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db.go
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db.go
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// Copyright (c) 2016 OpenM++
// This code is licensed under the MIT license (see LICENSE.txt for details)
/*
Package db to support openM++ model database operations.
Database may contain multiple openM++ models and consists of two parts:
(a) metadata to describe models: data types, input parameters, output tables, etc.
(b) actual modeling data itself: database tables for input parameters and output tables.
To run the model we need to have a set of model input parameters, called "input working set" or "workset".
User can "open" workset in read-write mode and modify model input parameters.
To use that set as model run input user must "close" it by marking workset as read-only.
After model run user can again open workset as read-write and continue input editing.
Each workset has a name (unique inside of the model) and set id (database unique positive int).
Result of model run stored in output tables and also include copy of all input parameters used to run the model.
That pair of input and output data called "run" and identified by run id (database unique positive int).
*/
package db
import (
"container/list"
"database/sql"
"errors"
"os"
"strconv"
"strings"
"github.com/openmpp/go/ompp/helper"
"github.com/openmpp/go/ompp/omppLog"
)
// Database connection values
const (
SQLiteDbDriver = "SQLite" // default db driver name
SQLiteTimeout = 86400 // default SQLite busy timeout
Sqlite3DbDriver = "sqlite3" // SQLite db driver name
OdbcDbDriver = "odbc" // ODBC db driver name
)
// MinSchemaVersion is a minimal compatible db schema version
const MinSchemaVersion = 104
// MaxSchemaVersion is a maximum compatible db schema version
const MaxSchemaVersion = 104
// Open database connection.
//
// Default driver name: "SQLite" and connection string is compatible with model connection, ie:
//
// Database=modelName.sqlite; Timeout=86400; OpenMode=ReadWrite;
//
// Otherwise it is expected to be driver-specific connection string, ie:
//
// DSN=ms2014; UID=sa; PWD=secret;
// file:m1.sqlite?mode=rw&_busy_timeout=86400000
//
// If isFacetRequired is true then database facet determined
func Open(dbConnStr, dbDriver string, isFacetRequired bool) (*sql.DB, Facet, error) {
// convert default SQLite connection string into sqlite3 format
// delete existing sqlite file if required
facet := DefaultFacet
if dbDriver == "" || dbDriver == SQLiteDbDriver {
var err error
if dbConnStr, dbDriver, err = prepareSqlite(dbConnStr); err != nil {
return nil, DefaultFacet, err
}
}
if dbDriver == Sqlite3DbDriver { // at this point SQLite pseudo name replaced by "sqlite3" db-driver name
facet = SqliteFacet
}
// check if ODBC compiled in, use go install -tags odbc to do this
if !IsOdbcSupported && dbDriver == OdbcDbDriver {
return nil, DefaultFacet, errors.New("ODBC database connection not supported (executable build without ODBC library)")
}
// empty connection string likely produce error message "invalid openM++ database", explain it to the user source of the problem
if dbConnStr == "" {
omppLog.Log("database connection string is empty, it may be an inavlid parameters")
}
// open database connection
omppLog.LogSql("Connect to " + dbDriver)
dbConn, err := sql.Open(dbDriver, dbConnStr)
if err != nil {
return nil, DefaultFacet, err
}
// determine db facet if requered and not defined by driver (example: odbc)
if isFacetRequired && facet == DefaultFacet {
facet = detectFacet(dbConn)
}
if isFacetRequired {
omppLog.LogSql(facet.String())
}
return dbConn, facet, nil
}
// IfEmptyMakeDefault return SQLite connection string and driver name based on model name:
//
// Database=modelName.sqlite; Timeout=86400; OpenMode=ReadWrite;
func IfEmptyMakeDefault(modelName, modelSqlitePath, dbConnStr, dbDriver string) (string, string) {
if dbDriver == "" {
dbDriver = SQLiteDbDriver
}
if dbDriver == SQLiteDbDriver && dbConnStr == "" {
