Skip to content

Latest commit

 

History

History
60 lines (33 loc) · 3.27 KB

README.md

File metadata and controls

60 lines (33 loc) · 3.27 KB
Raw

Lateral inhibition in relaxation oscillators provides a basis for computation

This repository contains data for the manuscript:

Shamim AP, Menon SN and Sinha S (2022) Lateral inhibition in relaxation oscillators provides a basis for computation. arXiv :2208.09187

The folders contain program files used to generate the data displayed in the figures of the above manuscript, as well as associated .dat files.

Contents of folder time-series_array

These codes simulate the dynamics of an array (ring/chain) of N FHN oscillators, using random initial conditions. The code will output the complete time series without removing any transience.

Contents of folder steady-state_ensemble

These codes run an ensemble of simulations on an array (ring/chain) of N FHN oscillators, for different random initial conditions and saves the final u and v values in each case. The data is also binarized using the given thresholds in the paper.

Contents of folder unique_binary

These codes identify the unique binary strings in an array (ring/chain) of N=10 FHN oscillators, starting from the full set of data obtained using folder steady-state_ensemble.

Contents of folder check_stability

These codes checks the stability of each of the 1024 potential SPOD states in an array of N=10 oscillators. The results obtained here validate the findings in the folder unique_binary.

Contents of folder perturb_SPOD

These codes simulate the effect of pertubations of specified amplitude and duration to an initial specified SPOD state.

Contents of folder transition_matrix

These codes create a matrix that details the transitions between SPOD states that arise upon perturbations, in a ring/chain of oscillators.

Contents of folder compute_stability

These codes compute the probabilities of obtaining a given SPOD state, starting from random initial conditions (local stability measure), and that obtained upon perturbation (global stability measure). The data used to obtain the local and global stabilities are generated in folders unique_binary and perturb_SPOD, respectively.

Contents of folder data_files

  1. unique_binary_chain_10.dat: List of unique binary strings for a chain of length N=10.

  2. unique_binary_ring_perm_10.dat: List of unique binary strings for a ring of length N=10, under circular permutations.

  3. stimulation_sites_10.dat: List of 1024 stimulation protocols used for perturbing the SPOD states in an array of length N=10.

  4. StrxStr_chain_0.0008_50.dat: Matrix of size 68x68 containing the frequency of transitions between the SPOD states in a chain.

  5. StrxStr_ring_0.0008_50.dat: Matrix of size 14x14 containing the frequency of transitions between the SPOD states in a ring.

  6. StrxStr_transition_chain_0.0008_50.dat: Matrix of size 68x68 containing the transition probabilities between the SPOD states in a chain.

  7. StrxStr_transition_ring_0.0008_50.dat: Matrix of size 68x68 containing the transition probabilities between the SPOD states in a ring.