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project.yaml
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project.yaml
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version: '3.0'
expectations:
population_size: 1000
actions:
generate_2wwcolorectal_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2wwcolorectal
outputs:
highly_sensitive:
cohort: output/input_2wwcolorectal.csv
describe:
run: python:latest python analysis/report_2wwcolorectal.py
needs: [generate_2wwcolorectal_cohort]
outputs:
moderately_sensitive:
all_figure: output/colorectal_cancer_10.jpg
all_figure2: output/colorectal_cancer_11.jpg
all_figure3: output/colorectal_cancer_12.jpg
all_figure4: output/colorectal_cancer_13.jpg
all_figure5: output/colorectal_cancer_14.jpg
all_figure6: output/colorectal_cancer_15.jpg
all_figure7: output/colorectal_cancer_16.jpg
all_figure8: output/colorectal_cancer_17.jpg
all_figure9: output/colorectal_cancer_18.jpg
all_figure10: output/colorectal_cancer_19.jpg
all_figure11: output/colorectal_cancer_20.jpg