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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools", "setuptools-git-versioning<2"]
build-backend = "setuptools.build_meta"
[tool.setuptools-git-versioning]
enabled = true
[project]
name = "handygenome"
#version = "0.4.0"
dynamic = ["version"]
dependencies = [
"numpy",
"pandas",
"matplotlib",
"biopython >= 1.80",
"pysam",
"pyranges",
"scipy",
"scikit-learn",
"PyYAML",
"jupyterlab",
"notebook",
"ipympl",
"statsmodels",
#"pomegranate",
]
authors = [
{name="Ji-Hyung Park", email="p69180@gmail.com"},
]
description = "An integrated platform for genome sequencing analysis"
readme = "README.rst"
requires-python = ">=3.10"
classifiers = [
"Programming Language :: Python :: 3",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
]
[project.urls]
Documentation = "https://handygenome.readthedocs.io/en/latest/"
Repository = "https://github.com/p69180/handygenome.git"
[project.scripts]
#testprog = "handygenome.bin.testprog:main"
annotate-readstats = "handygenome.bin.annotate_readstats:main"
annotate-feature = "handygenome.bin.annotate_feature:main"
alignment = "handygenome.bin.alignment:main"
conda-wrapper = "handygenome.bin.conda_wrapper:main"
vcftotsv = "handygenome.bin.vcftotsv:main"