generated from opensafely/research-template
/
project.yaml
42 lines (31 loc) · 1.02 KB
/
project.yaml
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version: '3.0'
expectations:
population_size: 100000
actions:
## ####################################
## preliminaries
## ####################################
design:
run: r:latest analysis/design.R
outputs:
moderately_sensitive:
study_dates_json: output/lib/study_parameters.json
study_dates_rds: output/lib/study_parameters.rds
jcvi_groups: output/lib/jcvi_groups.csv
elig_dates: output/lib/elig_dates.csv
regions: output/lib/regions.csv
model_varlist: output/lib/model_varlist.rds
outcomes: output/lib/outcomes.rds
subgroups: output/lib/subgroups.rds
## ####################################
## study definition
## ####################################
## study definition
generate_study_population_tests:
run: cohortextractor:latest generate_cohort --study-definition study_definition_tests
--output-format csv
needs:
- design
outputs:
highly_sensitive:
cohort: output/input_tests.csv