/
test_api.py
824 lines (705 loc) · 31.9 KB
/
test_api.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
"""
Tests for the OPAL API
"""
import json
from datetime import date, timedelta, datetime
from django.utils import timezone
from django.contrib.auth.models import User
from django.test import TestCase
from django.db import DataError
from django.http import Http404
from django.contrib.contenttypes.models import ContentType
from mock import patch, MagicMock
from rest_framework.test import APIClient
from rest_framework.reverse import reverse
from rest_framework import status
from opal import models
from opal.tests.models import Colour, PatientColour, HatWearer, Hat, Demographics
from opal.core import metadata
from opal.core.test import OpalTestCase
from opal.core.views import json_response
from opal.core.exceptions import APIError
# this is used just to import the class for
# EpisodeListApiTestCase and OptionsViewSetTestCase
from opal.tests.test_patient_lists import TaggingTestPatientList # flake8: noqa
from opal.core import api
class LoginRequredTestCase(OpalTestCase):
"""
we expect almost all views to 401
"""
def setUp(self):
self.patient, self.episode = self.new_patient_and_episode_please()
self.request = self.rf.get("/")
self.hat_wearer = HatWearer.objects.create(episode=self.episode)
def get_urls(self):
return [
reverse('record-list', request=self.request),
reverse('extract-schema-list', request=self.request),
reverse('referencedata-list', request=self.request),
reverse('metadata-list', request=self.request),
reverse('episode-list', request=self.request),
reverse('userprofile-list', request=self.request),
reverse(
'patient-detail',
kwargs=dict(pk=self.patient.id),
request=self.request
),
reverse(
'hat_wearer-detail',
kwargs=dict(pk=self.hat_wearer.id),
request=self.request
)
]
def test_403(self):
for url in self.get_urls():
response = self.client.get(url)
self.assertEqual(
response.status_code,
status.HTTP_403_FORBIDDEN
)
class TestDecorators(OpalTestCase):
def test_patient_from_pk(self):
patient, _ = self.new_patient_and_episode_please()
some_func = MagicMock()
request = MagicMock()
some_self = MagicMock()
decorated = api.patient_from_pk(some_func)
decorated(some_self, request, patient.id)
some_func.assert_called_once_with(some_self, request, patient)
def test_no_patient_exists_exception(self):
self.assertEqual(models.Patient.objects.count(), 0)
with self.assertRaises(Http404) as e:
some_func = MagicMock()
request = MagicMock()
some_self = MagicMock()
decorated = api.patient_from_pk(some_func)
decorated(some_self, request, 1)
self.assertEqual(
str(e.exception),
"No Patient matches the given query."
)
class OPALRouterTestCase(TestCase):
def test_default_base_name(self):
class ViewSet:
base_name = 'the name'
self.assertEqual(api.OPALRouter().get_default_base_name(ViewSet), 'the name')
def test_default_base_name_unset(self):
class ColourViewSet:
queryset = Colour.objects.all()
self.assertEqual(api.OPALRouter().get_default_base_name(ColourViewSet), 'colour')
class RecordTestCase(TestCase):
@patch('opal.core.api.schemas')
def test_records(self, schemas):
schemas.list_records.return_value = [{}]
self.assertEqual([{}], api.RecordViewSet().list(None).data)
class ExtractSchemaTestCase(TestCase):
@patch('opal.core.api.schemas')
def test_records(self, schemas):
schemas.extract_schema.return_value = [{}]
self.assertEqual([{}], api.ExtractSchemaViewSet().list(None).data)
class ReferenceDataViewSetTestCase(OpalTestCase):
def setUp(self):
self.top = Hat.objects.create(name="top")
self.bowler = Hat.objects.create(name="bowler")
self.synonym_name = "high"
self.user = User.objects.create(username='testuser')
content_type = ContentType.objects.get_for_model(Hat)
models.Synonym.objects.get_or_create(
