C++ applications to generate high-quality, phased consensus sequences from pooled amplicons
Latest version can be installed via bioconda package pblaa.
Please refer to our official pbbioconda page for information on Installation, Support, License, Copyright, and Disclaimer.
laa takes a random subset of reads, filtered according to user-adjustable
parameters, and attempts to generated a high-quality phased consensus sequence
corresponding to each unique species of molecule present. More information available here.
laagc performs the same procedure as LAA, but utilizes a preliminary
"pre-clustering" step to group reads according to their similarity to a list
of user-supplied sequences, enabling faster, higher quality results from
more complex samples than regular Long Amplicon Analysis. More information available here.
Support is only provided for official and stable SMRT Analysis builds provided by PacBio and not for source builds.
THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.