/
RiboTaxa_py36_requirements.yml
682 lines (682 loc) · 23 KB
/
RiboTaxa_py36_requirements.yml
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name: RiboTaxa_py36
channels:
- qiime2/label/r2022.11
- https://packages.qiime2.org/qiime2/2022.11/passed/core/
- conda-forge
- bioconda
- defaults
- biobakery
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.8=h166bdaf_0
- anyio=3.6.2=pyhd8ed1ab_0
- argcomplete=2.0.0=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py38h0a891b7_3
- astor=0.8.1=pyh9f0ad1d_0
- asttokens=2.2.1=pyhd8ed1ab_0
- atpublic=3.0.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=22.2.0=pyh71513ae_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.1=pyha770c72_0
- bibtexparser=1.4.0=pyhd8ed1ab_0
- binutils_impl_linux-64=2.39=he00db2b_1
- bioconductor-ancombc=2.0.1=r42hdfd78af_0
- bioconductor-beachmat=2.14.0=r42hc247a5b_0
- bioconductor-biobase=2.58.0=r42hc0cfd56_0
- bioconductor-biocbaseutils=1.0.0=r42hdfd78af_0
- bioconductor-biocgenerics=0.44.0=r42hdfd78af_0
- bioconductor-biocneighbors=1.16.0=r42hc247a5b_0
- bioconductor-biocparallel=1.32.5=r42hc247a5b_0
- bioconductor-biocsingular=1.14.0=r42hc247a5b_0
- bioconductor-biomformat=1.26.0=r42hdfd78af_0
- bioconductor-biostrings=2.66.0=r42hc0cfd56_0
- bioconductor-dada2=1.26.0=r42hc247a5b_0
- bioconductor-data-packages=20221112=hdfd78af_0
- bioconductor-decipher=2.26.0=r42hc0cfd56_0
- bioconductor-decontam=1.18.0=r42hdfd78af_0
- bioconductor-delayedarray=0.24.0=r42hc0cfd56_0
- bioconductor-delayedmatrixstats=1.20.0=r42hdfd78af_0
- bioconductor-dirichletmultinomial=1.40.0=r42hda872b5_0
- bioconductor-genomeinfodb=1.34.1=r42hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0
- bioconductor-genomicalignments=1.34.0=r42hc0cfd56_0
- bioconductor-genomicranges=1.50.0=r42hc0cfd56_0
- bioconductor-iranges=2.32.0=r42hc0cfd56_0
- bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0
- bioconductor-mia=1.6.0=r42hdfd78af_0
- bioconductor-multiassayexperiment=1.24.0=r42hdfd78af_0
- bioconductor-multtest=2.54.0=r42hc0cfd56_0
- bioconductor-phyloseq=1.42.0=r42hdfd78af_0
- bioconductor-rhdf5=2.42.0=r42hbe1951d_1
- bioconductor-rhdf5filters=1.10.0=r42hc247a5b_0
- bioconductor-rhdf5lib=1.20.0=r42hc0cfd56_0
- bioconductor-rhtslib=2.0.0=r42hc0cfd56_0
- bioconductor-rsamtools=2.14.0=r42hc247a5b_0
- bioconductor-s4vectors=0.36.0=r42hc0cfd56_0
- bioconductor-scaledmatrix=1.6.0=r42hdfd78af_0
- bioconductor-scater=1.26.0=r42hdfd78af_0
- bioconductor-scuttle=1.8.0=r42hc247a5b_0
- bioconductor-shortread=1.56.0=r42hc247a5b_0
- bioconductor-singlecellexperiment=1.20.0=r42hdfd78af_0
- bioconductor-sparsematrixstats=1.10.0=r42hc247a5b_0
- bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0
- bioconductor-treeio=1.22.0=r42hdfd78af_0
- bioconductor-treesummarizedexperiment=2.6.0=r42hdfd78af_0
- bioconductor-xvector=0.38.0=r42hc0cfd56_0
- bioconductor-zlibbioc=1.44.0=r42hc0cfd56_0
- biom-format=2.1.12=py38h26c90d9_2
- blast=2.13.0=hf3cf87c_0
- bleach=5.0.1=pyhd8ed1ab_0
- bokeh=3.0.3=pyhd8ed1ab_0
- bowtie2=2.5.0=py38h77f66f0_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py38h0a891b7_1005
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.12.7=ha878542_0
- cachecontrol=0.12.11=pyhd8ed1ab_0
- cached_property=1.5.2=pyha770c72_1
- cairo=1.16.0=ha61ee94_1014
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py38h4a40e3a_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.2=pyhd8ed1ab_0
- contourpy=1.0.6=py38h43d8883_0
- cryptography=39.0.0=py38h1724139_0
- curl=7.87.0=h6312ad2_0
- cutadapt=4.2=py38hbff2b2d_0
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.33=py38h8dc9893_0
- dbus=1.13.6=h5008d03_3
- deblur=1.1.1=pyhdfd78af_0
- debugpy=1.6.5=py38h8dc9893_0
- decorator=4.4.2=py_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dendropy=4.5.2=pyh3252c3a_0
- dill=0.3.6=pyhd8ed1ab_1
- dnaio=0.10.0=py38hbff2b2d_0
- emperor=1.0.3=py38h578d9bd_0
- entrez-direct=16.2=he881be0_1
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.1.0=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fastcluster=1.2.6=py38h8f669ce_2
- fasttree=2.1.11=hec16e2b_1
- fftw=3.3.10=nompi_hf0379b8_106
- flit-core=3.8.0=pyhd8ed1ab_0
- flufl.lock=7.1=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py38h0a891b7_1
