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project.yaml
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project.yaml
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version: '3.0'
expectations:
population_size: 1000
actions:
generate_dataset_2019:
run: >
ehrql:v0
generate-dataset analysis/dataset_definition_2019.py
--output output/dataset_2019.arrow
outputs:
highly_sensitive:
cohort: output/dataset_2019.arrow
generate_dataset_2020:
run: >
ehrql:v0
generate-dataset analysis/dataset_definition_2020.py
--output output/dataset_2020.arrow
outputs:
highly_sensitive:
cohort: output/dataset_2020.arrow
generate_dataset_2021:
run: >
ehrql:v0
generate-dataset analysis/dataset_definition_2021.py
--output output/dataset_2021.arrow
outputs:
highly_sensitive:
cohort: output/dataset_2021.arrow
generate_dataset_2022:
run: >
ehrql:v0
generate-dataset analysis/dataset_definition_2022.py
--output output/dataset_2022.arrow
outputs:
highly_sensitive:
cohort: output/dataset_2022.arrow
generate_dataset_2023:
run: >
ehrql:v0
generate-dataset analysis/dataset_definition_2023.py
--output output/dataset_2023.arrow
outputs:
highly_sensitive:
cohort: output/dataset_2023.arrow
generate_report_notebook:
run: jupyter:latest jupyter nbconvert /workspace/analysis/notebooks/summarise_dataset.ipynb --execute --to html --output-dir=/workspace/output --no-input --ExecutePreprocessor.timeout=86400
needs: [generate_dataset_2019, generate_dataset_2020, generate_dataset_2021, generate_dataset_2022, generate_dataset_2023]
outputs:
moderately_sensitive:
notebook: output/summarise_dataset.html
prescribing_tables: output/prescribing*.csv
totals_tables: output/totals*.csv