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Tests fail without printing details #2186

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yurivict opened this issue Aug 20, 2022 · 3 comments
Open

Tests fail without printing details #2186

yurivict opened this issue Aug 20, 2022 · 3 comments

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@yurivict
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===>  Testing for py39-OpenMC-0.13.1
===>   py39-OpenMC-0.13.1 depends on package: py39-pytest>=7,1 - found
===>   py39-OpenMC-0.13.1 depends on file: /usr/local/bin/python3.9 - found
cd /disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/openmc-0.13.1 && /usr/bin/env XDG_DATA_HOME=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39  XDG_CONFIG_HOME=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39  XDG_CACHE_HOME=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/.cache  HOME=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39 PATH=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/.bin:/home/yuri/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe -fno-omit-frame-pointer  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-fno-omit-frame-pointer"  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-omit-frame-pointer -fstack-protector-strong -fno-strict-aliasing -fno-omit-frame-pointer  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444" PYTHONPATH=/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/stage/usr/local/lib/python3.9/site-packages /usr/local/bin/python3.9 -m pytest -k '' -rs -v -o addopts= 
==================================================================================== test session starts =====================================================================================
platform freebsd13 -- Python 3.9.13, pytest-7.1.2, pluggy-1.0.0 -- /usr/local/bin/python3.9
cachedir: .pytest_cache
hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/openmc-0.13.1/.hypothesis/examples')
rootdir: /disk-samsung/freebsd-ports/science/py-OpenMC/work-py39/openmc-0.13.1, configfile: pytest.ini
plugins: requests-mock-1.9.3, forked-1.4.0, hypothesis-6.53.0, xdist-2.5.0
collected 678 items / 3 skipped                                                                                                                                                              

tests/regression_tests/adj_cell_rotation/test.py::test_rotation FAILED                                                                                                                 [  0%]
tests/regression_tests/asymmetric_lattice/test.py::test_asymmetric_lattice FAILED                                                                                                      [  0%]
tests/regression_tests/cmfd_feed/test.py::test_cmfd_physical_adjoint *** Error code 255

Stop.
make: stopped in /disk-samsung/freebsd-ports/science/py-OpenMC

Version: 0.13.1
Python: 3.9
FreeBSD 13.1
@pshriwise
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Hi @yurivict. The lack of error output does indeed make problems difficult to diagnose -- including why the error isn't being printed to screen! Even the 255 error code is listed as "undefined".

One option may be to add the -s flag to the pytest command. This will print all output from the OpenMC run to the screen. Seeing how far the simulation gets before failure may help us out quite a bit.

@yurivict yurivict mentioned this issue Mar 31, 2023
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@yurivict
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With -s the printout is:

===>   py39-OpenMC-0.13.3 depends on file: /usr/local/bin/python3.9 - found
cd /usr/ports/science/py-OpenMC/work-py39/openmc-0.13.3 && /usr/bin/env XDG_DATA_HOME=/usr/ports/science/py-OpenMC/work-py39  XDG_CONFIG_HOME=/usr/ports/science/py-OpenMC/work-py39  XDG_CACHE_HOME=/usr/ports/science/py-OpenMC/work-py39/.cache  HOME=/usr/ports/science/py-OpenMC/work-py39 PATH=/usr/local/libexec/ccache:/usr/ports/science/py-OpenMC/work-py39/.bin:/home/yuri/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/usr/ports/science/py-OpenMC/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" CCACHE_DIR="/tmp/.ccache" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444" PYTHONPATH=/usr/ports/science/py-OpenMC/work-py39/stage/usr/local/lib/python3.9/site-packages /usr/local/bin/python3.9 -m pytest -k '' -rs -v -o addopts= -s
========================================================================================== test session starts ==========================================================================================
platform freebsd13 -- Python 3.9.16, pytest-7.2.1, pluggy-1.0.0 -- /usr/local/bin/python3.9
cachedir: .pytest_cache
Using --randomly-seed=1176718354
rootdir: /usr/ports/science/py-OpenMC/work-py39/openmc-0.13.3, configfile: pytest.ini
plugins: forked-1.4.0, cov-2.9.0, randomly-3.12.0, timeout-2.1.0, rerunfailures-10.1, flaky-3.7.0, xdist-2.5.0, env-0.6.2, mock-3.10.0, freezegun-0.4.2, typeguard-3.0.2
collected 782 items / 3 skipped                                                                                                                                                                         

tests/regression_tests/photon_production/test.py::test_photon_production                                 %%%%%%%%%%%%%%%
                           %%%%%%%%%%%%%%%%%%%%%%%%
                        %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                      %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                                    %%%%%%%%%%%%%%%%%%%%%%%%
                                     %%%%%%%%%%%%%%%%%%%%%%%%
                 ###############      %%%%%%%%%%%%%%%%%%%%%%%%
                ##################     %%%%%%%%%%%%%%%%%%%%%%%
                ###################     %%%%%%%%%%%%%%%%%%%%%%%
                ####################     %%%%%%%%%%%%%%%%%%%%%%
                #####################     %%%%%%%%%%%%%%%%%%%%%
                ######################     %%%%%%%%%%%%%%%%%%%%
                #######################     %%%%%%%%%%%%%%%%%%
                 #######################     %%%%%%%%%%%%%%%%%
                 ######################     %%%%%%%%%%%%%%%%%
                  ####################     %%%%%%%%%%%%%%%%%
                    #################     %%%%%%%%%%%%%%%%%
                     ###############     %%%%%%%%%%%%%%%%
                       ############     %%%%%%%%%%%%%%%
                          ########     %%%%%%%%%%%%%%
                                      %%%%%%%%%%%

