Welcome! This is the documentation for Suspect , last updated
Parts of the documentation:
notebooks/tut01_intro.ipynb notebooks/tut02_channels.ipynb notebooks/tut04_quant.ipynb notebooks/tut05_hsvd.ipynb notebooks/tut06_mpl.ipynb
notebooks/howto/coregister_images.ipynb
notebooks/howto/coregister_imagesLearn how to combine anatomical scans with your MRS voxels
As part of the 2020 NMR in Biomed Special Edition on Spectroscopy, Near et al. wrote a paper giving the consensus opinion on the post-acquisition processing steps, at least for the single voxel case:
Near, J., Harris, A. D., Juchem, C., Kreis, R., Marjańska, M., Öz, G., et al. (2020). Preprocessing, analysis and quantification in single‐voxel magnetic resonance spectroscopy: experts' consensus recommendations. NMR in Biomedicine, 29, 323–23. http://doi.org/10.1002/nbm.4257
This is a highly worthwhile read for any spectroscopist, with excellent detail on almost every component of the process, with the one notable exception of channel combination.
Of course it is possible to perform all the processing steps from within Suspect, here we provide a Jupyter notebook with the complete consensus pipeline implemented.
notebooks/consensus_playground.ipynb
notebooks/consensus_playground
suspect_api.rst imagebase_api.rst mrs_data_api.rst frequency_correction_api.rst fitting_api.rst
Please see the changelog </changelog>.