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pydeseq2.dds.DeseqDataSet.rst

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pydeseq2.dds.DeseqDataSet

.. currentmodule:: pydeseq2.dds


.. autoclass:: pydeseq2.dds.DeseqDataSet

    .. rubric:: Methods

    .. autosummary::

        ~DeseqDataSet.calculate_cooks
        ~DeseqDataSet.deseq2
        ~DeseqDataSet.fit_LFC
        ~DeseqDataSet.fit_MAP_dispersions
        ~DeseqDataSet.fit_dispersion_prior
        ~DeseqDataSet.fit_dispersion_trend
        ~DeseqDataSet.fit_genewise_dispersions
        ~DeseqDataSet.fit_size_factors
        ~DeseqDataSet.refit