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makefile
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#
# See https://petsc.org/release/install/ for instructions on installing PETSc
#
# This is the top level makefile for compiling PETSc.
# * make help - useful messages on functionality
# * make all - compile the PETSc libraries and utilities
# * make check - runs a quick test that the libraries are built correctly and PETSc applications can run
#
# * make install - for use with ./configure is run with the --prefix=directory option
# * make test - runs a comprehensive test suite (requires gnumake)
# * make docs - build the entire PETSc website of documentation (locally)
# * a variety of rules that print library properties useful for building applications (use make help)
# * a variety of rules for PETSc developers
#
# gmakefile - manages the compiling PETSc in parallel
# gmakefile.test - manages running the comprehensive test suite
#
# This makefile does not require GNUmake
ALL: all
# next line defines PETSC_DIR and PETSC_ARCH if they are not set
include ././${PETSC_ARCH}/lib/petsc/conf/petscvariables
include ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/petscrules
include ${PETSC_DIR}/lib/petsc/conf/rules_doc.mk
include ${PETSC_DIR}/lib/petsc/conf/rules_util.mk
# This makefile contains a lot of PHONY targets with improperly specified prerequisites
# where correct execution instead depends on the targets being processed in the correct
# order.
.NOTPARALLEL:
OMAKE_SELF = $(OMAKE) -f makefile
OMAKE_SELF_PRINTDIR = $(OMAKE_PRINTDIR) -f makefile
PETSCCONF_H = ${PETSC_DIR}/${PETSC_ARCH}/include/petscconf.h
#********* Rules for make all **********************************************************************************************************************************
all:
+@${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} chk_upgrade | tee ${PETSC_ARCH}/lib/petsc/conf/make.log
@ln -sf ${PETSC_ARCH}/lib/petsc/conf/make.log make.log
+@(${OMAKE_SELF_PRINTDIR} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} all-local; echo "$$?" > ${PETSC_ARCH}/lib/petsc/conf/error.log) 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log
+@if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then \
grep -E '(out of memory allocating.*after a total of|gfortran: fatal error: Killed signal terminated program f951|f95: fatal error: Killed signal terminated program f951)' ${PETSC_ARCH}/lib/petsc/conf/make.log | tee ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log > /dev/null; \
if test -s ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log; then \
printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Error during compile, you need to increase the memory allocated to the VM and rerun " 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
else \
printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Error during compile, check ${PETSC_ARCH}/lib/petsc/conf/make.log" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Send it and ${PETSC_ARCH}/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
if [ "X${CONDA_ACTIVE}" != "X" ]; then \
echo " Having Conda in your shell may have caused this problem, consider turning off Conda." 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
fi ; \
printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
fi \
else \
${OMAKE_SELF} print_mesg_after_build PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log ;\
fi #solaris make likes to print the whole command that gave error. So split this up into the smallest chunk below
@echo "Finishing make run at `date +'%a, %d %b %Y %H:%M:%S %z'`" >> ${PETSC_ARCH}/lib/petsc/conf/make.log
