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@mikemhenry this might be a fairly well defined issue, and there's plenty of examples of how to do this for rdkit molecules in the lomap repo (or elsewhere)
Essentially we'd want our own version of what perses does here: https://github.com/choderalab/perses/blob/a8b490af0e4682082dfa442717ef45c1bd61f538/perses/rjmc/atom_mapping.py#L183-L310
See here for perses notebook: https://github.com/choderalab/perses/blob/master/examples/atom-mapping/Atom-mapping.ipynb
Use case: "I'm sitting in a notebook and I want to cycle through my atom map and see what's going on in each edge".
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