content_type=content_type,
object_id=self.top.id,
name=self.synonym_name
)
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
self.request = mock_request
self.viewset = api.ReferenceDataViewSet()
self.viewset.request = mock_request
def test_list(self):
self.response = self.viewset.list(self.request)
result = self.response.data
self.assertIn("hat", result)
self.assertEqual(set(result["hat"]), {"top", "bowler", "high"})
self.assertEqual(self.response.status_code, 200)
def test_get(self):
response = self.viewset.retrieve(self.request, pk='hat')
self.assertEqual(set(response.data), {"top", "bowler", "high"})
self.assertEqual(response.status_code, 200)
def test_get_does_not_exist(self):
response = self.viewset.retrieve(self.request, pk='notalookuplist')
self.assertEqual(response.status_code, 404)
class MetadataViewSetTestCase(OpalTestCase):
def test_list(self):
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
response = api.MetadataViewSet().list(mock_request)
self.assertEqual(200, response.status_code)
for s in metadata.Metadata.list():
for key, value in s.to_dict(user=self.user).items():
self.assertEqual(response.data[key], value)
def test_retrieve(self):
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
response = api.MetadataViewSet().retrieve(mock_request, pk='macros')
self.assertEqual(200, response.status_code)
self.assertIn('macros', response.data)
def test_retrieve_nonexistent_metadata(self):
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
response = api.MetadataViewSet().retrieve(mock_request, pk='notarealmetadata')
self.assertEqual(404, response.status_code)
class SubrecordTestCase(OpalTestCase):
def setUp(self):
self.patient, self.episode = self.new_patient_and_episode_please()
class OurViewSet(api.SubrecordViewSet):
base_name = 'colour'
model = Colour
class OurPatientViewSet(api.SubrecordViewSet):
base_name = 'patientcolour'
model = PatientColour
self.model = Colour
self.viewset = OurViewSet
self.patientviewset = OurPatientViewSet
self.assertTrue(
self.client.login(
username=self.user.username, password=self.PASSWORD
)
)
def test_list(self):
response = self.viewset().list(None)
self.assertEqual([], json.loads(response.content.decode('UTF-8')))
def test_list_with_some_contents(self):
c1 = Colour(name="blue", episode=self.episode).save()
c2 = Colour(name="red", episode=self.episode).save()
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
response = self.viewset().list(mock_request)
data = [
{
u'consistency_token': u'',
u'created': None,
u'created_by_id': None,
u'episode_id': 1,
u'id': 1,
u'name': u'blue',
u'updated': None,
u'updated_by_id': None
},
{
u'consistency_token': u'',
u'created': None,
u'created_by_id': None,
u'episode_id': 1,
u'id': 2,
u'name': u'red',
u'updated': None,
u'updated_by_id': None
}
]
self.assertEqual(data, json.loads(response.content.decode('UTF-8')))
def test_create(self):
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
mock_request.data = {'name': 'blue', 'episode_id': self.episode.pk}
response = self.viewset().create(mock_request)
colour = Colour.objects.get()
self.assertEqual(date.today(), colour.created.date())
self.assertEqual(self.user, colour.created_by)
self.assertIsNone(colour.updated)
self.assertIsNone(colour.updated_by)
self.assertEqual('blue', json.loads(response.content.decode('UTF-8'))['name'])
def test_create_patient_subrecord(self):
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
mock_request.data = {'name': 'blue', 'episode_id': self.episode.pk,
'patient_id': self.patient.pk}
response = self.patientviewset().create(mock_request)
self.assertEqual('blue', json.loads(response.content.decode('UTF-8'))['name'])
def test_create_nonexistant_episode(self):
mock_request = MagicMock(name='mock request')