@if [ "`cat ${PETSC_ARCH}/lib/petsc/conf/error.log 2> /dev/null`" != "0" ]; then exit 1; fi
all-local: info libs matlabbin petsc4py-build libmesh-build mfem-build slepc-build hpddm-build amrex-build bamg-build
${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files:
@touch -t 197102020000 ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/files
${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles:
@${MKDIR} -p ${PETSC_DIR}/${PETSC_ARCH}/tests && touch -t 197102020000 ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles
chk_upgrade:
-@PETSC_DIR=${PETSC_DIR} ${PYTHON} ${PETSC_DIR}/lib/petsc/bin/petscnagupgrade.py
matlabbin:
-@if [ "${MATLAB_MEX}" != "" -a "${MATLAB_SOCKET}" != "" -a "${PETSC_SCALAR}" = "real" -a "${PETSC_PRECISION}" = "double" ]; then \
echo "BEGINNING TO COMPILE MATLAB INTERFACE"; \
if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc; fi; \
if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab; fi; \
cd src/sys/classes/viewer/impls/socket/mex-scripts && ${OMAKE_SELF} mex-scripts PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR}; \
echo "========================================="; \
fi
allfortranstubs: deletefortranstubs
@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py --petsc-dir=${PETSC_DIR} --petsc-arch=${PETSC_ARCH} --bfort=${BFORT} --mode=generate --verbose=${V}
-@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py --petsc-dir=${PETSC_DIR} --petsc-arch=${PETSC_ARCH} --mode=merge --verbose=${V}
#copy of allfortranstubs with PETSC_ARCH=''
allfortranstubsinplace: deletefortranstubs
@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py --petsc-dir=${PETSC_DIR} --petsc-arch='' --bfort=${BFORT} --mode=generate --verbose=${V}
-@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py --petsc-dir=${PETSC_DIR} --petsc-arch='' --mode=merge --verbose=${V}
deleteshared:
@for LIBNAME in ${SHLIBS}; \
do \
if [ -d ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM ]; then \
echo ${RM} -rf ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM; \
${RM} -rf ${INSTALL_LIB_DIR}/$${LIBNAME}.dylib.dSYM; \
fi; \
echo ${RM} ${INSTALL_LIB_DIR}/$${LIBNAME}.${SL_LINKER_SUFFIX}; \
${RM} ${INSTALL_LIB_DIR}/$${LIBNAME}.${SL_LINKER_SUFFIX}; \
done
@if [ -f ${INSTALL_LIB_DIR}/so_locations ]; then \
echo ${RM} ${INSTALL_LIB_DIR}/so_locations; \
${RM} ${INSTALL_LIB_DIR}/so_locations; \
fi
deletefortranstubs:
-@find src -type d -name ftn-auto* | xargs rm -rf
-@if [ -n "${PETSC_ARCH}" ] && [ -d ${PETSC_ARCH} ] && [ -d ${PETSC_ARCH}/src ]; then \
find ${PETSC_ARCH}/src -type d -name ftn-auto* | xargs rm -rf ;\
fi
reconfigure: allclean
@unset MAKEFLAGS && ${PYTHON} ${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py
chkopts:
-@echo "Warning: chkopts target is deprecated and can be removed from user makefiles"
gnumake:
+@echo "make gnumake is deprecated, use make libs"
+@make libs
# ******** Rules for make check ****************************************************************************************************************************
RUN_TEST = ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff
check_install: check
check:
-@echo "Running PETSc check examples to verify correct installation"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
@if [ "${PETSC_WITH_BATCH}" != "" ]; then \
echo "Running with batch filesystem, cannot run make check"; \
elif [ "${MPIEXEC}" = "/bin/false" ]; then \
echo "*mpiexec not found*. cannot run make check"; \
else \
${RM} -f check_error;\
${RUN_TEST} OMP_NUM_THREADS=1 PETSC_OPTIONS="${PETSC_OPTIONS} ${PETSC_TEST_OPTIONS}" PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" check_build 2>&1 | tee ./${PETSC_ARCH}/lib/petsc/conf/check.log; \
if [ -f check_error ]; then \
