-
Notifications
You must be signed in to change notification settings - Fork 5
/
searchindex.js
1 lines (1 loc) · 183 KB
/
searchindex.js
1
Search.setIndex({"docnames": ["approx_infer/approx_infer", "approx_infer/base", "approx_infer/bn_sampling", "approx_infer/gibbs", "base", "base/base", "detailed_notebooks/1. Introduction to Probabilistic Graphical Models", "detailed_notebooks/10. Learning Bayesian Networks from Data", "detailed_notebooks/11. A Bayesian Network to model the influence of energy consumption on greenhouse gases in Italy", "detailed_notebooks/2. Bayesian Networks", "detailed_notebooks/3. Causal Bayesian Networks", "detailed_notebooks/4. Markov Models", "detailed_notebooks/5. Exact Inference in Graphical Models", "detailed_notebooks/6. Approximate Inference in Graphical Models", "detailed_notebooks/7. Parameterizing with Continuous Variables", "detailed_notebooks/8. Sampling Algorithms", "detailed_notebooks/9. Reading and Writing from pgmpy file formats", "detailed_notebooks/markdown-cells", "exact_infer/base", "exact_infer/bp", "exact_infer/bp_wmp", "exact_infer/causal", "exact_infer/dbn_infer", "exact_infer/model_testing", "exact_infer/mplp", "exact_infer/ve", "examples", "examples/Basic Operations on Bayesian Network", "examples/Causal Games", "examples/Causal Inference", "examples/Creating a Discrete Bayesian Network", "examples/Extending pgmpy", "examples/Gaussian Bayesian Networks (GBNs)", "examples/Inference in Discrete Bayesian Networks", "examples/Learning Parameters in Discrete Bayesian Networks", "examples/Learning Parameters in Discrete Factor Graphs", "examples/Linear Gaussian Bayesian Network", "examples/Monty Hall Problem", "examples/Simulating Data", "examples/Structure Learning in Bayesian Networks", "examples/Structure Learning with Chow-Liu", "examples/Structure Learning with TAN", "factors/base", "factors/discrete", "factors/discretize", "index", "metrics/metrics", "models/base", "models/bayesiannetwork", "models/clustergraph", "models/dbn", "models/factorgraph", "models/junctiontree", "models/markovchain", "models/markovnetwork", "models/naive", "models/noisyor", "models/sem", "param_estimator/base", "param_estimator/bayesian_est", "param_estimator/em", "param_estimator/mle", "param_estimator/sem_estimator", "plotting", "readwrite/base", "readwrite/bif", "readwrite/pomdpx", "readwrite/uai", "readwrite/xmlbelief", "readwrite/xmlbif", "started/base", "started/contributing", "started/getting_started", "started/install", "started/license", "structure_estimator/base", "structure_estimator/exhaustive", "structure_estimator/hill", "structure_estimator/mmhc", "structure_estimator/pc", "structure_estimator/tree", "tutorial"], "filenames": ["approx_infer/approx_infer.rst", "approx_infer/base.rst", "approx_infer/bn_sampling.rst", "approx_infer/gibbs.rst", "base.rst", "base/base.rst", "detailed_notebooks/1. Introduction