mock_request.data = {'name': 'blue', 'episode_id': 56785}
mock_request.user = self.user
response = self.viewset().create(mock_request)
self.assertEqual(400, response.status_code)
def test_create_unexpected_field(self):
data = {'name': 'blue', 'hue': 'enabled', 'episode_id': self.episode.pk}
request = self.rf.get("/")
url = reverse("colour-list", request=request)
with self.assertRaises(APIError) as e:
response = self.client.post(url, data=data)
def test_retrieve(self):
with patch.object(self.model.objects, 'get') as mockget:
mockget.return_value.to_dict.return_value = 'serialized colour'
response = self.viewset().retrieve(MagicMock(name='request'), pk=1)
self.assertEqual('serialized colour', response.data)
def test_update(self):
created = timezone.now() - timedelta(1)
colour = Colour.objects.create(
name='blue',
episode=self.episode,
created_by=self.user,
created=created,
)
mock_request = MagicMock(name='mock request')
mock_request.data = {
'name': 'green',
'episode_id': self.episode.pk,
'id': colour.pk,
'consistency_token': colour.consistency_token,
}
mock_request.user = self.user
response = self.viewset().update(mock_request, pk=colour.pk)
updated_colour = Colour.objects.get()
self.assertEqual(created, updated_colour.created)
self.assertEqual(self.user, updated_colour.created_by)
self.assertEqual(date.today(), updated_colour.updated.date())
self.assertEqual(202, response.status_code)
self.assertEqual('green', json.loads(response.content.decode('UTF-8'))['name'])
def test_update_item_changed(self):
created = timezone.now() - timedelta(1)
colour = Colour.objects.create(
name='blue',
episode=self.episode,
consistency_token='frist',
created_by=self.user,
created=created,
)
mock_request = MagicMock(name='mock request')
mock_request.data = {
'name': 'green',
'episode_id': self.episode.pk,
'id': colour.pk,
'consistency_token': 'wat'
}
mock_request.user = self.user
response = self.viewset().update(mock_request, pk=colour.pk)
colour = Colour.objects.get()
self.assertEqual(created, colour.created)
self.assertEqual(self.user, colour.created_by)
self.assertIsNone(colour.updated)
self.assertIsNone(colour.updated_by)
self.assertEqual(409, response.status_code)
def test_update_nonexistent(self):
response = self.viewset().update(MagicMock(), pk=67757)
self.assertEqual(404, response.status_code)
def test_update_unexpected_field(self):
colour = Colour.objects.create(name='blue', episode=self.episode)
mock_request = MagicMock(name='mock request')
mock_request.data = {
'name' : 'green',
'hue' : 'sea',
'episode_id' : self.episode.pk,
'id' : colour.pk,
'consistency_token': colour.consistency_token
}
mock_request.user = self.user
response = self.viewset().update(mock_request, pk=colour.pk)
self.assertEqual(400, response.status_code)
def test_delete(self):
colour = Colour.objects.create(episode=self.episode)
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
response = self.viewset().destroy(mock_request, pk=colour.pk)
self.assertEqual(202, response.status_code)
with self.assertRaises(Colour.DoesNotExist):
c2 = Colour.objects.get(pk=colour.pk)
def test_delete_nonexistent(self):
response = self.viewset().destroy(MagicMock(name='request'), pk=567)
self.assertEqual(404, response.status_code)
class ManyToManyTestSubrecordWithLookupListTest(TestCase):
def setUp(self):
self.patient = models.Patient.objects.create()
self.episode = models.Episode.objects.create(patient=self.patient)
self.user = User.objects.create(username='testuser')
class ManyToManyViewSet(api.SubrecordViewSet):
base_name = 'hatwearer'
model = HatWearer
self.model = HatWearer
self.viewset = ManyToManyViewSet
self.bowler = Hat.objects.create(name="bowler")
self.top = Hat.objects.create(name="top")
self.synonym_name = "high"
content_type = ContentType.objects.get_for_model(Hat)