echo "Error while running make check"; \
${RM} -f check_error;\
exit 1; \
fi; \
${RM} -f check_error;\
fi;
check_build:
+@cd src/snes/tutorials >/dev/null; ${RUN_TEST} clean-legacy
+@cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19
+@if [ ! "${MPI_IS_MPIUNI}" ]; then cd src/snes/tutorials >/dev/null; ${RUN_TEST} testex19_mpi; fi
+@if [ "`grep -E '^#define PETSC_HAVE_HYPRE 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_HYPRE 1" ] && [ "${PETSC_SCALAR}" = "real" ]; then \
if [ "`grep -E '^#define PETSC_HAVE_CUDA 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_CUDA 1" ]; then HYPRE_TEST=runex19_hypre_cuda; \
elif [ "`grep -E '^#define PETSC_HAVE_HIP 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_HIP 1" ]; then HYPRE_TEST=runex19_hypre_hip; \
else HYPRE_TEST=runex19_hypre; fi; \
cd src/snes/tutorials >/dev/null; ${RUN_TEST} $${HYPRE_TEST}; \
fi;
+@if [ "`grep -E '^#define PETSC_HAVE_CUDA 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_CUDA 1" ]; then \
cd src/snes/tutorials >/dev/null; ${RUN_TEST} runex19_cuda; \
fi;
+@if [ "${MPI_IS_MPIUNI}" = "" ]; then \
cd src/snes/tutorials >/dev/null; \
if [ "`grep -E '^#define PETSC_HAVE_KOKKOS_KERNELS 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_KOKKOS_KERNELS 1" ] && [ "${PETSC_SCALAR}" = "real" ] && [ "${PETSC_PRECISION}" = "double" ]; then \
${RUN_TEST} runex3k_kokkos; \
fi;\
if [ "`grep -E '^#define PETSC_HAVE_MUMPS 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_MUMPS 1" ]; then \
${RUN_TEST} runex19_fieldsplit_mumps; \
fi;\
if [ "`grep -E '^#define PETSC_HAVE_SUITESPARSE 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_SUITESPARSE 1" ]; then \
${RUN_TEST} runex19_suitesparse; \
fi;\
if [ "`grep -E '^#define PETSC_HAVE_SUPERLU_DIST 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_SUPERLU_DIST 1" ]; then \
${RUN_TEST} runex19_superlu_dist; \
fi;\
if [ "`grep -E '^#define PETSC_HAVE_ML 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_ML 1" ] || [ "`grep -E '^#define PETSC_HAVE_TRILINOS 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_TRILINOS 1" ]; then \
${RUN_TEST} runex19_ml; \
fi; \
${RUN_TEST} clean-legacy; \
cd - > /dev/null; \
if [ "`grep -E '^#define PETSC_HAVE_AMREX 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_AMREX 1" ] && [ "`grep -E '^#define PETSC_HAVE_CUDA 1' ${PETSCCONF_H}`" != "#define PETSC_HAVE_CUDA 1" ]; then \
echo "Running amrex test example to verify correct installation";\
echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}";\
cd src/ksp/ksp/tutorials/amrex >/dev/null;\
${RUN_TEST} clean-legacy; \
${RUN_TEST} testamrex; \
${RUN_TEST} clean-legacy; \
cd - > /dev/null; \
fi;\
fi;
+@if [ "`grep -E '^#define PETSC_HAVE_HDF5 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_HDF5 1" ]; then \
cd src/vec/vec/tests >/dev/null;\
${RUN_TEST} clean-legacy; \
${RUN_TEST} runex47; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "${MPI4PY}" = "yes" ]; then \
cd src/sys/tests >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex55; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "${PETSC4PY}" = "yes" ]; then \
cd src/ksp/ksp/tutorials >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex100; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "`grep -E '^#define PETSC_USE_FORTRAN_BINDINGS 1' ${PETSCCONF_H}`" = "#define PETSC_USE_FORTRAN_BINDINGS 1" ]; then \
cd src/snes/tutorials >/dev/null; \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex5f; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "`grep -E '^#define PETSC_HAVE_MATLAB 1' ${PETSCCONF_H}`" = "#define PETSC_HAVE_MATLAB 1" ]; then \
${RUN_TEST} clean-legacy; \
${RUN_TEST} testex31; \
${RUN_TEST} clean-legacy; \
