project.yaml

version: "3.0"

expectations:
  population_size: 100000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  W2_generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_W2
    outputs:
      highly_sensitive:
        cohort: output/input_W2.csv

  01_hhClassif_cr_analysis_dataset:
    run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do MAIN
    needs: [generate_cohort]
    outputs:
      highly_sensitive:
        # allHHSizes: output/allHH_beforeDropping_largerThan10_MAIN.dta
        allHHSizes1_20: output/allHH_sizedBetween1And20_MAIN.dta
        allHHSizes1_12Incl: output/allHH_sizedBetween1And12_MAIN.dta
        allvars: output/hhClassif_analysis_datasetMAIN.dta
        allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityMAIN.dta
        allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*MAIN.dta 
        allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*MAIN.dta 
      moderately_sensitive:
        log: logs/01_hhClassif_cr_analysis_dataset.log

  01_hhClassif_cr_analysis_dataset_W2:
    run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do W2
    needs: [W2_generate_cohort]
    outputs:
      highly_sensitive:
        # allHHSizes: output/allHH_beforeDropping_largerThan10_W2.dta
        allHHSizes1_12Incl: output/allHH_sizedBetween1And12_W2.dta
        allHHSizes1_20: output/allHH_sizedBetween1And20_W2.dta
        allvars: output/hhClassif_analysis_datasetW2.dta
        allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityW2.dta
        allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*W2.dta 
        allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*W2.dta 
      moderately_sensitive:
        log: logs/01_hhClassif_cr_analysis_dataset_W2.log


  01c_SensAnalysis_Age60_hhClassif_cr_analysis_dataset_W2:
    run: stata-mp:latest analysis/01c_SensAnalysis1_Age60_hhClassif_cr_analysis_dataset.do W2
    needs: [W2_generate_cohort]
    outputs:
      highly_sensitive:
        allvars: output/SensAnalysis1_Age60_datasetW2.dta
        allVarsAgeSpline: output/SensAnalysis1_Age60_dataset_ageband_*W2.dta 
        allVarsAgeStratStset: output/SensAnalysis1_Age60_dataset_STSET_*_ageband_*W2.dta 
      moderately_sensitive:
        log: logs/01c_SensAnalysis1_Age60_hhClassif_cr_analysis_dataset_W2.log

  02_hhClassif_an_data_checks:
    run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/02_hhClassif_an_data_checks.log

  02_hhClassif_an_data_checks_W2:
    run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/02_hhClassif_an_data_checks_W2.log

  02b_hhClassif_an_checking_hhVars:
    run: stata-mp:latest analysis/02b_hhClassif_an_checking_hhVars.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/02b_hhClassif_an_checking_hhVars_MAIN.log
        #table: output/02b_hhClassif_an_checking_hhVars_MAIN.txt

  02b_hhClassif_an_checking_hhVars_W2:
    run: stata-mp:latest analysis/02b_hhClassif_an_checking_hhVars.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/02b_hhClassif_an_checking_hhVars_W2.log
        #table: output/02b_hhClassif_an_checking_hhVars_W2.txt

  03a_hhClassif_an_hist_hhSizebyEthnicity:
    run: stata-mp:latest analysis/03a_hhClassif_an_hist_hhSizebyEthnicity.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03a_hhClassif_an_hist_hhSizebyEthnicity_MAIN.log
        gph1: output/overallHHSizeDist_MAIN.gph 
        gph2: output/whiteHHSizeDist_MAIN.gph 
        gph3: output/southAsianHHSizeDist_MAIN.gph
        gph4: output/blackHHSizeDist_MAIN.gph
        gph5: output/HHdistHists_MAIN.pdf

  03b_hhClassif_an_hist_ov65hhSizebyEthnicity:
    run: stata-mp:latest analysis/03b_hhClassif_an_hist_ov65hhSizebyEthnicity.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03b_hhClassif_an_hist_ov65hhSizebyEthnicity_MAIN.log
        gph1: output/ov65OverallHHSizeDist_MAIN.gph 
        gph2: output/ov65WhiteHHSizeDist_MAIN.gph 
        gph3: output/ov65SouthAsianHHSizeDist_MAIN.gph
        gph4: output/ov65BlackHHSizeDist_MAIN.gph
        gph5: output/ov65HHdistHists_MAIN.pdf

  03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge:
    run: stata-mp:latest analysis/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      highly_sensitive:
        over65OnlyHH: output/housesWithOnly65yrOldsInThem_MAIN.dta
      moderately_sensitive:
        log: logs/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge_MAIN.log
        gph1: output/ov65OverallHHSizeDist_woAllSameAge_MAIN.gph 
        gph2: output/ov65WhiteHHSizeDist_woAllSameAge_MAIN.gph 
        gph3: output/ov65SouthAsianHHSizeDist_woAllSameAge_MAIN.gph
        gph4: output/ov65BlackHHSizeDist_woAllSameAge_MAIN.gph
        gph5: output/ov65HHdistHists_woAllSameAge_MAIN.pdf