                 | The OpenMC Monte Carlo Code
       Copyright | 2011-2023 MIT, UChicago Argonne LLC, and contributors
         License | https://docs.openmc.org/en/latest/license.html
         Version | 0.13.3
       Date/Time | 2023-03-30 23:36:36
  OpenMP Threads | 8

 Reading model XML file './model.xml' ...
 ERROR: No cross_sections.xml file was specified in materials.xml or in the
        OPENMC_CROSS_SECTIONS environment variable. OpenMC needs such a file to
        identify where to find data libraries. Please consult the user's guide
        at https://docs.openmc.org/ for information on how to set up data
        libraries.
FAILED
tests/regression_tests/dagmc/external/test.py::test_external_dagmc SKIPPED (DAGMC is not enabled.)
tests/unit_tests/test_element_wo.py::test_element_wo FAILED
tests/regression_tests/entropy/test.py::test_entropy                                 %%%%%%%%%%%%%%%
                           %%%%%%%%%%%%%%%%%%%%%%%%
                        %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                      %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                                    %%%%%%%%%%%%%%%%%%%%%%%%
                                     %%%%%%%%%%%%%%%%%%%%%%%%
                 ###############      %%%%%%%%%%%%%%%%%%%%%%%%
                ##################     %%%%%%%%%%%%%%%%%%%%%%%
                ###################     %%%%%%%%%%%%%%%%%%%%%%%
                ####################     %%%%%%%%%%%%%%%%%%%%%%
                #####################     %%%%%%%%%%%%%%%%%%%%%
                ######################     %%%%%%%%%%%%%%%%%%%%
                #######################     %%%%%%%%%%%%%%%%%%
                 #######################     %%%%%%%%%%%%%%%%%
                 ######################     %%%%%%%%%%%%%%%%%
                  ####################     %%%%%%%%%%%%%%%%%
                    #################     %%%%%%%%%%%%%%%%%
                     ###############     %%%%%%%%%%%%%%%%
                       ############     %%%%%%%%%%%%%%%
                          ########     %%%%%%%%%%%%%%
                                      %%%%%%%%%%%

                 | The OpenMC Monte Carlo Code
       Copyright | 2011-2023 MIT, UChicago Argonne LLC, and contributors
         License | https://docs.openmc.org/en/latest/license.html
         Version | 0.13.3
       Date/Time | 2023-03-30 23:36:37
  OpenMP Threads | 8

 Reading settings XML file...
 ERROR: No cross_sections.xml file was specified in materials.xml or in the
        OPENMC_CROSS_SECTIONS environment variable. OpenMC needs such a file to
        identify where to find data libraries. Please consult the user's guide
        at https://docs.openmc.org/ for information on how to set up data
        libraries.
FAILED
tests/unit_tests/test_endf.py::test_float_endf FAILED
tests/unit_tests/test_endf.py::test_int_endf PASSED
tests/unit_tests/test_deplete_microxs.py::test_from_array PASSED
tests/unit_tests/test_deplete_microxs.py::test_csv PASSED
tests/unit_tests/test_data_decay.py::test_nb90_spectra ERROR
tests/unit_tests/test_data_decay.py::test_decay_photon_energy PASSED
tests/unit_tests/test_data_decay.py::test_nb90_halflife ERROR
tests/unit_tests/test_data_decay.py::test_sources ERROR
tests/unit_tests/test_data_decay.py::test_fpy ERROR
tests/unit_tests/test_data_decay.py::test_nb90_nuclide ERROR
tests/unit_tests/test_data_decay.py::test_get_decay_modes PASSED
tests/unit_tests/test_data_decay.py::test_nb90_modes ERROR
tests/regression_tests/void/test.py::test_void                                 %%%%%%%%%%%%%%%
                           %%%%%%%%%%%%%%%%%%%%%%%%
                        %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                      %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                                    %%%%%%%%%%%%%%%%%%%%%%%%
                                     %%%%%%%%%%%%%%%%%%%%%%%%
                 ###############      %%%%%%%%%%%%%%%%%%%%%%%%
                ##################     %%%%%%%%%%%%%%%%%%%%%%%
                ###################     %%%%%%%%%%%%%%%%%%%%%%%
                ####################     %%%%%%%%%%%%%%%%%%%%%%
                #####################     %%%%%%%%%%%%%%%%%%%%%
                ######################     %%%%%%%%%%%%%%%%%%%%
                #######################     %%%%%%%%%%%%%%%%%%
                 #######################     %%%%%%%%%%%%%%%%%
                 ######################     %%%%%%%%%%%%%%%%%
                  ####################     %%%%%%%%%%%%%%%%%
                    #################     %%%%%%%%%%%%%%%%%
                     ###############     %%%%%%%%%%%%%%%%
                       ############     %%%%%%%%%%%%%%%
                          ########     %%%%%%%%%%%%%%
                                      %%%%%%%%%%%

                 | The OpenMC Monte Carlo Code
       Copyright | 2011-2023 MIT, UChicago Argonne LLC, and contributors
         License | https://docs.openmc.org/en/latest/license.html
         Version | 0.13.3
       Date/Time | 2023-03-30 23:36:38
  OpenMP Threads | 8