to Probabilistic Graphical Models.ipynb", "detailed_notebooks/10. Learning Bayesian Networks from Data.ipynb", "detailed_notebooks/11. A Bayesian Network to model the influence of energy consumption on greenhouse gases in Italy.ipynb", "detailed_notebooks/2. Bayesian Networks.ipynb", "detailed_notebooks/3. Causal Bayesian Networks.ipynb", "detailed_notebooks/4. Markov Models.ipynb", "detailed_notebooks/5. Exact Inference in Graphical Models.ipynb", "detailed_notebooks/6. Approximate Inference in Graphical Models.ipynb", "detailed_notebooks/7. Parameterizing with Continuous Variables.ipynb", "detailed_notebooks/8. Sampling Algorithms.ipynb", "detailed_notebooks/9. Reading and Writing from pgmpy file formats.ipynb", "detailed_notebooks/markdown-cells.ipynb", "exact_infer/base.rst", "exact_infer/bp.rst", "exact_infer/bp_wmp.rst", "exact_infer/causal.rst", "exact_infer/dbn_infer.rst", "exact_infer/model_testing.rst", "exact_infer/mplp.rst", "exact_infer/ve.rst", "examples.rst", "examples/Basic Operations on Bayesian Network.ipynb", "examples/Causal Games.ipynb", "examples/Causal Inference.ipynb", "examples/Creating a Discrete Bayesian Network.ipynb", "examples/Extending pgmpy.ipynb", "examples/Gaussian Bayesian Networks (GBNs).ipynb", "examples/Inference in Discrete Bayesian Networks.ipynb", "examples/Learning Parameters in Discrete Bayesian Networks.ipynb", "examples/Learning Parameters in Discrete Factor Graphs.ipynb", "examples/Linear Gaussian Bayesian Network.ipynb", "examples/Monty Hall Problem.ipynb", "examples/Simulating Data.ipynb", "examples/Structure Learning in Bayesian Networks.ipynb", "examples/Structure Learning with Chow-Liu.ipynb", "examples/Structure Learning with TAN.ipynb", "factors/base.rst", "factors/discrete.rst", "factors/discretize.rst", "index.rst", "metrics/metrics.rst", "models/base.rst", "models/bayesiannetwork.rst", "models/clustergraph.rst", "models/dbn.rst", "models/factorgraph.rst", "models/junctiontree.rst", "models/markovchain.rst", "models/markovnetwork.rst", "models/naive.rst", "models/noisyor.rst", "models/sem.rst", "param_estimator/base.rst", "param_estimator/bayesian_est.rst", "param_estimator/em.rst", "param_estimator/mle.rst", "param_estimator/sem_estimator.rst", "plotting.rst", "readwrite/base.rst", "readwrite/bif.rst", "readwrite/pomdpx.rst", "readwrite/uai.rst", "readwrite/xmlbelief.rst", "readwrite/xmlbif.rst", "started/base.rst", "started/contributing.rst", "started/getting_started.rst", "started/install.rst", "started/license.rst", "structure_estimator/base.rst", "structure_estimator/exhaustive.rst", "structure_estimator/hill.rst", "structure_estimator/mmhc.rst", "structure_estimator/pc.rst", "structure_estimator/tree.rst", "tutorial.rst"], "titles": ["Approximate Inference Using