- Add support for the OSQP and COIN-OR CBC solvers (#946)
- Fix the
Reaction.compartments
attribute not updating after metabolite changes (#1055) - Lots of syntax, annotation, and docstring fixes (#1058, #1059, #1060, #1063, #1065, #1066, #1076, #1077, #1080)
- Multiprocessing on windows now sends data to processes via a pickle file which should speed up any multiprocessing initialization (#1070)
- Upgrade optlang and fix some tolerance issues (#1011)
- Enable Python 3.9 (#1082)
- Document boundary reactions (#1038)
- Documentation is now built again on each release (#1047)
- Clarify pfba in the documentation (#1049)
- COBRApy source code releases are now deposited on Zenodo which provides a citeable DOI (#1061)
- COBRApy creates automatic releases to BioSimulators (#1064)
- Fix deployment of releases to the website (#1068)
- Improve the
pyproject.toml
config (#1067)
- Remove some particular
cobra.Reaction.lower_bound
and.upper_bound
behaviour that has been deprecated for a long time.