The list of package version requirements is available in setup.py, and will be automatically installed along PyDESeq2 when using PyPI. For reference, the code was tested with python 3.9 and the following package versions:
- numpy==1.23.0
- pandas==1.4.3
- scikit-learn==1.1.1
- scipy==1.11.0Please don't hesitate to open an issue in case you encounter any problems due to possible deprecations.