Sampling", "Approximate Inference", "Bayesian Model Sampling", "Gibbs Sampling", "Base Structure Classes", "Base Model Structures", "Introduction to Probabilitic Graphical Models", "Learning Bayesian Networks from Data", "A Bayesian Network to model the influence of energy consumption on greenhouse gases in Italy", "Bayesian Network", "Causal Bayesian Networks", "Markov Networks", "Exact Inference in Graphical Models", "Approximate Inference in Graphical Models", "Parameterizing with Continuous Variables", "Sampling In Continuous Graphical Models", "Reading and Writing from pgmpy file formats", "Markdown Cells", "Exact Inference", "Belief Propagation", "Belief Propagation with Message Passing", "Causal Inference", "Dynamic Bayesian Network Inference", "Model Testing", "MPLP", "Variable Elimination", "Example Notebooks", "Basic Operations on Bayesian Networks", "Causal Games", "Causal Inference Examples", "Creating Discrete Bayesian Networks", "Extending pgmpy", "Linear Gaussian Bayesian Networks (GBNs)", "Inference in Discrete Bayesian Network", "Parameter Learning in Discrete Bayesian Networks", "Marginal Learning in Discrete Markov Networks", "<no title>", "Monty Hall Problem", "Simulating Data From Bayesian Networks", "Structure Learning in Bayesian Networks", "Learning Tree Structure from Data using the Chow-Liu Algorithm", "Learning Tree-augmented Naive Bayes (TAN) Structure from Data", "Parameterization", "Discrete", "Discretizing Methods", "Supported Data Types", "Metrics for testing models", "Models", "Bayesian Network", "Cluster Graph", "Dynamic Bayesian Network (DBN)", "Factor Graph", "Junction Tree", "Markov Chain", "Markov Network", "Naive Bayes", "NoisyOr Model", "Structural Equation Models (SEM)", "Parameter Estimation", "Bayesian Estimator", "Expectation Maximization (EM)", "Maximum Likelihood Estimator", "Structural Equation Model Estimators", "Plotting Models", "Reading/Writing to File", "BIF (Bayesian Interchange Format)", "PomdpX", "UAI", "XMLBeliefNetwork", "XMLBIF", "Getting Started", "Contributing to pgmpy", "<no title>", "Installation", "License", "Structure Learning", "Exhaustive Search", "Hill Climb Search", "Mmhc Estimator", "PC (Constraint-Based Estimator)", "Tree Search", "Tutorial Notebooks"], "terms": {"class": [0, 2, 3, 5, 6, 7, 8, 9, 10, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 31, 41, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 71, 76, 77, 78, 79, 80], "pgmpy": [0, 2, 3, 4, 5, 7, 8, 9, 10, 14, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 43, 44, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 63, 65, 66, 67, 68, 69, 70, 73, 74, 76, 77, 78, 79, 80], "approxinfer": 0, "model": [0, 1, 3, 4, 7, 10, 14, 16, 19, 20, 21, 22, 24, 25, 28, 31, 37, 38, 40, 41, 43, 44, 45, 48, 49, 50, 51, 52, 53, 54, 55, 58, 59, 60, 61, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "sourc": [0, 2, 3, 4, 5, 8, 10, 19, 20, 21, 22, 23, 24, 25, 28, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "initi": [0, 3, 4, 5, 14, 15, 24, 35, 43, 48, 49, 50, 51, 52, 53, 54, 57, 60, 62, 65, 66, 67, 68], "paramet": [0, 2, 3, 4, 5, 6, 9, 14, 15, 19, 20, 21, 22, 23, 24, 25, 31, 32, 35, 43, 44, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "instanc": [0, 2, 4, 5, 8, 15, 16, 21, 23, 25, 43, 46, 48, 50, 55, 57, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79], "bayesiannetwork": [0, 2, 3, 7, 16, 19, 21, 23, 25, 27, 28, 29, 30, 34, 37, 38, 40, 41, 43, 46, 48, 59, 60, 61, 63, 65, 68, 69, 77, 78], "dynamicbayesiannetwork": [0, 22, 50], "exampl": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 31, 33, 34, 35, 38, 39, 40, 41, 43, 44, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 63, 65, 66, 67, 68, 69, 71, 76, 77, 78, 79, 80], "from": [0, 2, 3, 4, 5, 8, 10, 11, 12, 14, 15, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 36, 37, 39, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 63, 65, 67, 68, 69, 71, 73, 74, 76, 77, 78, 79, 80], "util": [0, 4, 5, 21, 23, 27, 30, 33, 34, 38, 39, 43, 46, 48, 50, 63, 65, 67, 68, 69, 79], "import": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 63, 65, 67, 68, 69, 76, 77, 78, 79, 80], "get_example_model": [0, 4, 5, 21, 23, 27, 30, 33, 34, 38, 39, 43, 46, 48, 50, 63, 65, 67, 68, 69, 79], "alarm": [0, 4, 5, 21, 23, 34, 38, 39, 43, 46, 48, 50, 79], "get_distribut": [0, 38, 68], "variabl": [0, 2, 3, 4, 5, 6, 7, 8, 15, 16, 18, 19, 20, 21, 22, 23, 24, 27, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 41, 43, 44, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 71, 76, 77, 78, 79, 80], "state_nam": [0, 9, 29, 35, 38, 43, 48, 60, 61, 76, 77, 78], "none": [0, 2, 3, 4, 5, 8, 14, 15, 19, 20, 21, 22, 23, 25, 38, 39, 43, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "joint": [0, 2, 6, 7, 8, 11, 12, 15, 19, 21, 25, 33, 35, 38, 48, 57], "true": [0, 2, 4, 5, 6, 7, 8, 9, 10, 15, 16, 17, 19, 20, 21, 23, 24, 25, 27, 28, 30, 34, 37, 38, 39, 40, 41, 43, 46, 48, 49, 50, 52, 53, 54, 59, 60, 61, 65, 66, 68, 69, 76, 77, 79, 80], "comput": [0, 2, 3, 4, 5, 6, 7, 8, 9, 12, 15, 17, 19, 20, 21, 22, 23, 25, 33, 38, 43, 46, 48, 50, 51, 53, 54, 55, 57, 59, 60, 61, 62, 76, 77, 79, 80], "distribut": [0, 2, 6, 7, 8, 11, 12, 16, 19, 20, 21, 24, 25, 30, 38, 44, 46, 48, 51, 53, 68, 74, 80], "given": [0, 2, 4, 5, 6, 7, 8, 9, 12, 14, 15, 16, 20, 21, 23, 24, 25, 27, 33, 34, 35, 37, 43, 44, 46, 48, 49, 50, 51, 53, 54, 55, 57, 59, 60, 61, 62, 76, 77, 78, 79, 80], "data": [0, 4, 5, 14, 16, 17, 21, 23, 44, 46, 48, 49, 50, 51, 52, 54, 55, 59, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "panda": [0, 2, 3, 7, 8, 10, 15, 21, 23, 25, 32, 35, 45, 46, 48, 50, 53, 55, 59, 60, 61, 62, 73, 76, 77, 78, 79, 