fi;
+@if [ "${SLEPC}" = "yes" ]; then \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} slepc-check; \
fi;
+@if [ "${MFEM}" = "yes" ]; then \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} mfem-check; \
fi;
-@echo "Completed PETSc check examples"
# ********* Rules for make install *******************************************************************************************************************
install:
@${PYTHON} ./config/install.py -destDir=${DESTDIR}
+${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=$@ install-builtafterpetsc
# A smaller install with fewer extras
install-lib:
@${PYTHON} ./config/install.py -destDir=${DESTDIR} -no-examples
+${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=$@ install-builtafterpetsc
install-builtafterpetsc:
+${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} PETSC_INSTALL=${PETSC_INSTALL} petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install
# Creates ${HOME}/petsc.tar.gz [and petsc-with-docs.tar.gz]
dist:
${PETSC_DIR}/lib/petsc/bin/maint/builddist ${PETSC_DIR} main
# ******** Rules for running the full test suite ********************************************************************************************************
TESTMODE = testexamples
ALLTESTS_CHECK_FAILURES = no
ALLTESTS_MAKEFILE = ${PETSC_DIR}/gmakefile.test
VALGRIND=0
alltests: chk_in_petscdir ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles
-@${RM} -rf ${PETSC_ARCH}/lib/petsc/conf/alltests.log alltests.log
+@if [ -f ${PETSC_DIR}/share/petsc/examples/gmakefile.test ] ; then \
ALLTESTS_MAKEFILE=${PETSC_DIR}/share/petsc/examples/gmakefile.test ; \
ALLTESTSLOG=alltests.log ;\
else \
ALLTESTS_MAKEFILE=${PETSC_DIR}/gmakefile.test; \
ALLTESTSLOG=${PETSC_ARCH}/lib/petsc/conf/alltests.log ;\
ln -s $${ALLTESTSLOG} alltests.log ;\
fi; \
${OMAKE} allgtest ALLTESTS_MAKEFILE=$${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} MPIEXEC="${MPIEXEC}" DATAFILESPATH=${DATAFILESPATH} VALGRIND=${VALGRIND} 2>&1 | tee $${ALLTESTSLOG};\
if [ x${ALLTESTS_CHECK_FAILURES} = xyes -a ${PETSC_PRECISION} != single ]; then \
cat $${ALLTESTSLOG} | grep -E '(^not ok|not remade because of errors|^# No tests run)' | wc -l | grep '^[ ]*0$$' > /dev/null; \
fi;
allgtests-tap: allgtest-tap
+@${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} check-test-errors
allgtest-tap: ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles
+@MAKEFLAGS="-j$(MAKE_TEST_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)" ${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test OUTPUT=1
allgtest: ${PETSC_DIR}/${PETSC_ARCH}/tests/testfiles
+@MAKEFLAGS="-j$(MAKE_TEST_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)" ${OMAKE} -k -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test V=0 2>&1 | grep -E -v '^(ok [^#]*(# SKIP|# TODO|$$)|[A-Za-z][A-Za-z0-9_]*\.(c|F|cxx|F90).$$)'
test:
+${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} test
cleantest:
+${OMAKE} -f ${ALLTESTS_MAKEFILE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} cleantest
#********* Rules for cleaning ***************************************************************************************************************************
deletelibs:
-${RM} -rf ${PETSC_LIB_DIR}/libpetsc*.*
deletemods:
-${RM} -f ${PETSC_DIR}/${PETSC_ARCH}/include/petsc*.mod
allclean:
-@${OMAKE} -f gmakefile clean
clean:: allclean
distclean:
@if [ -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ]; then \
echo "*** Preserving ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py in ${PETSC_DIR} ***"; \
mv -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ${PETSC_DIR}/; \
echo "*** Deleting all build files in ${PETSC_DIR}/${PETSC_ARCH} ***"; \