- formulaic=0.5.2=pyhd8ed1ab_0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=pyhd8ed1ab_6
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- giflib=5.2.1=h36c2ea0_2
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- gneiss=0.4.6=py_0
- graphite2=1.3.13=h58526e2_1001
- graphlib-backport=1.0.3=pyhd8ed1ab_0
- gsl=2.7.1=h6e86dc7_1
- gst-plugins-base=1.21.3=h4243ec0_1
- gstreamer=1.21.3=h25f0c4b_1
- gstreamer-orc=0.4.33=h166bdaf_0
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- h5py=2.10.0=nompi_py38h9915d05_106
- harfbuzz=6.0.0=h8e241bc_0
- hdf5=1.10.6=nompi_h6a2412b_1114
- hdmedians=0.14.2=py38h26c90d9_3
- hmmer=3.1b2=3
- htslib=1.16=h6bc39ce_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- ijson=3.2.0.post0=pyhd8ed1ab_0
- importlib-metadata=4.8.3=py38h578d9bd_0
- importlib_metadata=4.8.3=hd8ed1ab_0
- importlib_resources=5.10.2=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- interface_meta=1.3.0=pyhd8ed1ab_0
- iow=1.0.5=py38h8ded8fe_1
- ipykernel=6.20.1=pyh210e3f2_0
- ipython=8.8.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.0.4=pyhd8ed1ab_0
- iqtree=2.2.0.3=hb97b32f_1
- isa-l=2.30.0=ha770c72_4
- jack=1.9.21=h583fa2b_2
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- jq=1.6=h36c2ea0_1000
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=7.4.8=pyhd8ed1ab_0
- jupyter_core=5.1.3=py38h578d9bd_0
- jupyter_events=0.6.2=pyhd8ed1ab_0
- jupyter_server=2.0.6=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.5=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py38h43d8883_1
- krb5=1.20.1=hf9c8cef_0
- lame=3.100=h166bdaf_1003
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcap=2.66=ha37c62d_0
- libcblas=3.9.0=16_linux64_openblas
- libclang=15.0.6=default_h2e3cab8_0
- libclang13=15.0.6=default_h3a83d3e_0
- libcups=2.3.3=h36d4200_3
- libcurl=7.87.0=h6312ad2_0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libflac=1.4.2=h27087fc_0
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libgpg-error=1.46=h620e276_0
- libhwloc=2.8.0=h32351e8_1
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libllvm11=11.1.0=he0ac6c6_5
- libllvm15=15.0.6=h63197d8_0
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.1=h2baec63_3
- libsanitizer=12.2.0=h46fd767_19
- libsndfile=1.2.0=hb75c966_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=252=h2a991cd_0
- libtiff=4.4.0=h0e0dad5_3
- libtool=2.4.7=h27087fc_0
- libudev1=252=h166bdaf_0
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.10.3=h7463322_0
- libxslt=1.1.37=h873f0b0_0
- libzlib=1.2.13=h166bdaf_4
- llvmlite=0.39.1=py38h38d86a4_1
- lockfile=0.12.2=py_1
- lxml=4.9.2=py38h215a2d7_0
- lz4=4.2.0=py38hd012fdc_0
- lz4-c=1.9.3=h9c3ff4c_1
- mafft=7.508=hec16e2b_0
- make=4.3=hd18ef5c_1
- markupsafe=2.1.1=py38h0a891b7_2
- matplotlib=3.6.0=py38h578d9bd_0
- matplotlib-base=3.6.0=py38hb021067_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.4=pyhd8ed1ab_0
- mpfr=4.1.0=h9202a9a_1
- mpg123=1.31.1=h27087fc_0
- msgpack-python=1.0.4=py38h43d8883_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.31=haf5c9bc_0
- mysql-libs=8.0.31=h28c427c_0
- natsort=8.2.0=pyhd8ed1ab_0
- nbclassic=0.4.8=pyhd8ed1ab_0
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert=7.2.7=pyhd8ed1ab_0
- nbconvert-core=7.2.7=pyhd8ed1ab_0
- nbconvert-pandoc=7.2.7=pyhd8ed1ab_0
- nbformat=5.7.1=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=3.0=pyhd8ed1ab_0
- nlopt=2.7.1=py38hca016a5_3
- nose=1.3.7=py_1006
- notebook=6.5.2=pyha770c72_1
- notebook-shim=0.2.2=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.82=he02c5a1_0
- numba=0.56.4=py38h9a4aae9_0
- numpy=1.23.5=py38h7042d01_0
- oniguruma=6.9.8=h166bdaf_0
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- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
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- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
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- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xyzservices=2022.9.0=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
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- zstandard=0.19.0=py38h5945529_1
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prefix: /home/oschakoo/miniconda3/envs/RiboTaxa_py36