80], "datafram": [0, 2, 3, 7, 8, 15, 21, 23, 25, 32, 35, 38, 46, 48, 50, 53, 55, 57, 59, 60, 61, 62, 76, 77, 78, 79, 80], "A": [0, 2, 3, 4, 5, 6, 7, 9, 10, 14, 15, 16, 17, 19, 20, 21, 23, 24, 25, 28, 31, 38, 40, 41, 43, 44, 46, 48, 49, 50, 51, 54, 55, 57, 59, 60, 61, 62, 65, 66, 67, 74, 76, 77, 78, 79, 80], "gener": [0, 2, 3, 4, 5, 7, 8, 9, 15, 17, 21, 35, 38, 43, 48, 50, 53, 56, 57, 60, 62, 76, 79], "list": [0, 2, 3, 4, 5, 7, 8, 9, 14, 16, 17, 19, 20, 21, 22, 23, 25, 27, 33, 35, 43, 44, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 71, 76, 77, 78, 79], "arrai": [0, 2, 3, 4, 5, 6, 8, 14, 15, 16, 20, 21, 22, 23, 24, 25, 32, 34, 36, 43, 48, 50, 51, 53, 54, 55, 56, 57, 59, 62, 65, 68, 69, 79], "like": [0, 3, 4, 5, 6, 7, 8, 9, 12, 14, 15, 17, 21, 25, 31, 33, 37, 43, 48, 50, 53, 54, 55, 56, 57, 76, 78, 79], "whose": [0, 4, 5, 8, 14, 15, 17, 23, 25, 43, 46, 48, 49, 50, 51, 54, 55, 57, 68], "need": [0, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 21, 23, 25, 28, 31, 32, 34, 37, 43, 46, 50, 51, 57, 62, 71, 73, 76, 78, 79, 80], "dict": [0, 3, 4, 5, 19, 20, 21, 22, 25, 31, 34, 43, 48, 49, 50, 51, 52, 53, 54, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79], "default": [0, 2, 3, 4, 5, 7, 8, 14, 15, 17, 19, 20, 21, 23, 25, 43, 44, 46, 48, 49, 50, 51, 52, 54, 55, 57, 59, 60, 61, 62, 65, 67, 69, 76, 77, 78, 79, 80], "state": [0, 2, 3, 6, 8, 9, 15, 16, 19, 24, 25, 31, 32, 33, 34, 35, 43, 44, 48, 50, 51, 52, 53, 54, 59, 60, 61, 65, 66, 68, 69, 76, 77, 78], "name": [0, 4, 5, 8, 9, 10, 14, 15, 16, 17, 21, 28, 43, 44, 48, 50, 55, 56, 57, 59, 60, 61, 62, 65, 67, 68, 69, 71, 76, 79], "each": [0, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 19, 20, 21, 23, 24, 25, 28, 34, 35, 38, 40, 41, 43, 46, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 62, 67, 68, 76, 77, 78, 79, 80], "form": [0, 4, 5, 6, 7, 14, 19, 21, 24, 25, 31, 43, 46, 48, 49, 50, 52, 54, 55, 57, 60, 62, 68, 79], "variable_nam": [0, 21, 43, 48, 50], "If": [0, 2, 3, 4, 5, 7, 9, 10, 15, 17, 19, 20, 21, 23, 24, 25, 28, 33, 43, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 65, 67, 71, 73, 76, 77, 78, 79, 80], "i": [0, 2, 3, 4, 5, 7, 8, 10, 11, 12, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 30, 31, 32, 33, 35, 37, 38, 40, 41, 43, 44, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 63, 65, 66, 67, 68, 69, 71, 73, 74, 76, 77, 78, 79, 80], "possibl": [0, 4, 5, 7, 8, 9, 10, 17, 21, 28, 33, 35, 48, 52, 53, 54, 57, 60, 61, 76, 77, 78, 79], "final": [0, 8, 23, 46, 50, 77], "miss": [0, 4, 5, 21, 46, 48, 50, 60, 61, 76, 77, 78, 79], "some": [0, 2, 4, 5, 6, 7, 8, 9, 10, 12, 14, 15, 17, 27, 28, 33, 35, 37, 38, 40, 41, 48, 50, 54, 60, 61, 62, 71, 76, 77, 78, 79], "boolean": [0, 2, 3, 4, 5, 19, 21, 23, 25, 43, 46, 48, 49, 50, 52, 53, 54, 56, 57, 60, 65, 76, 77, 79, 80], "over": [0, 6, 7, 8, 12, 14, 15, 16, 19, 