  03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban:
    run: stata-mp:latest analysis/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban_MAIN.log
        gph1: output/ov65OverallHHSizeDist_*_MAIN.gph 
        gph2: output/ov65WhiteHHSizeDist_*_MAIN.gph 
        gph3: output/ov65SouthAsianHHSizeDist_*_MAIN.gph
        gph4: output/ov65BlackHHSizeDist_*_MAIN.gph
        gph5: output/ov65HHdistHists_*_MAIN.pdf

  03e_hhClassif_an_descriptive_table_1:
    run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        # log: logs/03e_hhClassif_an_descriptive_table_1_MAIN.log
        # tableTxt: output/table1_hhClassifMAIN.txt
        log: logs/03e_hhClassif_hhComp_vs_hhSize_MAIN.log
       

  03e_hhClassif_an_descriptive_table_1_W2:
    run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        # log: logs/03e_hhClassif_an_descriptive_table_1_W2.log
        # tableTxt: output/table1_hhClassifW2.txt
        log: logs/03e_hhClassif_hhComp_vs_hhSize_W2.log
      

  03f_hhClassif_an_descriptive_table_1_sepEthnicities:
    run: stata-mp:latest analysis/03f_hhClassif_an_descriptive_table_1_sepEthnicities.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03f_hhClassif_an_descriptive_table_1_sepEthnicities_MAIN.log
        tableTxt: output/table1_hhClassif_byEthnicityMAIN.txt
      

  03f_hhClassif_an_descriptive_table_1_sepEthnicities_W2:
    run: stata-mp:latest analysis/03f_hhClassif_an_descriptive_table_1_sepEthnicities.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/03f_hhClassif_an_descriptive_table_1_sepEthnicities_W2.log
        tableTxt: output/table1_hhClassif_byEthnicityW2.txt
      

  04_hhClassif_an_univariable_analysis:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/04_hhClassif_an_univariable_analysis_MAIN.log
        data: output/hhClassif_univariableAnalysis_*_ageband_*MAIN.ster

  04_hhClassif_an_univariable_analysis_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do W2
    outputs:
      moderately_sensitive:
        log: logs/04_hhClassif_an_univariable_analysis_W2.log
        data: output/hhClassif_univariableAnalysis_*_ageband_*W2.ster

  05_hhClassif_an_multivariable_analysis:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/05_hhClassif_an_multivariable_analysis_MAIN.log
        data: output/hhClassif_multivariableAllEthnicities_*_ageband_*MAIN.ster

  05_hhClassif_an_multivariable_analysis_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do W2
    outputs:
      moderately_sensitive:
        log: logs/05_hhClassif_an_multivariable_analysis_W2.log
        data: output/hhClassif_multivariableAllEthnicities_*_ageband_*W2.ster

  06_hhClassif_an_multivariable_analysis_eth5Interaction:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/06_hhClassif_an_eth5Interaction_analysis_MAIN.log

  06_hhClassif_an_multivariable_analysis_eth5Interaction_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do W2
    outputs:
      moderately_sensitive:
        log: logs/06_hhClassif_an_eth5Interaction_analysis_W2.log

  07_hhClassif_an_multivariable_analysis_perEth5Group:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_MAIN.log
        data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*MAIN.ster

  07_hhClassif_an_multivariable_analysis_perEth5Group_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do W2
    outputs:
      moderately_sensitive:
        log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_W2.log
        data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*W2.ster

  08_hhClassif_an_mv_analysis_perEth5Group_HR_table:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_MAIN.log
        log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_MAIN.log
        log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_MAIN.log
        log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_MAIN.log
        table1: output/hhClassif_tablecontents_HRtable_covidDeath_MAIN.txt
        table2: output/hhClassif_tablecontents_HRtable_covidHosp_MAIN.txt
        table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_MAIN.txt
        table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_MAIN.txt


  08_hhClassif_an_mv_analysis_perEth5Group_HR_table_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do W2
    outputs:
      moderately_sensitive:
        log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_W2.log
        log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_W2.log
        log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_W2.log
        log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_W2.log
        table1: output/hhClassif_tablecontents_HRtable_covidDeath_W2.txt
        table2: output/hhClassif_tablecontents_HRtable_covidHosp_W2.txt
        table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_W2.txt
        table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_W2.txt

  09_hhClassif_an_mv_analysis_perEth16Group_HR_table:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_MAIN.log
        # log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_MAIN.log
        log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_MAIN.log
        # log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_MAIN.log
        # table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_MAIN.txt
        table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_MAIN.txt
        # table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_MAIN.txt


  09_hhClassif_an_mv_analysis_perEth16Group_HR_table_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_W2.log
        # log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_W2.log
        log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_W2.log
        # log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_W2.txt
        # table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_W2.txt
        table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_W2.txt
        # table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_W2.txt

