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Keyerror: "0000:query" #41
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Hi, thanks for using gget and for reaching out. Which gget version are you using? Could you please send me your exact command (including the sequence)? |
thank you for your response.
-the error is KeyError Traceback (most recent call last) ~/anaconda3/envs/openmm/lib/python3.7/site-packages/gget/gget_alphafold.py in alphafold(sequence, out, relax, plot, show_sidechains) ~/anaconda3/envs/openmm/lib/python3.7/site-packages/alphafold/notebooks/notebook_utils.py in merge_chunked_msa(results, max_hits) ~/anaconda3/envs/openmm/lib/python3.7/site-packages/alphafold/notebooks/notebook_utils.py in (.0) KeyError: '0000|query' |
Oddly, the same error occurs when plugging this sequence into the original Alphafold Colab and hence it is not a problem with the gget implementation. I’ll let them know and continue to trouble-shoot. |
thank you. |
i have used example sequence in the alphafold module and it works fine however when I give it a custom sequence it give the said error
Keyerror: "0000:query".
Please can you guide regarding the matter
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