21, 25, 31, 43, 44, 49, 50, 51, 52, 53, 54, 57, 76, 80], "els": [0, 8, 16, 21, 35, 43, 44, 48, 50, 54, 57, 79], "return": [0, 2, 3, 4, 5, 7, 8, 10, 14, 15, 16, 19, 20, 21, 23, 24, 25, 28, 31, 32, 37, 38, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "margin": [0, 6, 9, 12, 14, 25, 31, 38, 43, 48, 51, 77], "queri": [0, 2, 6, 8, 9, 12, 16, 19, 20, 21, 22, 24, 25, 29, 31, 33, 35, 37, 48, 50], "n_sampl": [0, 23, 38, 48, 50, 57, 79], "10000": [0, 15, 32, 39, 40, 41], "evid": [0, 2, 3, 8, 9, 14, 16, 19, 20, 21, 22, 25, 29, 30, 31, 32, 35, 36, 37, 40, 41, 43, 48, 50], "virtual_evid": [0, 19, 20, 25, 33, 38, 48, 50], "show_progress": [0, 2, 8, 19, 21, 25, 35, 46, 48, 50, 60, 77, 79, 80], "seed": [0, 2, 3, 15, 43, 48, 50, 53, 60], "method": [0, 2, 4, 5, 6, 7, 8, 10, 11, 14, 16, 19, 20, 21, 22, 23, 24, 25, 30, 32, 33, 34, 37, 38, 39, 42, 43, 45, 46, 48, 49, 51, 52, 53, 54, 57, 59, 60, 61, 62, 63, 65, 66, 76, 77, 78, 79, 80], "do": [0, 4, 5, 6, 7, 9, 11, 12, 14, 15, 16, 17, 21, 31, 37, 38, 45, 48, 50, 71, 74, 79], "base": [0, 6, 15, 16, 17, 21, 23, 25, 31, 35, 43, 44, 45, 46, 48, 49, 50, 54, 56, 57, 62, 63, 75, 76, 77, 78, 80], "bayesian": [0, 1, 4, 5, 6, 14, 16, 18, 21, 23, 37, 43, 45, 46, 47, 54, 55, 58, 63, 64, 66, 67, 68, 69, 77, 78, 79, 80], "network": [0, 2, 4, 5, 6, 14, 16, 18, 21, 23, 25, 31, 37, 43, 45, 46, 47, 55, 60, 61, 63, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "dynam": [0, 18, 32, 47], "which": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 28, 31, 32, 33, 34, 37, 43, 44, 46, 48, 49, 50, 51, 53, 54, 57, 59, 61, 62, 65, 66, 67, 68, 69, 76, 77, 79], "probabl": [0, 3, 4, 5, 6, 7, 8, 9, 11, 12, 14, 17, 19, 21, 22, 23, 24, 25, 30, 33, 35, 37, 38, 39, 44, 48, 50, 53, 56, 65, 66, 67, 77, 78, 79, 80], "calcul": [0, 15, 23, 43, 44], "int": [0, 2, 3, 4, 5, 17, 23, 34, 38, 39, 43, 44, 46, 48, 49, 50, 51, 53, 54, 57, 59, 60, 61, 65, 67, 69, 77, 78, 79, 80], "The": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 15, 17, 20, 21, 23, 24, 25, 27, 28, 33, 34, 37, 38, 43, 44, 46, 48, 49, 50, 51, 52, 54, 55, 57, 59, 60, 61, 62, 63, 65, 66, 67, 68, 69, 74, 76, 77, 78, 79, 80], "number": [0, 2, 3, 4, 5, 6, 7, 8, 9, 14, 15, 24, 25, 33, 43, 44, 48, 49, 50, 51, 53, 54, 57, 59, 60, 61, 62, 65, 67, 76, 77, 79, 80], "higher": [0, 7, 9, 23, 46, 79], "result": [0, 6, 7, 8, 10, 15, 24, 28, 31, 32, 35, 48, 76, 77, 78, 79], "more": [0, 6, 7, 8, 12, 14, 15, 23, 33, 35, 37, 46, 48, 50, 59, 79], "accur": 0, "cost": [0, 8, 25], "time": [0, 4, 5, 8, 10, 14, 15, 24, 28, 32, 35, 45, 48, 50, 51, 52, 54], "pd": [0, 7, 21, 23, 25, 32, 35, 38, 46, 48, 50, 55, 57, 59, 60, 61, 62, 76, 77, 78, 79, 80], "provid": [0, 2, 3, 4, 5, 6, 7, 8, 9, 14, 15, 17, 24, 25, 30, 32, 34, 38, 43, 48, 50, 57, 59, 63, 66, 74, 76, 77, 78, 79], "instead": [0, 2, 8, 10, 15, 32, 35, 48, 50, 56, 59, 71, 79], "must": [0, 4, 