${RM} -rf ${PETSC_DIR}/${PETSC_ARCH}/ ; \
else \
echo "*** Build files in PETSC_ARCH=${PETSC_ARCH} not found. Skipping delete! ***"; \
fi
info:
+@${OMAKE} -f gmakefile gmakeinfo
check_usermakefile:
-@echo "Testing compile with user makefile"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
@cd src/snes/tutorials; ${RUN_TEST} clean-legacy
@cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex19
@grep -E "^#define PETSC_USE_FORTRAN_BINDINGS 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex5f; \
fi; ${RM} .ftn.log;
@cd src/snes/tutorials; ${RUN_TEST} clean-legacy
-@echo "Completed compile with user makefile"
#********* Rules for running clangformat ************************************************************************************************************
checkgitclean:
@if ! git diff --quiet; then \
echo "The repository has uncommitted files, cannot run checkclangformat" ;\
git status -s --untracked-files=no ;\
false;\
fi;
# Check that all the source code in the repository satisfies the .clang_format
checkclangformat: checkclangformatversion checkgitclean clangformat
@if ! git diff --quiet; then \
printf "The current commit has source code formatting problems\n" ;\
if [ -z "${CI_PIPELINE_ID}" ]; then \
printf "Please run 'git diff' to check\n"; \
git diff --stat; \
else \
git diff --patch-with-stat > ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch; \
git diff --patch-with-stat --color=always | head -1000; \
if [ `wc -l < ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch` -gt 1000 ]; then \
printf "The diff has been trimmed, check ${PETSC_ARCH}/lib/petsc/conf/checkclangformat.patch (in CI artifacts) for all changes\n"; \
fi;\
fi;\
false;\
fi;
# Compare ABI/API of two versions of PETSc library with the old one defined by PETSC_{DIR,ARCH}_ABI_OLD
abitest:
@if [ "${PETSC_DIR_ABI_OLD}" = "" ] || [ "${PETSC_ARCH_ABI_OLD}" = "" ]; \
then printf "You must set environment variables PETSC_DIR_ABI_OLD and PETSC_ARCH_ABI_OLD to run abitest\n"; \
exit 1; \
fi;
-@echo "Comparing ABI/API of the following two PETSc versions (you must have already configured and built them using GCC and with -g):"
-@echo "========================================================================================="
-@echo " Old: PETSC_DIR_ABI_OLD = ${PETSC_DIR_ABI_OLD}"
-@echo " PETSC_ARCH_ABI_OLD = ${PETSC_ARCH_ABI_OLD}"
-@pushd ${PETSC_DIR_ABI_OLD} >> /dev/null ; echo " Branch = "`git rev-parse --abbrev-ref HEAD`
-@echo " New: PETSC_DIR = ${PETSC_DIR}"
-@echo " PETSC_ARCH = ${PETSC_ARCH}"
-@echo " Branch = "`git rev-parse --abbrev-ref HEAD`
-@echo "========================================================================================="
-@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/abicheck.py -old_dir ${PETSC_DIR_ABI_OLD} -old_arch ${PETSC_ARCH_ABI_OLD} -new_dir ${PETSC_DIR} -new_arch ${PETSC_ARCH} -report_format html
# Compare ABI/API of current PETSC_ARCH/PETSC_DIR with a previous branch
abitestcomplete:
-@if [[ -f "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log" ]]; then \
OPTIONS=`grep -h -m 1 "Configure Options: " ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log | sed "s!Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions!!g"` ;\
echo $${OPTIONS} ;\
fi ; \
if [[ "${PETSC_DIR_ABI_OLD}" != "" ]]; then \
PETSC_DIR_OLD=${PETSC_DIR_ABI_OLD}; \
else \
PETSC_DIR_OLD=${PETSC_DIR}/../petsc-abi; \
fi ; \
echo "=================================================================================================" ;\
echo "Doing ABI/API comparison between" ${branch} " and " `git rev-parse --abbrev-ref HEAD` "using " $${OPTIONS} ;\
echo "=================================================================================================" ;\