models.Synonym.objects.get_or_create(
content_type=content_type,
object_id=self.top.id,
name=self.synonym_name
)
def create_hat_wearer(self, *hats):
hat_wearer = HatWearer.objects.create(
episode=self.episode,
name="Jane"
)
hat_wearer.hats.add(*hats)
return hat_wearer
def create_mock_request(self, **kwargs):
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
mock_request.data = {
'name': 'Jane',
'episode_id': self.episode.id,
}
mock_request.data.update(kwargs)
return mock_request
def test_many_to_many_create(self):
mock_request = self.create_mock_request(
hats=[self.bowler.name, self.top.name]
)
self.viewset().create(mock_request)
hat_wearer = HatWearer.objects.get(name="Jane")
self.assertEqual(hat_wearer.episode.id, self.episode.id)
self.assertEqual(list(hat_wearer.hats.all()), [self.bowler, self.top])
def test_many_to_many_synonym_create(self):
mock_request = self.create_mock_request(
hats=[self.synonym_name]
)
self.viewset().create(mock_request)
hat_wearer = HatWearer.objects.get(name="Jane")
self.assertEqual(hat_wearer.episode.id, self.episode.id)
self.assertEqual(list(hat_wearer.hats.all()), [self.top])
def test_many_to_many_synonym_create_unique(self):
mock_request = self.create_mock_request(
hats=[self.synonym_name, self.top.name]
)
self.viewset().create(mock_request)
hat_wearer = HatWearer.objects.get(name="Jane")
self.assertEqual(hat_wearer.episode.id, self.episode.id)
self.assertEqual(list(hat_wearer.hats.all()), [self.top])
def test_many_to_many_update_add(self):
hat_wearer = self.create_hat_wearer(self.bowler)
mock_request = self.create_mock_request(
hats=[self.bowler.name, self.top.name],
consistency_token='wat',
id=hat_wearer.id
)
self.viewset().update(mock_request, pk=hat_wearer.pk)
hat_wearer = HatWearer.objects.get(name="Jane")
self.assertEqual(hat_wearer.episode.id, self.episode.id)
self.assertEqual(list(hat_wearer.hats.all()), [self.bowler, self.top])
def test_many_to_many_update_synonym(self):
hat_wearer = self.create_hat_wearer(self.bowler)
mock_request = self.create_mock_request(
hats=[self.bowler.name, self.synonym_name],
consistency_token='wat',
id=hat_wearer.id
)
self.viewset().update(mock_request, pk=hat_wearer.pk)
hat_wearer = HatWearer.objects.get(name="Jane")
self.assertEqual(hat_wearer.episode.id, self.episode.id)
self.assertEqual(list(hat_wearer.hats.all()), [self.bowler, self.top])
def test_many_to_many_update_delete(self):
hat_wearer = self.create_hat_wearer(self.bowler)
mock_request = self.create_mock_request(
hats=[self.bowler.name],
id=hat_wearer.id
)
self.viewset().update(mock_request, pk=hat_wearer.pk)
hat_wearer = HatWearer.objects.get(name="Jane")
self.assertEqual(hat_wearer.episode.id, self.episode.id)
self.assertEqual(list(hat_wearer.hats.all()), [self.bowler])
def test_normal_delete(self):
hat_wearer = self.create_hat_wearer(self.bowler, self.top)
mock_request = MagicMock(name='mock request')
mock_request.user = self.user
self.viewset().destroy(mock_request, pk=hat_wearer.pk)
self.assertFalse(HatWearer.objects.filter(name="Jane").exists())
def test_removal_of_unknown_field(self):
"""
we should be transactional, if we blow up, nothing should be saved
"""
hat_wearer = self.create_hat_wearer(self.bowler)
mock_request = self.create_mock_request(
hats=[self.top.name, "fake hat"],
id=hat_wearer.id
)
response = self.viewset().update(mock_request, pk=hat_wearer.pk)
self.assertEqual(400, response.status_code)
hw = HatWearer.objects.get(name=u"Jane")
hat_names = hw.hats.all().values_list("name", flat=True)
self.assertEqual(list(hat_names), [self.bowler.name])
class UserProfileTestCase(TestCase):
def setUp(self):
self.user = User.objects.create(username='testuser')
models.UserProfile.objects.create(user=self.user)
self.mock_request = MagicMock(name='request')
