paper.Fig5a_w_obs, ARG_paper.Fig5a_AF_obs, \"ko\", label=\"ARG 2000 data\")\n",
    "axes[0].plot(ARG_paper.Fig5a_w_param, ARG_paper.Fig5a_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[0].plot(ARG_CMjl.Fig5_w_param_jl, ARG_CMjl.Fig5a_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "axes[1].plot(ARG_paper.Fig5b_w_obs, ARG_paper.Fig5b_AF_obs, \"ko\")\n",
    "axes[1].plot(ARG_paper.Fig5b_w_param, ARG_paper.Fig5b_AF_param, \"k-\", label=\"ARG 2000 param\")\n",
    "axes[1].plot(ARG_CMjl.Fig5_w_param_jl, ARG_CMjl.Fig5b_AF_param_jl_B, \"k--\", label=\"CloudMicrophysics.jl param (B)\")\n",
    "\n",
    "for i, ax in enumerate(axes):\n",
    "    ax.errorbar(w, AF_S[i,:], yerr=AFerror, fmt='o', capsize=4, label=\"PySDM, Scrit def\")\n",
    "    ax.errorbar(w, AF_V[i,:], yerr=AFerror, fmt='x', capsize=2, label=\"PySDM, Vcrit def\")\n",
    "    ax.set_ylabel(f'Mode {i+1} Activated Fraction')\n",
    "    ax.set_ylim([0,1.1])\n",
    "    ax.set_xscale('log')\n",
    "    ax.set_xlim([0.01, 10])\n",
    "\n",
    "pyplot.xlabel('Updraft velocity (m/s)')\n",
    "axes[0].legend(loc=\"best\")\n",
    "show_plot(\"fig_5.pdf\")"
   ]
  }
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