p := modelSqlitePath
if p == "" && modelName != "" {
p = modelName + ".sqlite"
}
dbConnStr = MakeSqliteDefault(p)
}
return dbConnStr, dbDriver
}
// IfEmptyMakeDefaultReadOnly return read-only SQLite connection string and driver name based on model name:
//
// Database=modelName.sqlite; Timeout=86400; OpenMode=ReadWrite;
func IfEmptyMakeDefaultReadOnly(modelName, modelSqlitePath, dbConnStr, dbDriver string) (string, string) {
if dbDriver == "" {
dbDriver = SQLiteDbDriver
}
if dbDriver == SQLiteDbDriver && dbConnStr == "" {
p := modelSqlitePath
if p == "" && modelName != "" {
p = modelName + ".sqlite"
}
dbConnStr = MakeSqliteDefaultReadOnly(p)
}
return dbConnStr, dbDriver
}
// MakeSqliteDefault return default SQLite connection string based on model.sqlite file path:
//
// Database=model.sqlite; Timeout=86400; OpenMode=ReadWrite;
func MakeSqliteDefault(modelSqlitePath string) string {
return "Database=" + modelSqlitePath + "; Timeout=" + strconv.Itoa(SQLiteTimeout) + "; OpenMode=ReadWrite;"
}
// MakeSqliteDefaultReadOnly return default read-only SQLite connection string based on model.sqlite file path:
//
// Database=model.sqlite; Timeout=86400; OpenMode=ReadOnly;
func MakeSqliteDefaultReadOnly(modelSqlitePath string) string {
return "Database=" + modelSqlitePath + "; Timeout=" + strconv.Itoa(SQLiteTimeout) + "; OpenMode=ReadOnly;"
}
// Convert SQLite connection string into "sqlite3" format and delete existing db.slite file if required.
//
// Following parameters allowed for SQLite database connection:
//
// Database - (required) database file path or URI
// Timeout - (optional) table lock "busy" timeout in seconds, default=0
// OpenMode - (optional) database file open mode: ReadOnly, ReadWrite, Create, default=ReadOnly
// DeleteExisting - (optional) if true then delete existing database file, default: false
func prepareSqlite(dbConnStr string) (string, string, error) {
// parse SQLite connection string
kv, err := helper.ParseKeyValue(dbConnStr)
if err != nil {
return "", "", err
}
// check SQLite connection string parts
dbPath := kv["Database"]
if dbPath == "" {
return "", "", errors.New("SQLIte database file path cannot be empty")
}
m := kv["OpenMode"]
switch strings.ToLower(m) {
case "", "readonly":
m = "ro"
case "readwrite":
m = "rw"
case "create":
m = "rwc"
default:
return "", "", errors.New("SQLIte invalid OpenMode=" + m)
}
// check if file exist:
// sqlite3 driver does create new file if not exist, it should return an error
if m == "ro" || m == "rw" {
if _, err := os.Stat(dbPath); err != nil {
return "", "", errors.New("SQLIte file not exist (or not accessible) " + dbPath)
}
}
s := kv["Timeout"]
var t int
if s != "" {
if t, err = strconv.Atoi(s); err != nil {
return "", "", err
}
}
// if required delete source file
s = kv["DeleteExisting"]
if s != "" {
var isDel bool
if isDel, err = strconv.ParseBool(s); err != nil {
return "", "", err
}
if isDel {
_ = os.Remove(dbPath) // ignore file delete errors, assume file not exist
}
}
// make sqlite3 connection string
s3Conn := "file:" + dbPath + "?mode=" + m
if t != 0 {
s3Conn += "&_busy_timeout=" + strconv.Itoa(1000*t)
}
return s3Conn, Sqlite3DbDriver, nil
}
// SelectFirst select first db row and pass it to cvt() for row.Scan()
func SelectFirst(dbConn *sql.DB, query string, cvt func(row *sql.Row) error) error {
if dbConn == nil {
return errors.New("invalid database connection")
}
omppLog.LogSql(query)
return cvt(dbConn.QueryRow(query))
}
// SelectRows select db rows and pass each to cvt() for rows.Scan()
func SelectRows(dbConn *sql.DB, query string, cvt func(rows *sql.Rows) error) error {
if dbConn == nil {
return errors.New("invalid database connection")
}
omppLog.LogSql(query)
rows, err := dbConn.Query(query) // query db rows
if err != nil {
return err
}
defer rows.Close()
// process each row
for rows.Next() {
if err = cvt(rows); err != nil {
return err
}
}
return rows.Err()
}
// SelectRowsTo select db rows and pass each row to cvt().
