Jupyter notebooks to train Stardist models
stardist.txt env for training notebook stardist_export_TF1.txt env for saving model to tensorflow 1 version compatible with stardis
training : (run the script in stardist conda env) data.ipynb loading images training and validations training.ipynb training model prediction.ipynb test model
Export model (run the script in stardist_export_TF1 conda env) exportTf1Model.py to use run the script in stardist_export_TF1 conda env
pmls2 model for pml fociRNA_1.0/1 model trained on RNA scope (Selimi team) fociRNA_1.2 model trained with a mix RNA scope / PML
stardist_Foci_extport Export foci detection to roi manager file
- Stardist conda environment
Version 1 released on January 5, 2023.