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simulation.h
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/
simulation.h
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/*******************************************************************************
Copyright (C) The University of Auckland
OpenCOR is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OpenCOR is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*******************************************************************************/
//==============================================================================
// Simulation
//==============================================================================
#pragma once
//==============================================================================
#include "datastoreinterface.h"
#include "simulationsupportglobal.h"
#include "solverinterface.h"
//==============================================================================
namespace OpenCOR {
//==============================================================================
namespace CellMLSupport {
class CellmlFile;
class CellmlFileRuntime;
} // namespace CellMLSupport
//==============================================================================
namespace COMBINESupport {
class CombineArchive;
} // namespace COMBINESupport
//==============================================================================
namespace SEDMLSupport {
class SedmlFile;
} // namespace SEDMLSupport
//==============================================================================
namespace SimulationSupport {
//==============================================================================
class Simulation;
class SimulationWorker;
//==============================================================================
class SIMULATIONSUPPORT_EXPORT SimulationData : public QObject
{
Q_OBJECT
public:
explicit SimulationData(Simulation *pSimulation);
~SimulationData();
void reload();
Simulation * simulation() const;
double * constants() const;
double * rates() const;
double * states() const;
double * algebraic() const;
int delay() const;
void setDelay(const int &pDelay);
double startingPoint() const;
void setStartingPoint(const double &pStartingPoint,
const bool &pRecompute = true);
double endingPoint() const;
void setEndingPoint(const double &pEndingPoint);
double pointInterval() const;
void setPointInterval(const double &pPointInterval);
SolverInterface * odeSolverInterface() const;
QString odeSolverName() const;
void setOdeSolverName(const QString &pOdeSolverName);
Solver::Solver::Properties odeSolverProperties() const;
void addOdeSolverProperty(const QString &pName, const QVariant &pValue);
SolverInterface * nlaSolverInterface() const;
QString nlaSolverName() const;
void setNlaSolverName(const QString &pNlaSolverName,
const bool &pReset = true);
Solver::Solver::Properties nlaSolverProperties() const;
void addNlaSolverProperty(const QString &pName, const QVariant &pValue,
const bool &pReset = true);
void reset(const bool &pInitialize = true);
void recomputeComputedConstantsAndVariables(const double &pCurrentPoint,
const bool &pInitialize);
void recomputeVariables(const double &pCurrentPoint);
bool isModified() const;
void checkForModifications();
private:
Simulation *mSimulation;
int mDelay;
double mStartingPoint;
double mEndingPoint;
double mPointInterval;
QString mOdeSolverName;
Solver::Solver::Properties mOdeSolverProperties;
QString mDaeSolverName;
Solver::Solver::Properties mDaeSolverProperties;
QString mNlaSolverName;
Solver::Solver::Properties mNlaSolverProperties;
double *mConstants;
double *mRates;
double *mStates;
double *mDummyStates;
double *mAlgebraic;
double *mInitialConstants;
double *mInitialStates;
void createArrays();
void deleteArrays();
SolverInterface * solverInterface(const QString &pSolverName) const;
signals:
void updated(const double &pCurrentPoint);
void modified(const bool &pIsModified);
void error(const QString &pMessage);
};
//==============================================================================
class SIMULATIONSUPPORT_EXPORT SimulationResults : public QObject
{
Q_OBJECT
public:
explicit SimulationResults(Simulation *pSimulation);
~SimulationResults();
void reload();
bool reset(const bool &pCreateDataStore = true);
void addPoint(const double &pPoint);
quint64 size() const;
DataStore::DataStore * dataStore() const;
double * points() const;
double * constants(const int &pIndex) const;
double * rates(const int &pIndex) const;
double * states(const int &pIndex) const;
double * algebraic(const int &pIndex) const;
private:
Simulation *mSimulation;
DataStore::DataStore *mDataStore;
DataStore::DataStoreVariable *mPoints;
DataStore::DataStoreVariables mConstants;
DataStore::DataStoreVariables mRates;
DataStore::DataStoreVariables mStates;
DataStore::DataStoreVariables mAlgebraic;
bool createDataStore();
void deleteDataStore();
QString uri(const QStringList &pComponentHierarchy, const QString &pName);
};
//==============================================================================
class SIMULATIONSUPPORT_EXPORT Simulation : public QObject
{
Q_OBJECT
public:
enum FileType {
CellmlFile,
SedmlFile,
CombineArchive
};
explicit Simulation(const QString &pFileName);
~Simulation();
QString fileName() const;
void save();
void reload();
void rename(const QString &pFileName);
CellMLSupport::CellmlFileRuntime * runtime() const;
Simulation::FileType fileType() const;
CellMLSupport::CellmlFile * cellmlFile() const;
SEDMLSupport::SedmlFile * sedmlFile() const;
COMBINESupport::CombineArchive * combineArchive() const;
SimulationData * data() const;
SimulationResults * results() const;
bool isRunning() const;
bool isPaused() const;
double currentPoint() const;
int delay() const;
void setDelay(const int &pDelay);
double size();
bool run();
bool pause();
bool resume();
bool stop();
bool reset();
private:
QString mFileName;
FileType mFileType;
CellMLSupport::CellmlFile *mCellmlFile;
SEDMLSupport::SedmlFile *mSedmlFile;
COMBINESupport::CombineArchive *mCombineArchive;
CellMLSupport::CellmlFileRuntime *mRuntime;
SimulationWorker *mWorker;
SimulationData *mData;
SimulationResults *mResults;
void retrieveFileDetails();
bool simulationSettingsOk(const bool &pEmitSignal = true);
signals:
void running(const bool &pIsResuming);
void paused();
void stopped(const qint64 &pElapsedTime);
void error(const QString &pMessage);
};
//==============================================================================
} // namespace SimulationSupport
} // namespace OpenCOR
//==============================================================================
// End of file
//==============================================================================