self.mock_request.user = self.user
def test_user_profile(self):
with patch.object(self.user, 'is_authenticated', return_value=True):
response = api.UserProfileViewSet().list(self.mock_request)
expected = {
'readonly' : False,
'can_extract': False,
'filters' : [],
'roles' : {'default': []}
}
self.assertEqual(expected, response.data)
def test_user_profile_readonly(self):
with patch.object(self.user, 'is_authenticated', return_value=True):
profile = self.user.profile
profile.readonly = True
profile.save()
response = api.UserProfileViewSet().list(self.mock_request)
self.assertEqual(True, response.data['readonly'])
class TaggingTestCase(TestCase):
def setUp(self):
self.patient = models.Patient.objects.create()
self.episode = models.Episode.objects.create(patient=self.patient)
self.user = User.objects.create(username='testuser')
self.mock_request = MagicMock(name='request')
self.mock_request.user = self.user
def test_retrieve_tags(self):
self.episode.set_tag_names(['micro'], self.user)
response = api.TaggingViewSet().retrieve(self.mock_request, pk=self.episode.pk)
self.assertEqual(200, response.status_code)
self.assertEqual(True, response.data['micro'])
def test_tag_episode(self):
self.assertEqual(list(self.episode.get_tag_names(self.user)), [])
self.mock_request.data = {'micro': True}
response = api.TaggingViewSet().update(self.mock_request, pk=self.episode.pk)
self.assertEqual(202, response.status_code)
self.assertEqual(list(self.episode.get_tag_names(self.user)), ['micro'])
tag = models.Tagging.objects.get()
self.assertEqual(tag.created.date(), timezone.now().date())
self.assertEqual(tag.created_by, self.user)
self.assertIsNone(tag.updated_by)
self.assertIsNone(tag.updated)
def test_tag_episoe_with_id(self):
self.assertEqual(list(self.episode.get_tag_names(self.user)), [])
self.mock_request.data = {'micro': True, 'id': self.episode.id}
response = api.TaggingViewSet().update(self.mock_request, pk=self.episode.pk)
self.assertEqual(202, response.status_code)
self.assertEqual(list(self.episode.get_tag_names(self.user)), ['micro'])
tag = models.Tagging.objects.get()
self.assertEqual(tag.created.date(), timezone.now().date())
self.assertEqual(tag.created_by, self.user)
self.assertIsNone(tag.updated_by)
self.assertIsNone(tag.updated)
def test_untag_episode(self):
self.assertEqual(list(self.episode.get_tag_names(self.user)), [])
self.episode.set_tag_names(['micro'], self.user)
self.mock_request.data = {'micro': False}
response = api.TaggingViewSet().update(self.mock_request, pk=self.episode.pk)
self.assertEqual(202, response.status_code)
self.assertEqual(list(self.episode.get_tag_names(self.user)), [])
def test_tag_nonexistent_episode(self):
response = api.TaggingViewSet().update(self.mock_request, pk=56576)
self.assertEqual(404, response.status_code)
class EpisodeTestCase(OpalTestCase):
def setUp(self):
super(EpisodeTestCase, self).setUp()
self.patient, self.episode = self.new_patient_and_episode_please()
self.demographics = self.patient.demographics_set.get()
# add a date to make sure serialisation works as expected
self.demographics.date_of_birth = date(2010, 1, 1)
self.demographics.created = datetime.now()
self.episode.date_of_admission = date(2014, 1, 14)
self.episode.active = True
self.episode.save()
self.user = User.objects.create(username='testuser')
self.mock_request = MagicMock(name='request')
self.mock_request.user = self.user
self.mock_request.query_params = {}
self.expected = self.episode.to_dict(self.user)
self.expected["date_of_admission"] = "14/01/2014"
self.expected["start"] = "14/01/2014"
self.expected["episode_history"][0]["start"] = "14/01/2014"
self.expected["episode_history"][0]["date_of_admission"] = "14/01/2014"
def test_retrieve_episode(self):