// cvt() return true to continue or false to stop rows processing.
func SelectRowsTo(dbConn *sql.DB, query string, cvt func(rows *sql.Rows) (bool, error)) error {
if dbConn == nil {
return errors.New("invalid database connection")
}
omppLog.LogSql(query)
rows, err := dbConn.Query(query) // query db rows
if err != nil {
return err
}
defer rows.Close()
// process each row until the end or until cvt() return false to continue
for rows.Next() {
isNext, err := cvt(rows)
if err != nil {
return err
}
if !isNext {
break
}
}
return rows.Err()
}
// SelectToList select db rows into list using cvt to convert (scan) each db row into struct.
//
// It selects "page size" number of rows starting from row number == offset (zero based).
// If page size <= 0 then all rows returned.
func SelectToList(
dbConn *sql.DB, query string, layout ReadPageLayout, cvt func(rows *sql.Rows) (interface{}, error)) (*list.List, *ReadPageLayout, error) {
if dbConn == nil {
return nil, nil, errors.New("invalid database connection")
}
// query db rows
omppLog.LogSql(query)
rows, err := dbConn.Query(query)
if err != nil {
return nil, nil, err
}
defer rows.Close()
// adjust page layout: starting offset and page size
nStart := layout.Offset
if nStart < 0 {
nStart = 0
}
nSize := layout.Size
if nSize < 0 {
nSize = 0
}
var nRow int64
lt := ReadPageLayout{
Offset: nStart,
Size: 0,
IsLastPage: false,
}
// convert each row and append to the result list
rs := list.New()
for rows.Next() {
nRow++
if nSize > 0 && nRow > nStart+nSize {
break
}
if nRow <= nStart {
continue
}
// convert and add row to the page
r, err := cvt(rows)
if err != nil {
return nil, nil, err
}
rs.PushBack(r)
lt.Size++
}
err = rows.Err()
if err != nil {
return nil, nil, err
}
// check for the empty result page or last page
if lt.Size <= 0 {
lt.Offset = nRow
}
lt.IsLastPage = nSize <= 0 || nSize > 0 && nRow <= nStart+nSize
return rs, <, nil
}
// Update execute sql query outside of transaction scope (on different connection)
func Update(dbConn *sql.DB, query string) error {
if dbConn == nil {
return errors.New("invalid database connection")
}
omppLog.LogSql(query)
_, err := dbConn.Exec(query)
return err
}
// TrxSelectRows select db rows in transaction scope and pass each to cvt() for rows.Scan()
func TrxSelectRows(dbTrx *sql.Tx, query string, cvt func(rows *sql.Rows) error) error {
if dbTrx == nil {
return errors.New("invalid database transaction")
}
omppLog.LogSql(query)
rows, err := dbTrx.Query(query) // query db rows
if err != nil {
return err
}
defer rows.Close()
// process each row
for rows.Next() {
if err = cvt(rows); err != nil {
return err
}
}
return rows.Err()
}
// TrxSelectFirst select first db row in transaction scope and pass it to cvt() for row.Scan()
func TrxSelectFirst(dbTrx *sql.Tx, query string, cvt func(row *sql.Row) error) error {
if dbTrx == nil {
return errors.New("invalid database transaction")
}
omppLog.LogSql(query)
return cvt(dbTrx.QueryRow(query))
}
// TrxUpdate execute sql query in transaction scope
func TrxUpdate(dbTrx *sql.Tx, query string) error {
if dbTrx == nil {
return errors.New("invalid database transaction")
}
omppLog.LogSql(query)
_, err := dbTrx.Exec(query)
return err
}
// TrxUpdateStatement execute sql statement in transaction scope until put() return true
func TrxUpdateStatement(dbTrx *sql.Tx, query string, put func() (bool, []interface{}, error)) error {
if dbTrx == nil {
return errors.New("invalid database transaction")
}
omppLog.LogSql(query)
// prepare statement in transaction scope
stmt, err := dbTrx.Prepare(query)
if err != nil {
return err
}
defer stmt.Close()
// until put() return next row values execute statement
for {
isNext, r, err := put()
if err != nil {
return err
}
if !isNext {
break
}
_, err = stmt.Exec(r...)