 Reading model XML file './model.xml' ...
 ERROR: No cross_sections.xml file was specified in materials.xml or in the
        OPENMC_CROSS_SECTIONS environment variable. OpenMC needs such a file to
        identify where to find data libraries. Please consult the user's guide
        at https://docs.openmc.org/ for information on how to set up data
        libraries.
FAILED
tests/regression_tests/energy_cutoff/test.py::test_energy_cutoff                                 %%%%%%%%%%%%%%%
                           %%%%%%%%%%%%%%%%%%%%%%%%
                        %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                      %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                                    %%%%%%%%%%%%%%%%%%%%%%%%
                                     %%%%%%%%%%%%%%%%%%%%%%%%
                 ###############      %%%%%%%%%%%%%%%%%%%%%%%%
                ##################     %%%%%%%%%%%%%%%%%%%%%%%
                ###################     %%%%%%%%%%%%%%%%%%%%%%%
                ####################     %%%%%%%%%%%%%%%%%%%%%%
                #####################     %%%%%%%%%%%%%%%%%%%%%
                ######################     %%%%%%%%%%%%%%%%%%%%
                #######################     %%%%%%%%%%%%%%%%%%
                 #######################     %%%%%%%%%%%%%%%%%
                 ######################     %%%%%%%%%%%%%%%%%
                  ####################     %%%%%%%%%%%%%%%%%
                    #################     %%%%%%%%%%%%%%%%%
                     ###############     %%%%%%%%%%%%%%%%
                       ############     %%%%%%%%%%%%%%%
                          ########     %%%%%%%%%%%%%%
                                      %%%%%%%%%%%

                 | The OpenMC Monte Carlo Code
       Copyright | 2011-2023 MIT, UChicago Argonne LLC, and contributors
         License | https://docs.openmc.org/en/latest/license.html
         Version | 0.13.3
       Date/Time | 2023-03-30 23:36:38
  OpenMP Threads | 8

 Reading model XML file './model.xml' ...
 ERROR: No cross_sections.xml file was specified in materials.xml or in the
        OPENMC_CROSS_SECTIONS environment variable. OpenMC needs such a file to
        identify where to find data libraries. Please consult the user's guide
        at https://docs.openmc.org/ for information on how to set up data
        libraries.
FAILED
tests/unit_tests/test_source.py::test_source PASSED
tests/unit_tests/test_source.py::test_source_dlopen PASSED
tests/unit_tests/test_source.py::test_source_xml_roundtrip PASSED
tests/unit_tests/test_source.py::test_source_file PASSED
tests/unit_tests/test_source.py::test_spherical_uniform PASSED
tests/unit_tests/test_source.py::test_rejection                                 %%%%%%%%%%%%%%%
                           %%%%%%%%%%%%%%%%%%%%%%%%
                        %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                      %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                                    %%%%%%%%%%%%%%%%%%%%%%%%
                                     %%%%%%%%%%%%%%%%%%%%%%%%
                 ###############      %%%%%%%%%%%%%%%%%%%%%%%%
                ##################     %%%%%%%%%%%%%%%%%%%%%%%
                ###################     %%%%%%%%%%%%%%%%%%%%%%%
                ####################     %%%%%%%%%%%%%%%%%%%%%%
                #####################     %%%%%%%%%%%%%%%%%%%%%
                ######################     %%%%%%%%%%%%%%%%%%%%
                #######################     %%%%%%%%%%%%%%%%%%
                 #######################     %%%%%%%%%%%%%%%%%
                 ######################     %%%%%%%%%%%%%%%%%
                  ####################     %%%%%%%%%%%%%%%%%
                    #################     %%%%%%%%%%%%%%%%%
                     ###############     %%%%%%%%%%%%%%%%
                       ############     %%%%%%%%%%%%%%%
                          ########     %%%%%%%%%%%%%%
                                      %%%%%%%%%%%

                 | The OpenMC Monte Carlo Code
       Copyright | 2011-2023 MIT, UChicago Argonne LLC, and contributors
         License | https://docs.openmc.org/en/latest/license.html
         Version | 0.13.3
       Date/Time | 2023-03-30 23:36:38
  OpenMP Threads | 8

 Reading settings XML file...
 ERROR: No cross_sections.xml file was specified in materials.xml or in the
        OPENMC_CROSS_SECTIONS environment variable. OpenMC needs such a file to
        identify where to find data libraries. Please consult the user's guide
        at https://docs.openmc.org/ for information on how to set up data
        libraries.
*** Error code 255

@yurivict
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0.15.0 still has the same problem.

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@yurivict @pshriwise