if [[ ! -d $${PETSC_DIR_OLD} ]]; then \
git clone ${PETSC_DIR} $${PETSC_DIR_OLD} ; \
else \
cd $${PETSC_DIR_OLD} ; \
git pull ; \
fi ; \
cd $${PETSC_DIR_OLD} ; \
git checkout ${branch} ; \
PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` ./configure $${OPTIONS} ; \
PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` make all test ; \
cd ${PETSC_DIR} ; \
./configure $${OPTIONS}; \
make all test ; \
PETSC_DIR_ABI_OLD=$${PETSC_DIR_OLD} PETSC_ARCH_ABI_OLD=arch-branch-`git rev-parse ${branch}` make abitest
# ******** Rules for running Streams benchmark ****************************************************************************************************
mpistreams:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistreams
mpistream:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistream
openmpstreams:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstreams
openmpstream:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstream
stream: mpistream
streams: mpistreams
# ******** Rules for generating tag files for Emacs/VIM *******************************************************************************************
alletags:
-@${PYTHON} lib/petsc/bin/maint/generateetags.py
-@find config -type f -name "*.py" |grep -v SCCS | xargs etags -o TAGS_PYTHON
# obtain gtags from https://www.gnu.org/software/global/
allgtags:
-@find ${PETSC_DIR}/include ${PETSC_DIR}/src -regex '\(.*makefile\|.*\.\(cc\|hh\|cpp\|cxx\|C\|hpp\|c\|h\|cu\|m\)$$\)' | grep -v ftn-auto | gtags -f -
# ********* Rules for building "classic" documentation; uses rules also in lib/petsc/conf/rules_doc.mk **************************************************
docs:
cd doc; time ${OMAKE_SELF} sphinxhtml
chk_in_petscdir:
@if [ ! -f include/petscversion.h ]; then \
printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR **********************************************\n" ; \
echo " This target should be invoked in top level PETSc source dir!"; \
printf "****************************************************************************"${PETSC_TEXT_NORMAL}"\n" ; false; fi
chk_loc:
@if [ ${LOC}foo = foo ] ; then \
printf ${PETSC_TEXT_HILIGHT}"*********************** ERROR **********************************************\n" ; \
echo " Please specify LOC variable for eg: make allmanpages LOC=/sandbox/petsc "; \
printf "****************************************************************************"${PETSC_TEXT_NORMAL}"\n" ; false; fi
@${MKDIR} ${LOC}/manualpages
alldocclean: deletemanualpages allcleanhtml
# Deletes man pages (.md version)
deletemanualpages: chk_loc
-@if [ -d ${LOC} -a -d ${LOC}/manualpages ]; then \
find ${LOC}/manualpages -type f -name "*.md" -exec ${RM} {} \; ;\
${RM} ${LOC}/manualpages/manualpages.cit ;\
fi
allcleanhtml:
-${OMAKE_SELF} ACTION=cleanhtml PETSC_DIR=${PETSC_DIR} tree
# ********* Rules for checking code coverage *********************************************************************************************
gcov:
output_file_base_name=${PETSC_ARCH}-gcovr-report.json; \
petsc_arch_dir=${PETSC_DIR}/${PETSC_ARCH}; \
tar_file=$${petsc_arch_dir}/$${output_file_base_name}.tar.bz2; \
cd $${petsc_arch_dir} && \
gcovr --json --output $${petsc_arch_dir}/$${output_file_base_name} --exclude '.*/ftn-auto/.*' --exclude-lines-by-pattern '^\s*SETERR.*' --exclude-throw-branches --exclude-unreachable-branches -j 4 --gcov-executable "${PETSC_COVERAGE_EXEC}" --root ${PETSC_DIR} ./obj ./tests ${PETSC_GCOV_OPTIONS} && \
${RM} -f $${tar_file} && \
tar --bzip2 -cf $${tar_file} -C $${petsc_arch_dir} ./$${output_file_base_name} && \
${RM} $${petsc_arch_dir}/$${output_file_base_name}
mergegcov:
