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process_eval.do
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process_eval.do
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/*======================================================================================
DO FILE NAME: process_eval.do
PROJECT: Germ Defence
AUTHOR: S Walter
DATE: Sept 2021
DESCRIPTION OF FILE: Analyse website usage data for intervention group
DATASETS USED: data in memory ($output/process_eval.dta)
OUTPUT CREATED: procees_eval.xlsx, process_eval_cat.xlsx
procees_eval2.xlsx, process_eval_cat2.xlsx
=======================================================================================*/
global gd "`c(pwd)'"
use "$gd/output/process_eval.dta", replace
*limit to intervention practices only
drop if intervention!=1
gen user_rate=n_users/list_size
xtile deprivation_decile = deprivation_pctile, nq(10)
*** 1. Main process analysis - all intervention practices
** A. Model outcomes with user rate as continuous covariate
* i. deprivation as continuous
glm rti_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("RTI") replace
putexcel A1=matrix(r(table)), names
glm arti_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("aRTI") modify
putexcel A1=matrix(r(table)), names
glm gastro_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("gastro") modify
putexcel A1=matrix(r(table)), names
glm coviddiag_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("coviddiag") modify
putexcel A1=matrix(r(table)), names
glm covidsympsens_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("covidsympsens") modify
putexcel A1=matrix(r(table)), names
glm covidsympspec_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("covidsympspec") modify
putexcel A1=matrix(r(table)), names
glm antibio_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("antibio") modify
putexcel A1=matrix(r(table)), names
glm adm_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("adm") modify
putexcel A1=matrix(r(table)), names
* ii. deprivation as categorical (deciles)
xi: glm rti_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("RTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm arti_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("aRTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm gastro_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("gastro2") modify
putexcel A1=matrix(r(table)), names
xi: glm coviddiag_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("coviddiag2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympsens_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("covidsympsens2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympspec_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("covidsympspec2") modify
putexcel A1=matrix(r(table)), names
xi: glm antibio_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("antibio2") modify
putexcel A1=matrix(r(table)), names
xi: glm adm_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval.xlsx", sheet("adm2") modify
putexcel A1=matrix(r(table)), names
** B. Model user rate as categorical
gen users_cat3=0
replace users_cat3=1 if user_rate>0.01 & user_rate<0.1
replace users_cat3=2 if user_rate>=0.1
* i. deprivation as continuous
glm rti_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("RTI") replace
putexcel A1=matrix(r(table)), names
glm arti_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("aRTI") modify
putexcel A1=matrix(r(table)), names
glm gastro_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("gastro") modify
putexcel A1=matrix(r(table)), names
glm coviddiag_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("coviddiag") modify
putexcel A1=matrix(r(table)), names
glm covidsympsens_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("covidsympsens") modify
putexcel A1=matrix(r(table)), names
glm covidsympspec_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("covidsympspec") modify
putexcel A1=matrix(r(table)), names
glm antibio_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("antibio") modify
putexcel A1=matrix(r(table)), names
glm adm_events users_cat3 deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("adm") modify
putexcel A1=matrix(r(table)), names
* ii. deprivation as categorical (deciles)
xi: glm rti_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("RTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm arti_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("aRTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm gastro_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("gastro2") modify
putexcel A1=matrix(r(table)), names
xi: glm coviddiag_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("coviddiag2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympsens_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("covidsympsens2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympspec_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("covidsympspec2") modify
putexcel A1=matrix(r(table)), names
xi: glm antbio_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("antibio2") modify
putexcel A1=matrix(r(table)), names
xi: glm adm_events users_cat3 i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat.xlsx", sheet("adm2") modify
putexcel A1=matrix(r(table)), names
** 3. Model only practices with >1% uptake
drop if user_rate<0.01
**A. User rate as continuous
* i. deprivation as continuous
glm rti_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("RTI") replace
putexcel A1=matrix(r(table)), names
glm arti_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("aRTI") modify
putexcel A1=matrix(r(table)), names
glm gastro_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("gastro") modify
putexcel A1=matrix(r(table)), names
glm coviddiag_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("coviddiag") modify
putexcel A1=matrix(r(table)), names
glm covidsympsens_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("covidsympsens") modify
putexcel A1=matrix(r(table)), names
glm covidsympspec_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("covidsympspec") modify
putexcel A1=matrix(r(table)), names
glm antibio_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("antibio") modify
putexcel A1=matrix(r(table)), names
glm adm_events user_rate deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("adm") modify
putexcel A1=matrix(r(table)), names
* ii. deprivation as categorical (deciles)
xi: glm rti_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("RTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm arti_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("aRTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm gastro_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("gastro2") modify
putexcel A1=matrix(r(table)), names
xi: glm coviddiag_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("coviddiag2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympsens_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("covidsympsens2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympspec_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("covidsympspec2") modify
putexcel A1=matrix(r(table)), names
xi: glm antibio_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("antibio2") modify
putexcel A1=matrix(r(table)), names
xi: glm adm_events user_rate i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval2.xlsx", sheet("adm2") modify
putexcel A1=matrix(r(table)), names
** B. Model user rate as categorical
xtile user_rate_over1pct_cat = user_rate, nq(3)
* i. deprivation as continuous
glm rti_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("RTI") replace
putexcel A1=matrix(r(table)), names
glm arti_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("aRTI") modify
putexcel A1=matrix(r(table)), names
glm gastro_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("gastro") modify
putexcel A1=matrix(r(table)), names
glm coviddiag_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("coviddiag") modify
putexcel A1=matrix(r(table)), names
glm covidsympsens_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("covidsympsens") modify
putexcel A1=matrix(r(table)), names
glm covidsympspec_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("covidsympspec") modify
putexcel A1=matrix(r(table)), names
glm antibio_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("antibio") modify
putexcel A1=matrix(r(table)), names
glm adm_events user_rate_over1pct_cat deprivation_pctile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("adm") modify
putexcel A1=matrix(r(table)), names
* ii. deprivation as categorical (deciles)
xi: glm rti_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("RTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm arti_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("aRTI2") modify
putexcel A1=matrix(r(table)), names
xi: glm gastro_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("gastro2") modify
putexcel A1=matrix(r(table)), names
xi: glm coviddiag_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("coviddiag2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympsens_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("covidsympsens2") modify
putexcel A1=matrix(r(table)), names
xi: glm covidsympspec_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("covidsympspec2") modify
putexcel A1=matrix(r(table)), names
xi: glm antibio_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("antibio2") modify
putexcel A1=matrix(r(table)), names
xi: glm adm_events user_rate_over1pct_cat i.deprivation_decile ethnic_minority_pct median_age, family(nb) link(log) exposure(list_size)
putexcel set "$gd/output/process_eval_cat2.xlsx", sheet("adm2") modify
putexcel A1=matrix(r(table)), names