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cPath: old Pathway Commons portal engine
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PathwayCommons/cpath1
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CREATE CYTOSCAPE WEBSTART ------------------------- 0) Update cpath2.jar - in coreplugins/cPath2, update plugin.props, and make sure that the plugin is pointing to the correct URL. for example: cpath2.server_url=http://awabi.cbio.mskcc.org/pc/webservice.do - regenerate the jar: ant jar 1) Run cytoscape webstart ant task: - update build.xml and replace all storepass attributes with your storepass (see Ben for password) - update build.xml and replace all alias attributes with your alias (alias="cbio") - make sure code signing keystore file, .keystore is located in your home directory - type: "ant -DwebstartURL=http://yourdomain.com webstart" on commandline inside cytoscape dir example: ant -DwebstartURL=http://cerami.bscb.cornell.edu/ webstart example: ant -DwebstartURL=http://192.168.0.4/ webstart 2) Move signed cytoscape files into cpath tree: - move files in build/webstart to $CPATH_ROOT/web/jsp/cytoscape - restore the original cytoscape.props file in $CPATH_ROOT/web/jsp/cytoscape (if you just clobbered it), and modify as needed - verify that $CPATH_ROOT/src/org/mskcc/pathdb/servlet/CytoscapeJnlpServlet.java, writeJNLPData() references all required jars (this can be done by comparing servlet with $CPATH_ROOT/web/jsp/cytoscape/cy1.jnlp 3) Done!
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