  10_hh_imd_descriptives_W1:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/10_hh_imd_descriptives_W1.do
    outputs:
      moderately_sensitive:
        log: logs/10_eth_imd_descriptives_W1.log
        # table: output/table_ethnicity_descriptivesMAIN.txt

  11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        log3: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHospOrDeath_MAIN.log
        # log4: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_nonCovidDeath_MAIN.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        # table3: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHospOrDeath_MAIN.txt
        # table4: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_nonCovidDeath_MAIN.txt

  11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_W2.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_W2.log
          log3: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHospOrDeath_W2.log
        # log4: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_W2.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_W2.txt
        # table3: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHospOrDeath_W2.txt
        # table4: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_nonCovidDeath_W2.txt

  11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        # log3: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_covidHospOrDeath_MAIN.log
        log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_MAIN.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        # table3: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_covidHospOrDeath_MAIN.txt
        table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_MAIN.txt

  11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        # log3: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_covidHospOrDeath_W2.log
        log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        # table3: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_covidHospOrDeath_W2.txt
        table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt

  12_hhClassif_an_MV_analysis_W_SA_multipleInteractions:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/12_hhClassif_an_MV_analysis_W_SA_multipleInteractions.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_MAIN.log

  12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/12_hhClassif_an_MV_analysis_W_SA_multipleInteractions.do W2
    outputs:
      moderately_sensitive:
        log: logs/12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_W2.log

  13_hhClassif_an_MV_analysis_test_for_trend:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/13_hhClassif_an_MV_analysis_test_for_trend.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/13_hhClassif_an_MV_analysis_test_for_trend_MAIN.log

  13_hhClassif_an_MV_analysis_test_for_trend_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/13_hhClassif_an_MV_analysis_test_for_trend.do W2
    outputs:
      moderately_sensitive:
        log: logs/13_hhClassif_an_MV_analysis_test_for_trend_W2.log

  14_hhClassif_an_MV_analyses_p_values_for_var_associations:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/14_hhClassif_an_MV_analyses_p_values_for_var_associations.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/14_hhClassif_an_MV_analyses_p_values_for_var_associations_MAIN.log

  14_hhClassif_an_MV_analyses_p_values_for_var_associations_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/14_hhClassif_an_MV_analyses_p_values_for_var_associations.do W2
    outputs:
      moderately_sensitive:
        log: logs/14_hhClassif_an_MV_analyses_p_values_for_var_associations_W2.log

  15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/15_hhClassif_forForestPlot_covidDeath_MAIN.log
        log2: logs/15_hhClassif_forForestPlot_covidHosp_MAIN.log
        log3: logs/15_hhClassif_forForestPlot_covidHospOrDeath_MAIN.log
        log4: logs/15_hhClassif_forForestPlot_nonCovidDeath_MAIN.log
        table1: output/15_hhClassif_forForestPlot_covidDeath_MAIN.txt
        table2: output/15_hhClassif_forForestPlot_covidHosp_MAIN.txt
        table3: output/15_hhClassif_forForestPlot_covidHospOrDeath_MAIN.txt
        table4: output/15_hhClassif_forForestPlot_nonCovidDeath_MAIN.txt


  15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot.do W2
    outputs:
      moderately_sensitive:
        log1: logs/15_hhClassif_forForestPlot_covidDeath_W2.log
        log2: logs/15_hhClassif_forForestPlot_covidHosp_W2.log
        log3: logs/15_hhClassif_forForestPlot_covidHospOrDeath_W2.log
        log4: logs/15_hhClassif_forForestPlot_nonCovidDeath_W2.log
        table1: output/15_hhClassif_forForestPlot_covidDeath_W2.txt
        table2: output/15_hhClassif_forForestPlot_covidHosp_W2.txt
        table3: output/15_hhClassif_forForestPlot_covidHospOrDeath_W2.txt
        table4: output/15_hhClassif_forForestPlot_nonCovidDeath_W2.txt


  16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/16_hhClassif_forForestPlot_covidHospOrDeath_MAIN.log
        table1: output/16_hhClassif_forForestPlot_covidHospOrDeath_MAIN.txt

  16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot.do W2
    outputs:
      moderately_sensitive:
        log1: logs/16_hhClassif_forForestPlot_covidHospOrDeath_W2.log
        table1: output/16_hhClassif_forForestPlot_covidHospOrDeath_W2.txt


  17_hhClassif_an_Additional_Descriptive_Tables:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/17_hhClassif_an_Additional_Descriptive_Tables.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/17_hhClassif_an_Additional_Descriptive_Tables_MAIN.log

  17_hhClassif_an_Additional_Descriptive_Tables_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/17_hhClassif_an_Additional_Descriptive_Tables.do W2
    outputs:
      moderately_sensitive:
        log: logs/17_hhClassif_an_Additional_Descriptive_Tables_W2.log