if err != nil {
return err
}
}
return nil
}
// OpenmppSchemaVersion return db schema: select id_value from id_lst where id_key = 'openmpp'
func OpenmppSchemaVersion(dbConn *sql.DB) (int, error) {
var nVer int
err := SelectFirst(dbConn,
"SELECT id_value FROM id_lst WHERE id_key = 'openmpp'",
func(row *sql.Row) error {
return row.Scan(&nVer)
})
switch {
case err == sql.ErrNoRows:
return 0, nil
case err != nil:
return -1, err
}
return nVer, nil
}
// CheckOpenmppSchemaVersion return error if it is not openM++ db or schema version incompatible
func CheckOpenmppSchemaVersion(dbConn *sql.DB) error {
nv, err := OpenmppSchemaVersion(dbConn)
switch {
case err != nil || err == nil && nv <= 0:
return errors.New("error: invalid database, likely not an openM++ database")
case nv < MinSchemaVersion:
return errors.New("error: incompatible, old version of database: " + strconv.Itoa(nv) + ", please use earlier version of openM++ tools")
case nv > MaxSchemaVersion:
return errors.New("error: incompatible, newer version of database: " + strconv.Itoa(nv) + ", please use more recent version of openM++ tools")
}
return nil
}
// convert boolean to sql value: true=1, false=0
func toBoolSqlConst(isValue bool) string {
if isValue {
return "1"
}
return "0"
}
// return true if character is can be interpreted as sql ' quote
// MSSQL silently replace following utf-16 chars with 'single' quote:
/*
ʹ 697 Modifier Letter Prime
ʼ 700 Modifier Letter Apostrophe
ˈ 712 Modifier Letter Vertical Line
′ 8242 Prime
' 65287 Fullwidth Apostrophe
*/
func IsUnsafeQuote(c rune) bool {
return c == 0x2b9 || c == 0x2bc || c == 0x2c8 || c == 0x2032 || c == 0xff07
}
// make sql quoted string, ie: 'O”Brien'.
func ToQuoted(src string) string {
var sb strings.Builder
sb.WriteRune('\'')
for _, c := range src {
if c == '\'' || IsUnsafeQuote(c) {
sb.WriteString("''")
} else {
sb.WriteRune(c)
}
}
sb.WriteRune('\'')
return sb.String()
}
// return "NULL" if string ” empty or return sql quoted string, ie: 'O”Brien'
func toQuotedOrNull(src string) string {
if src == "" {
return "NULL"
}
return ToQuoted(src)
}
// make sql quoted string, ie: 'O”Brien'.
// Trim spaces and return up to maxLen bytes from src string.
func toQuotedMax(src string, maxLen int) string {
return ToQuoted(leftMax(src, maxLen))
}
// return "NULL" if string ” empty or return sql quoted string, ie: 'O”Brien'
// Trim spaces and return up to maxLen bytes from src string.
func toQuotedOrNullMax(src string, maxLen int) string {
return toQuotedOrNull(leftMax(src, maxLen))
}
// Return up to maxLen bytes from src string.
// It is return bytes (not runes) and last utf-8 rune may be incorrect in result.
func leftMax(src string, maxLen int) string {
if maxLen <= 0 {
return ""
}
if len(src) > maxLen {
return src[:maxLen-1]
}
return src
}