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model.do
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model.do
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/*clear
import delimited `c(pwd)'/output/input.csv
clear
import delimited `c(pwd)'/output/input_2019.csv
*/
*import delimited `c(pwd)'/output/covid_vs_noncovid.csv
*import delimited `c(pwd)'/output/covid_vs_noncovid_2019.csv
*cd analysis
*DATA MANAGEMENT
do ./analysis/cr_create_analysis_dataset
do ./analysis/cr_create_analysis_dataset_2019
*TABLE 1 DESCRIPTIVES
do ./analysis/an_tablecontent_PublicationDescriptivesTable
*ABSOLUTE RISKS BY CAUSE OF DEATH (FIG 2)
do ./analysis/an_covid_vs_othercauses_abs_AGE
*SEPARATE AGE SEX-ADJUSTED and FULLY ADJUSTED "FACTORS ASSOC" LOGISTIC MODELS FOR COVID AND NON COVID DEATH, PLUS 2019 DEATH
do ./analysis/an_covidvsnoncovid_agesex
do ./analysis/an_covidvsnoncovid_full
do ./analysis/an_noncovid_2019_agesex.do
do ./analysis/an_noncovid_2019_full.do
*FOREST PLOT (PROCESSING OF ABOVE RR ESTIMATES) (FIG 3)
do ./analysis/an_processout_agesex_covvsnon_forestplots
*TABLE OF AGE-SEX ADJ ESTIMATES PLUS FULLY ADJ PLUS 2019 (APPX TABLE)
do ./analysis/an_processout_agesex_covvsnon_table
*ETHNICITY EFFECTS ON DIFFERENT CAUSE-SPECIFIC MORTALITY OUTCOMES (FIG 4)
do ./analysis/an_ethnicitybycod
*DEATHS ONLY LOGISTIC ANALYSIS
do ./analysis/an_deathsonlyanalysis
*FOREST PLOT OF DEATHS ONLY ANALYSIS
do ./analysis/an_processout_deathsonlyanalysis
*MI
/*
do ./analysis/an_impute_MAIN
do ./analysis/an_impute_SEPT2020
do ./analysis/an_impute_2019
*/