$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/gcov.py --merge-branch `lib/petsc/bin/maint/check-merge-branch.sh` --html --xml ${PETSC_GCOV_OPTIONS}
countfortranfunctions:
-@cd ${PETSC_DIR}/src/fortran; grep -E '^void' custom/*.c auto/*.c | \
cut -d'(' -f1 | tr -s ' ' | cut -d' ' -f2 | uniq | grep -E -v "(^$$|Petsc)" | \
sed "s/_$$//" | sort > /tmp/countfortranfunctions
countcfunctions:
-@grep PETSC_EXTERN ${PETSC_DIR}/include/*.h | grep "(" | tr -s ' ' | \
cut -d'(' -f1 | cut -d' ' -f3 | grep -v "\*" | tr -s '\012' | \
tr 'A-Z' 'a-z' | sort | uniq > /tmp/countcfunctions
difffortranfunctions: countfortranfunctions countcfunctions
-@echo -------------- Functions missing in the fortran interface ---------------------
-@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^<" | cut -d' ' -f2
-@echo ----------------- Functions missing in the C interface ------------------------
-@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^>" | cut -d' ' -f2
-@${RM} /tmp/countcfunctions /tmp/countfortranfunctions
checkbadfortranstubs:
-@echo "========================================="
-@echo "Functions with MPI_Comm as an Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'MPI_Comm' | \
tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3
-@echo "========================================="
-@echo "Functions with a String as an Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'char \*' | \
tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3
-@echo "========================================="
-@echo "Functions with Pointers to PETSc Objects as Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; \
_p_OBJ=`grep _p_ ${PETSC_DIR}/include/*.h | tr -s ' ' | \
cut -d' ' -f 3 | tr -s '\012' | grep -v '{' | cut -d'*' -f1 | \
sed "s/_p_//g" | tr -s '\012 ' ' *|' ` ; \
for OBJ in $$_p_OBJ; do \
grep "$$OBJ \*" *.c | tr -s ' ' | tr -s ':' ' ' | \
cut -d'(' -f1 | cut -d' ' -f1,3; \
done
checkpackagetests:
-@echo "Missing package tests"
-@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`ls *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(with-$${j}|download-$${j})" configexamples | grep -v "=0" | wc -l ; done
-@echo "Missing download package tests"
-@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`grep -l "download " *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; grep -E "(download-$${j})" configexamples | grep -v "=0" | wc -l ; done
check_petsc4py_rst:
@${RM} -f petsc4py_rst.log
@echo "Checking src/binding/petsc4py/DESCRIPTION.rst"
@rst2html src/binding/petsc4py/DESCRIPTION.rst > /dev/null 2> petsc4py_rst.log
@if test -s petsc4py_rst.log; then cat petsc4py_rst.log; exit 1; fi
# TODO: checkTestCoverage: that makes sure every tutorial test has at least one test listed in the file, perhaps handled by gmakegentest.py
# TODO: check for PetscBeginFunctionUser in non-example source
# TODO: check for __ at start of #define or symbol
# TODO: checking for missing manual pages
# TODO: check for incorrect %d
# TODO: check for double blank lines
# TODO: check for ill-formed manual pages
# TODO: check for { on line after for
# TODO: check for } then else on following line
# TODO: check for } else { with SETERRQ on following line or if () { with SETERRQ on following line
checkbadSpelling:
-@x=`python3 ../bin/extract.py | aspell list | sort -u` ;
updatedatafiles:
-@if [ -d "${HOME}/datafiles" ]; then \
echo " ** Updating datafiles at ${HOME}/datafiles **"; \
cd "${HOME}/datafiles" && git pull -q; fi
.PHONY: info info_h all deletelibs allclean update \
alletags etags etags_complete etags_noexamples etags_makefiles etags_examples etags_fexamples alldoc allmanpages \
allcleanhtml countfortranfunctions \
start_configure configure_petsc configure_clean matlabbin install