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__init__.py
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__init__.py
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import shutil
import pyoxigraph as ox
from rdflib import Graph
from rdflib.graph import DATASET_DEFAULT_GRAPH_ID
from rdflib.query import Result
from rdflib.store import VALID_STORE, Store
from rdflib.term import BNode, Literal, Node, URIRef, Variable
__all__ = ["OxigraphStore"]
class OxigraphStore(Store):
context_aware = True
formula_aware = False
transaction_aware = False
graph_aware = True
def __init__(self, configuration=None, identifier=None):
self._store = None
self._prefix_for_namespace = {}
self._namespace_for_prefix = {}
super().__init__(configuration, identifier)
def open(self, configuration, create=False):
if self._store is not None:
raise ValueError("The open function should be called before any RDF operation")
self._store = ox.Store(configuration)
return VALID_STORE
def close(self, commit_pending_transaction=False):
del self._store
def destroy(self, configuration):
shutil.rmtree(configuration)
def gc(self):
pass
@property
def _inner(self):
if self._store is None:
self._store = ox.Store()
return self._store
def add(self, triple, context, quoted=False):
if quoted:
raise ValueError("Oxigraph stores are not formula aware")
self._inner.add(_to_ox(triple, context))
super().add(triple, context, quoted)
def remove(self, triple, context=None):
for q in self._inner.quads_for_pattern(*_to_ox_quad_pattern(triple, context)):
self._inner.remove(q)
super().remove(triple, context)
def triples(self, triple_pattern, context=None):
return (_from_ox(q) for q in self._inner.quads_for_pattern(*_to_ox_quad_pattern(triple_pattern, context)))
def __len__(self, context=None):
if context is None:
# TODO: very bad
return len({q.triple for q in self._inner})
else:
return sum(1 for _ in self._inner.quads_for_pattern(None, None, None, _to_ox(context)))
def contexts(self, triple=None):
if triple is None:
return (_from_ox(g) for g in self._inner.named_graphs())
else:
return (_from_ox(q[3]) for q in self._inner.quads_for_pattern(*_to_ox_quad_pattern(triple)))
def query(self, query, initNs, initBindings, queryGraph, **kwargs):
initNs = dict(self._namespace_for_prefix, **initNs)
query = "".join(f"PREFIX {prefix}: <{namespace}>\n" for prefix, namespace in initNs.items()) + query
if initBindings:
query += "\nVALUES ( {} ) {{ ({}) }}".format(
" ".join(f"?{k}" for k in initBindings.keys()), " ".join(v.n3() for v in initBindings.values())
)
result = self._inner.query(
query,
use_default_graph_as_union=queryGraph == "__UNION__",
default_graph=_to_ox(queryGraph) if isinstance(queryGraph, Node) else None,
)
if isinstance(result, bool):
out = Result("ASK")
out.askAnswer = result
elif isinstance(result, ox.QuerySolutions):
out = Result("SELECT")
out.vars = [Variable(v.value) for v in result.variables]
out.bindings = ({v: _from_ox(val) for v, val in zip(out.vars, solution)} for solution in result)
elif isinstance(result, ox.QueryTriples):
out = Result("CONSTRUCT")
out.graph = Graph()
out.graph += (_from_ox(t) for t in result)
else:
raise ValueError(f"Unexpected query result: {result}")
return out
def update(self, update, initNs, initBindings, queryGraph, **kwargs):
raise NotImplementedError
def commit(self):
# TODO: implement
pass
def rollback(self):
# TODO: implement
pass
def add_graph(self, graph):
self._inner.add_graph(_to_ox(graph))
def remove_graph(self, graph):
self._inner.remove_graph(_to_ox(graph))
def bind(self, prefix, namespace):
self._namespace_for_prefix[prefix] = namespace
self._prefix_for_namespace[namespace] = prefix
def prefix(self, namespace):
return self._prefix_for_namespace.get(namespace)
def namespace(self, prefix):
return self._namespace_for_prefix.get(prefix)
def namespaces(self):
yield from self._namespace_for_prefix.items()
def _to_ox(term, context=None):
if term is None:
return None
elif term == DATASET_DEFAULT_GRAPH_ID:
return ox.DefaultGraph()
elif isinstance(term, URIRef):
return ox.NamedNode(term)
elif isinstance(term, BNode):
return ox.BlankNode(term)
elif isinstance(term, Literal):
return ox.Literal(term, language=term.language, datatype=ox.NamedNode(term.datatype) if term.datatype else None)
elif isinstance(term, Graph):
return _to_ox(term.identifier)
elif isinstance(term, tuple):
if len(term) == 3:
return ox.Quad(_to_ox(term[0]), _to_ox(term[1]), _to_ox(term[2]), _to_ox(context))
elif len(term) == 4:
return ox.Quad(_to_ox(term[0]), _to_ox(term[1]), _to_ox(term[2]), _to_ox(term[3]))
else:
raise ValueError(f"Unexpected rdflib term: {repr(term)}")
else:
raise ValueError(f"Unexpected rdflib term: {repr(term)}")
def _to_ox_quad_pattern(triple, context=None):
(s, p, o) = triple
return _to_ox_term_pattern(s), _to_ox_term_pattern(p), _to_ox_term_pattern(o), _to_ox_term_pattern(context)
def _to_ox_term_pattern(term):
if term is None:
return None
elif isinstance(term, URIRef):
return ox.NamedNode(term)
elif isinstance(term, BNode):
return ox.BlankNode(term)
elif isinstance(term, Literal):
return ox.Literal(term, language=term.language, datatype=ox.NamedNode(term.datatype) if term.datatype else None)
elif isinstance(term, Graph):
return _to_ox(term.identifier)
else:
raise ValueError(f"Unexpected rdflib term: {repr(term)}")
def _from_ox(term):
if term is None:
return None
elif isinstance(term, ox.NamedNode):
return URIRef(term.value)
elif isinstance(term, ox.BlankNode):
return BNode(term.value)
elif isinstance(term, ox.Literal):
if term.language:
return Literal(term.value, lang=term.language)
else:
return Literal(term.value, datatype=URIRef(term.datatype.value))
elif isinstance(term, ox.DefaultGraph):
return None
elif isinstance(term, ox.Triple):
return _from_ox(term.subject), _from_ox(term.predicate), _from_ox(term.object)
elif isinstance(term, ox.Quad):
return (_from_ox(term.subject), _from_ox(term.predicate), _from_ox(term.object)), _from_ox(term.graph_name)
else:
raise ValueError(f"Unexpected Oxigraph term: {repr(term)}")