response = json.loads(api.EpisodeViewSet().retrieve(self.mock_request, pk=self.episode.pk).content.decode('UTF-8'))
self.assertEqual(self.expected, response)
def test_retrieve_nonexistent_episode(self):
response = api.EpisodeViewSet().retrieve(self.mock_request, pk=678687)
self.assertEqual(404, response.status_code)
def test_list(self):
response = api.EpisodeViewSet().list(self.mock_request)
self.assertEqual(200, response.status_code)
response_content = json.loads(response.content.decode('UTF-8'))
self.assertEqual([self.expected], response_content)
def test_list_unauthenticated(self):
pass #TODO TEST THIS
def test_create_existing_patient(self):
self.demographics.name = 'Aretha Franklin'
self.demographics.hospital_number = '123123123'
self.demographics.save()
self.mock_request.data = {
"tagging" : { "micro":True },
"date_of_admission": "14/01/2015",
"demographics" : {
"hospital_number": self.demographics.hospital_number
}
}
response = api.EpisodeViewSet().create(self.mock_request)
self.assertEqual(201, response.status_code)
self.assertEqual(2, self.patient.episode_set.count())
self.assertEqual("14/01/2015", json.loads(response.content.decode('UTF-8'))['date_of_admission'])
def test_create_new_patient(self):
pcount = models.Patient.objects.filter(
demographics__hospital_number="999000999").count()
self.assertEqual(0, pcount)
self.mock_request.data = {
"tagging" : { "micro":True },
"date_of_admission" : "14/01/2015",
"demographics" : {
"hospital_number": "999000999"
}
}
response = api.EpisodeViewSet().create(self.mock_request)
episode = models.Episode.objects.get(
patient__demographics__hospital_number="999000999"
)
self.assertEqual(
episode.created_by,
self.mock_request.user
)
self.assertEqual(
episode.created.date(),
timezone.now().date()
)
self.assertIsNone(episode.updated)
self.assertIsNone(episode.updated_by)
self.assertEqual(201, response.status_code)
pcount = models.Patient.objects.filter(
demographics__hospital_number="999000999").count()
self.assertEqual(1, pcount)
def test_create_without_hospital_number(self):
self.mock_request.data = {
"tagging" : { "micro":True },
"date_of_admission" : "14/01/2015",
"demographics" : {
"first_name": "James"
}
}
response = api.EpisodeViewSet().create(self.mock_request)
self.assertEqual(1, Demographics.objects.filter(first_name='James').count())
def test_create_sets_demographics(self):
pcount = models.Patient.objects.filter(
demographics__hospital_number="9999000999").count()
self.assertEqual(0, pcount)
self.mock_request.data = {
"tagging" : { "micro":True },
"date_of_admission" : "14/01/2015",
"demographics" : {
"first_name": "Alain",
"surname": "Anderson",
"sex": "Male",
"hospital_number": "9999000999",
}
}
response = api.EpisodeViewSet().create(self.mock_request)
patient = models.Patient.objects.get(
demographics__hospital_number="9999000999"
)
demographics = patient.demographics_set.get()
self.assertEqual("Alain", demographics.first_name)
self.assertEqual("Anderson", demographics.surname)
self.assertEqual("Male", demographics.sex)
def test_create_sets_location(self):
pcount = models.Patient.objects.filter(
demographics__hospital_number="9999000999").count()
self.assertEqual(0, pcount)
self.mock_request.data = {
"tagging" : { "micro":True },
"date_of_admission" : "14/01/2015",
"demographics" : {
"hospital_number": "9999000999",
},
"location": {
"ward": "West",
"bed" : "7"
}
}
response = api.EpisodeViewSet().create(self.mock_request)
patient = models.Patient.objects.get(
demographics__hospital_number="9999000999")
location = patient.episode_set.get().location_set.get()
self.assertEqual("West", location.ward)
self.assertEqual("7", location.bed)
def test_create_sets_tagging(self):
pcount = models.Patient.objects.filter(
demographics__hospital_number="9999000999").count()
