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01e_eth_cr_stset_confirmedcovid.do
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01e_eth_cr_stset_confirmedcovid.do
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/*==============================================================================
DO FILE NAME: 01e_eth_cr_stset_onsconfirmeddeath
PROJECT: Ethnicity
DATE: 6th Jan 2020
AUTHOR: Rohini Mathur
DESCRIPTION OF FILE: program 01, data management for project
reformat variables
categorise variables
label variables
apply exclusion criteria
DATASETS USED: data in memory (from analysis/input.csv)
DATASETS CREATED: none
OTHER OUTPUT: logfiles, printed to folder analysis/$logdir
==============================================================================*/
* Open a log file
cap log close
log using ./logs/01e_eth_cr_stset_onsconfirmeddeath.log, replace t
****************************************************************
* Create outcome specific datasets for the whole population *
*****************************************************************
use ./output/analysis_dataset.dta, clear
drop if onsconfirmeddeath_date <= indexdate
stset stime_onsconfirmeddeath, fail(onsconfirmeddeath) ///
id(patient_id) enter(indexdate) origin(indexdate)
save ./output/analysis_dataset_STSET_onsconfirmeddeath.dta, replace
* Close log file
log close