generated from opensafely/research-template
/
project.yaml
80 lines (68 loc) · 2.6 KB
/
project.yaml
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version: '3.0'
expectations:
population_size: 100000
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_part1
outputs:
highly_sensitive:
cohort: output/input_part1.csv
data_cleaning:
run: stata-mp:latest analysis/010_cleaning.do
needs: [generate_cohort]
outputs:
highly_sensitive:
analysis_dataset: output/input_part1_clean.dta
matching_groups_1_and_2:
run: stata-mp:latest analysis/021_matching_groups_1_and_2.do
needs: [data_cleaning]
outputs:
highly_sensitive:
analysis_dataset: output/matched_groups_1_and_2.dta
matching_groups_1_and_3:
run: stata-mp:latest analysis/022_matching_groups_1_and_3.do
needs: [data_cleaning]
outputs:
highly_sensitive:
analysis_dataset: output/matched_groups_1_and_3.dta
matching_groups_1_2_and_3:
run: stata-mp:latest analysis/023_matching_groups_1_2_and_3.do
needs: [matching_groups_1_and_2, matching_groups_1_and_3]
outputs:
highly_sensitive:
analysis_dataset: output/matched_groups_1_2_and_3.dta
analyses_option1_table1:
run: stata-mp:latest analysis/110_analyses_option1_table1_demographics.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table1_demographics.dta
table2: output/results/option1_table1_demographics.csv
analyses_option1_table2:
run: stata-mp:latest analysis/120_analyses_option1_table2_rates.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table2_rates.dta
table2: output/results/option1_table2_rates.csv
analyses_option1_table3:
run: stata-mp:latest analysis/130_analyses_option1_table3_hazardratios.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table3_hazardratios.dta
table2: output/results/option1_table3_hazardratios.csv
analyses_option1_table4:
run: stata-mp:latest analysis/140_analyses_option1_table4_stratified_rates.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table4_stratified_rates.dta
table2: output/results/option1_table4_stratified_rates.csv
analyses_option1_table5:
run: stata-mp:latest analysis/150_analyses_option1_table5_stratified_hazardratios.do
needs: [data_cleaning]
outputs:
moderately_sensitive:
table1: output/results/option1_table5_stratified_hazardratios.dta
table2: output/results/option1_table5_stratified_hazardratios.csv