Second install fails if install with pnpm and node-linker=hoisted

[DzmVasileusky]

parcel version:
2.0.4

pnpm version:
8.5.1

Code to reproduce the issue:
Clone this repo https://github.com/DzmVasileusky/pnpm-issue-1
run pnpm i
run pnpm i again
Expected behavior:
No errors

Actual behavior:

node_modules/@parcel/watcher: Running install script, failed in 1.7s
node_modules/@parcel/watcher install$ node-gyp-build
│ node:internal/modules/cjs/loader:1042
│   throw err;
│   ^
│ Error: Cannot find module '/Users/dzmvasilevsky/Work/TulaCo/crexi/node-gyp-build@4.6.0/node_modules/node-gyp-build/bin.js'
│     at Module._resolveFilename (node:internal/modules/cjs/loader:1039:15)
│     at Module._load (node:internal/modules/cjs/loader:885:27)
│     at Function.executeUserEntryPoint [as runMain] (node:internal/modules/run_main:81:12)
│     at node:internal/main/run_main_module:23:47 {
│   code: 'MODULE_NOT_FOUND',
│   requireStack: []
│ }
│ Node.js v18.13.0
└─ Failed in 1.7s at /Users/dzmvasilevsky/Work/TulaCo/crexi/pnpm-issue/node_modules/@parcel/watcher
 ELIFECYCLE  Command failed with exit code 1.

Additional information:
node -v prints: v16.15.0
Windows, macOS, or Linux?: MacOS

It seems dependencies resolution is happening in a wrong way. Parcel is trying to resolve node-gyp-build from a totally wrong directory.
node_modules are located here /Users/dzmvasilevsky/Work/TulaCo/crexi/web/node_modules while it is looking somewhere like ../../node-gyp-build@4.6.0/node_modules/node-gyp-build/bin.js while should look at ../node-gyp-build/bin.js. Probably parcel doesn't respect node-linker=hoisted which makes an npm like node_modules structure

[wangsijie]

same problem

[DzmVasileusky]

@wangsijie regarding parcel/watcher issue you can just add node-gyp-build to a package.json, that's a hack for sure but it is working

[khludenevav]

Same problem