generate_all_charts_and_tables.py

from generate_paper_outputs import run
from custom_operations import practice_variation, current_variation, declined_vaccinated
import os

backend = os.getenv("OPENSAFELY_BACKEND", "expectations")
base_path = f"output/{backend}"
start_date = "2020-12-01"
end_date = "2021-04-14"

# create cumulative charts
run(base_path, start_date, end_date)


# create practice charts
practice_variation()

# create summary chart of patient vaccine statuses by priority group
current_variation()

# create summary chart of patients declining then accepting vaccines, by priority group
declined_vaccinated()