Gazebo7 fails to build with hdf5 on Ubuntu Trusty

[osrf-migration]

Original report (archived issue) by Jose Luis Rivero (Bitbucket: Jose Luis Rivero, GitHub: j-rivero).

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Using the gazebo7-7.0.0~pre1 on Ubuntu Trusty and enabling the support for HDF5 by following the HDF5 tutorial, the linker displays an error when trying to link gzserver.

Linking CXX executable gzserver
cd /home/jrivero/code/gazebo/build/gazebo && /usr/bin/cmake -E cmake_link_script CMakeFiles/gzserver.dir/link.txt --verbose=1
/usr/bin/c++    -std=c++11  -Wall -Wextra -Wno-long-long -Wno-unused-value -Wno-unused-value -Wno-unused-value -Wno-unused-value -Wfloat-equal -Wshadow -Winit-self -Wswitch-default -Wmissing-include-dirs -pedantic -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11  -g -O2 -mssse3 -msse3 -mfpmath=sse -msse -msse2     CMakeFiles/gzserver.dir/server_main.cc.o  -o "gzserver-7.0.0~pre1"  -L/home/jrivero/code/gazebo/build/test  -L/usr/lib/bullet_2.82 -rdynamic "libgazebo.so.7.0.0~pre1" "common/libgazebo_common.so.7.0.0~pre1" "util/libgazebo_util.so.7.0.0~pre1" "transport/libgazebo_transport.so.7.0.0~pre1" "physics/libgazebo_physics.so.7.0.0~pre1" "sensors/libgazebo_sensors.so.7.0.0~pre1" "rendering/libgazebo_rendering.so.7.0.0~pre1" "msgs/libgazebo_msgs.so.7.0.0~pre1" -lfreeimage -ltbb -lpthread "physics/libgazebo_physics.so.7.0.0~pre1" "util/libgazebo_util.so.7.0.0~pre1" -ltinyxml2 "../deps/opende/libgazebo_ode.so.7.0.0~pre1" "../deps/opende/GIMPACT/libgazebo_gimpact.so.7.0.0~pre1" "../deps/opende/ou/libgazebo_opende_ou.so.7.0.0~pre1" -lccd -lhdf5 -lz -lm "../deps/opende/OPCODE/libgazebo_opcode.so.7.0.0~pre1" -lBulletSoftBody -lBulletDynamics -lBulletCollision -lLinearMath /usr/lib/libdart-core.so.4.3.5 -lfcl -lccd -lassimp -lglut -lXmu -lXi -lSimTKsimbody -lSimTKmath -lSimTKcommon -lblas -llapack -lblas -llapack -ldl -lOgreRTShaderSystem -lOgreMain -lpthread -lOgreTerrain -lOgrePaging -lOgreMain -lpthread -lOgreTerrain -lOgrePaging "transport/libgazebo_transport.so.7.0.0~pre1" -lOgreRTShaderSystem -lOgreMain -lOgreTerrain -lOgrePaging -lOgreMain -lOgreTerrain -lOgrePaging -lGLU -lGL -lSM -lICE -lX11 -lXext -lX11 "msgs/libgazebo_msgs.so.7.0.0~pre1" "common/libgazebo_common.so.7.0.0~pre1" -lfreeimage -ldl -ltinyxml -lavcodec -lavformat -lavutil -lcurl -lswscale -ltar -ltbb -lsdformat -lrt -lgts -lm -lgthread-2.0 -lgmodule-2.0 -lglib-2.0 -lopenal -lgdal -lprotobuf -lpthread "math/libgazebo_math.so.7.0.0~pre1" /usr/lib/x86_64-linux-gnu/libignition-math2.so.2.3.0 -lboost_thread -lboost_signals -lboost_system -lboost_filesystem -lboost_program_options -lboost_regex -lboost_iostreams -lboost_date_time -lpthread -Wl,-rpath,/home/jrivero/code/gazebo/build/test:/usr/lib/bullet_2.82:/home/jrivero/code/gazebo/build/gazebo:/home/jrivero/code/gazebo/build/gazebo/common:/home/jrivero/code/gazebo/build/gazebo/util:/home/jrivero/code/gazebo/build/gazebo/transport:/home/jrivero/code/gazebo/build/gazebo/physics:/home/jrivero/code/gazebo/build/gazebo/sensors:/home/jrivero/code/gazebo/build/gazebo/rendering:/home/jrivero/code/gazebo/build/gazebo/msgs:/home/jrivero/code/gazebo/build/deps/opende:/home/jrivero/code/gazebo/build/deps/opende/GIMPACT:/home/jrivero/code/gazebo/build/deps/opende/ou:/home/jrivero/code/gazebo/build/deps/opende/OPCODE:/home/jrivero/code/gazebo/build/gazebo/math: 
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::PredType::NATIVE_INT16'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::FloatType::FloatType(H5::PredType const&)'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::CommonFG::getNumObjs() const'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::FloatType::~FloatType()'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `typeinfo for H5::FileIException'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::DataSpace::operator=(H5::DataSpace const&)'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::FileAccPropList::DEFAULT'
../deps/opende/libgazebo_ode.so.7.0.0~pre1: undefined reference to `H5::DataSet::write(void const*, H5::DataType const&, H5::DataSpace const&, H5::DataSpace const&, H5::DSetMemXferPropList const&) const'
...

[osrf-migration]

Original comment by Jose Luis Rivero (Bitbucket: Jose Luis Rivero, GitHub: j-rivero).

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• Edited issue description

[osrf-migration]

Original comment by Steve Peters (Bitbucket: Steven Peters, GitHub: scpeters).

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See also:

• #!/HDF 5 tutorial osrf/gazebo_tutorials#40/hdf-5-tutorial

[osrf-migration]

Original comment by Nate Koenig (Bitbucket: Nathan Koenig).

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• set version to "all"

[osrf-migration]

Original comment by Steve Peters (Bitbucket: Steven Peters, GitHub: scpeters).

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see pull request #2669

[osrf-migration]

Original comment by Steve Peters (Bitbucket: Steven Peters, GitHub: scpeters).

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• changed state from "new" to "resolved"

pull request #2669