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This repository has been archived by the owner on Mar 14, 2023. It is now read-only.

Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.

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PacificBiosciences/bam2fastx

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BAM2fastx tools

Conversion of PacBio BAM files into gzipped fasta and fastq files, including splitting of barcoded data


Availability

Latest version can be installed via bioconda package pbtk.

Please refer to our official pbbioconda page for information on Installation, Support, License, Copyright, and Disclaimer.

Usage

For tool information please see github.com/PacificBiosciences/pbtk#bam2fastx

DISCLAIMER

THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.

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Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.

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