[REVIEW]: pyrolite: Python for geochemistry

[whedon]

Submitting author: @morganjwilliams (Morgan Williams)
Repository: https://github.com/morganjwilliams/pyrolite
Version: 0.2.7
Editor: @arfon
Reviewer: @arfon
Archive: 10.5281/zenodo.3877690

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Review checklist for @arfon

Conflict of interest

• I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

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General checks

• Repository: Is the source code for this software available at the repository url?
• License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
• Contribution and authorship: Has the submitting author (@morganjwilliams) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?

Functionality

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• Functionality: Have the functional claims of the software been confirmed?
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Documentation

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• Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
• Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
• Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
• Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

• Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
• A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
• State of the field: Do the authors describe how this software compares to other commonly-used packages?
• Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
• References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks. @arfon it looks like you're currently assigned to review this paper 🎉.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

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@whedon generate pdf

[arfon]

Accepting as part of pyOpenSci (pyOpenSci/software-submission#20)

[whedon]

👉 Check article proof 📄 👈

[arfon]

@morganjwilliams - Please make an archive of the software in Zenodo/figshare/other service and update this thread with the DOI of the archive. (I believe you may already have done this?)

[morganjwilliams]

Yes, the Zenodo DOI is already active. For this version see 10.5281/zenodo.3877690.

[arfon]

@whedon set 10.5281/zenodo.3877690 as archive

[whedon]

OK. 10.5281/zenodo.3877690 is the archive.

[arfon]

@whedon accept

[whedon]

Attempting dry run of processing paper acceptance...

[whedon]

👋 @openjournals/joss-eics, this paper is ready to be accepted and published.

Check final proof 👉 openjournals/joss-papers#1479

If the paper PDF and Crossref deposit XML look good in openjournals/joss-papers#1479, then you can now move forward with accepting the submission by compiling again with the flag deposit=true e.g.

@whedon accept deposit=true

[arfon]

@whedon accept deposit=true

[whedon]

Doing it live! Attempting automated processing of paper acceptance...

[whedon]

🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦

[whedon]

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

0. Check final PDF and Crossref metadata that was deposited 👉 Creating pull request for 10.21105.joss.02314 joss-papers#1480
1. Wait a couple of minutes to verify that the paper DOI resolves https://doi.org/10.21105/joss.02314
2. If everything looks good, then close this review issue.
3. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? notify your editorial technical team...

[arfon]

@morganjwilliams - your paper is now accepted into JOSS ⚡🚀💥

/ cc @lwasser

[whedon]

🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

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[morganjwilliams]

@arfon thanks for the speedy processing! 😄
I'll hotfix the badge shortly.