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changelog.rst

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Changelog

  • 0.4.9 <20/11/20>
  • 149 improved reliability of twix file header reading (thanks to @darrencl for this)
  • 0.4.3 <29/09/20>
  • 145 fixed issue with calculating transform for sagittally planned twix voxels
  • 146 substantial overhaul of the singlet fitting module
  • 0.4.2 <20/08/20>
  • 143 changed .IMA loading to handle cases where data shape is calculated incorrectly
  • 11 added anonymisation of twix VD/VE files
  • 139 fixed an issue where axial/sagittal/coronal vectors could be calculated incorrectly
  • 0.4.1 <24/05/20>
  • 137 added functions to support absolute quantification
  • 135 added TR parameter to MRSBase objects
  • 133 improved interface to frequency correction methods and new method RATS
  • 0.4.0 <13/05/20>
  • 128 channel combination functions can now accept a channel axis
  • 125 loading DICOM image volumes uses supplied extension to identify candidate slices
  • 124 GE P-files are now supported
  • 121 fixed missing return of MRSData.fid method
  • 0.3.9 <10/07/18>
  • 115 added ability to change encoding used for Philips SPAR files
  • 0.3.8 <22/05/18>
  • 107 LCModel processing works without a voxel transform
  • 111 issues when processing with TARQUIN are reported to the user
  • 0.3.7 <30/04/18>
  • 109 TARQUIN processing now supports a water reference
  • 85 new whiten function to decorrelate multi-channel data
  • 87 singlet fitting returns MRSData for fit
  • 102 fixed problem with loading anonymized twix files
  • 100 improved loading of Philips sdat files (thanks to @jhamilx for help)
  • 98 fixed an issue where 2D images could not be used to create a voxel mask
  • 0.3.6 <02/11/17>
  • 94 loading Siemens DICOM now includes a voxel transform
  • 88 fixed an issue where certain Siemens DICOM files did not import
  • 92 fixed a problem where row_vector and column_vector where swapped
  • 90 fixed a problem with resampling to a single slice
  • 0.3.5 <25/09/17>
  • 82 fixed an issue with spectral registration over limited frequency ranges
  • 0.3.4 <05/08/17>
  • 80 Added resampling of 3D volumes to new coordinate systems
  • 0.3.3 <03/08/17>
  • 76 Added new auto-phasing algorithms
  • 0.3.2 <02/08/17>
  • 78 fixed an issue where SIFT denoising returns real values from complex input
  • 0.3.1 <01/08/17>
  • 74 changed image direction vectors to always be positive
  • 72 fixed a problem where sometimes channel combination was done over the wrong axis
  • 70 added direction vector accessors for spatial orientation
  • 68 added support for save/load of Nifti format
  • 67 created image mask is now an ImageBase object
  • 63 coordinate transform functions now accept nd grids as input, not just single coordinates
  • 62 can create a mask showing spectroscopy volume on structural volume
  • 59 TARQUIN processing now includes plots of fits and data
  • 56 added ability to get a slice to access a subset of spectrum
  • 54 removed some additional PHI when anonymising twix data. Thanks to @josephmje for the fix
  • 45 load_twix() now gets voxel positioning information
  • 44 added ImageBase class to handle working with structural images
  • 38 read TE from twix files
  • 0.3.0 <04/05/17>
  • 39 fixed issue with spline denoising receiving float instead of integer values
  • 35 adjust_frequency() function for MRSData
  • 33 negated initial guesses for spectral registration
  • 31 all phase adjustments use common function
  • 29 loading functions for Bruker data
  • 28 add documentation for water suppression methods
  • 24 added MRSSpectrum object to match existing FID object. Thanks to @lasyasreepada for the feature
  • 23 fixed denoising methods casting complex to real
  • 21 added adjust_phase() function for MRSData
  • 20 added support for MRS DICOM format
  • 17 fixed bug where lcmodel files where created without quoted strings
  • 15 single location for current version information _version.py
  • 10 convert all docstrings to NumPy format, thanks to @lasyasreepada for a great job