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It is not a bug it is a "feature". The Custom log pattern will be used if they are the best parser for a file. But if more than one parser can parse one file it is random witch parser is used.
In 1.4.16 we added a feature to chose one of the working parser: see #593
Version 1.4.13
Custom log patterns no longer appear in GUI, neither in menu.
Also, file http://wiki.otroslogviewer.googlecode.com/git/rePattern-ex2.png is not available, from wiki
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