self.assertEqual(0, pcount)
self.mock_request.data = {
"tagging" : { "micro":True },
"date_of_admission" : "14/01/2015",
"demographics" : {
"hospital_number": "9999000999",
},
"location": {
"ward": "West",
"bed" : "7"
}
}
response = api.EpisodeViewSet().create(self.mock_request)
patient = models.Patient.objects.get(
demographics__hospital_number="9999000999")
episode = patient.episode_set.get()
tags = episode.get_tag_names(self.user)
self.assertEqual(u'micro', tags[0])
self.assertEqual(1, len(tags))
def test_update(self):
patient, episode = self.new_patient_and_episode_please()
self.assertEqual(None, episode.date_of_admission)
self.mock_request.data = {"date_of_admission": "14/01/2015"}
response = api.EpisodeViewSet().update(self.mock_request, pk=episode.pk)
e = models.Episode.objects.get(pk=episode.pk)
self.assertEqual(date(2015, 1, 14), e.date_of_admission)
response_dict = json.loads(response.content.decode('UTF-8'))
self.assertEqual(response_dict["date_of_admission"], "14/01/2015")
def test_update_nonexistent(self):
self.mock_request.data = {"date_of_admission": "14/01/2015"}
response = api.EpisodeViewSet().update(self.mock_request, pk=8993939)
self.assertEqual(404, response.status_code)
def test_update_consistency_error(self):
patient, episode = self.new_patient_and_episode_please()
episode.consistency_token = 'FFFF'
episode.save()
self.mock_request.data = {
"date_of_admission": "14/01/2015",
"consistency_token": "EEEE"
}
response = api.EpisodeViewSet().update(self.mock_request, pk=episode.pk)
self.assertEqual(409, response.status_code)
class PatientTestCase(OpalTestCase):
def setUp(self):
self.patient = models.Patient.objects.create()
self.mock_request = MagicMock(name='request')
self.mock_request.user = self.user
def test_retrieve_patient(self):
response = api.PatientViewSet().retrieve(self.mock_request, pk=self.patient.pk).content
expected = json_response(self.patient.to_dict(None)).content
self.assertEqual(expected, response)
def test_stores_access_log(self):
self.assertEqual(0, models.PatientRecordAccess.objects.count())
response = api.PatientViewSet().retrieve(self.mock_request, pk=self.patient.pk).content
self.assertEqual(1, models.PatientRecordAccess.objects.count())
class PatientRecordAccessViewSetTestCase(OpalTestCase):
def test_retrieve(self):
patient = models.Patient.objects.create()
mock_request = MagicMock(name='request')
mock_request.user = self.user
models.PatientRecordAccess.objects.create(patient=patient, user=self.user)
response = api.PatientRecordAccessViewSet().retrieve(mock_request, pk=patient.pk).content
loaded = json.loads(response.decode('UTF-8'))
self.assertEqual(patient.id, loaded[0]['patient'])
self.assertEqual(self.user.username, loaded[0]['username'])
class PatientListTestCase(TestCase):
def setUp(self):
self.mock_request = MagicMock(name='request')
@patch('opal.core.api.PatientList')
def test_retrieve_episodes(self, patient_list):
instantiated_list = patient_list.get.return_value.return_value
instantiated_list.to_dict.return_value = {}
expected = json_response({}).content
response = api.PatientListViewSet().retrieve(self.mock_request, pk='mylist').content
self.assertEqual(expected, response)
def test_retrieve_episodes_not_found(self):
response = api.PatientListViewSet().retrieve(self.mock_request, pk='not a real list at all')
self.assertEqual(404, response.status_code)
class RegisterPluginsTestCase(OpalTestCase):
@patch('opal.core.api.plugins.OpalPlugin.list')
def test_register(self, plugins):
mock_plugin = MagicMock(name='Mock Plugin')
mock_plugin.get_apis.return_value = [('thingapi', None)]
plugins.return_value = [mock_plugin]
with patch.object(api.router, 'register') as register:
api.register_plugin_apis()
register.assert_called_with('thingapi', None)