5, 15, 17, 20, 38, 43, 44, 48, 49, 50, 53, 57, 59, 61, 79], "conform": 0, "observ": [0, 4, 5, 6, 7, 8, 9, 10, 20, 21, 27, 28, 32, 35, 48, 50, 51, 53, 55, 57, 60, 61, 62, 66, 76, 77, 78, 79], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 12, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 38, 43, 44, 46, 48, 49, 50, 51, 53, 54, 55, 57, 59, 60, 61, 62, 65, 66, 67, 68, 76, 77, 78, 79, 80], "kei": [0, 4, 5, 8, 10, 15, 16, 19, 20, 22, 25, 28, 48, 49, 50, 51, 54, 57, 62, 67], "pair": [0, 19, 20, 21, 22, 23, 24, 25, 46, 49, 50, 76, 78, 79], "var": [0, 2, 3, 8, 16, 19, 20, 22, 25, 31, 43, 50, 53, 57, 62, 66], "factor": [0, 2, 3, 4, 5, 6, 8, 9, 12, 15, 16, 19, 20, 21, 22, 24, 25, 29, 30, 31, 32, 33, 35, 36, 37, 38, 40, 41, 44, 47, 48, 49, 50, 52, 53, 54, 61, 66], "discret": [0, 2, 3, 4, 5, 6, 7, 9, 14, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 31, 37, 38, 40, 41, 42, 45, 46, 48, 49, 50, 51, 52, 53, 54, 60, 61, 68, 76, 77, 78, 79, 80], "tabularcpd": [0, 2, 3, 4, 5, 9, 14, 16, 19, 20, 22, 25, 27, 29, 30, 31, 33, 34, 37, 38, 40, 41, 48, 50, 55, 59, 60, 61], "repres": [0, 3, 4, 5, 6, 7, 8, 14, 15, 16, 19, 20, 21, 23, 24, 25, 30, 33, 34, 35, 37, 40, 41, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 67, 76, 77, 78, 79, 80], "virtual": [0, 19, 20, 25, 48, 50, 59], "soft": [0, 48, 50], "show": [0, 2, 7, 9, 10, 15, 19, 25, 27, 28, 33, 34, 35, 37, 39, 40, 41, 43, 46, 48, 50, 60, 80], "progress": [0, 2, 19, 25, 46, 48, 50, 60, 80], "bar": [0, 2, 15, 19, 25, 35, 48, 50, 60, 80], "when": [0, 4, 5, 7, 9, 14, 15, 17, 20, 24, 27, 32, 34, 43, 48, 50, 54, 57, 60, 71, 77, 79], "set": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 21, 23, 24, 25, 28, 31, 35, 38, 43, 45, 48, 49, 50, 51, 52, 53, 54, 57, 59, 60, 61, 67, 68, 76, 77, 78, 79, 80], "random": [0, 2, 3, 4, 5, 6, 7, 8, 9, 15, 21, 24, 25, 27, 32, 37, 38, 43, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 76, 77, 78, 79, 80], "type": [0, 2, 3, 4, 5, 9, 11, 14, 15, 16, 21, 23, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 76, 77, 78, 79, 80], "histori": [0, 21, 34, 38, 39], "discretefactor": [0, 3, 20, 21, 24, 35, 43, 44, 49, 51, 52, 54], "phi": [0, 8, 9, 14, 17, 21, 24, 29, 31, 33, 35, 37, 43, 49, 51, 52, 54, 57, 61], "2": [0, 2, 3, 4, 5, 7, 8, 10, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 31, 32, 36, 37, 39, 40, 41, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 66, 67, 68, 71, 76, 77, 78, 79, 80], "0x7f92d9f5b910": 0, "cvp": [0, 21, 34, 38, 39, 48], "3": [0, 2, 3, 4, 5, 6, 7, 10, 14, 15, 16, 19, 20, 22, 23, 24, 25, 27, 28, 29, 31, 32, 36, 37, 39, 40, 41, 43, 44, 46, 48, 49, 50, 53, 54, 56, 57, 60, 65, 66, 67, 68, 69, 73, 76, 77, 78, 79, 80], "0x7f92d9f77610": 0, "fals": [0, 2, 3, 4, 5, 6, 7, 8, 10, 15, 17, 19, 20, 21, 23, 24, 25, 27, 28, 31, 32, 33, 34, 35, 38, 39, 43, 46, 48, 50, 51, 53, 54, 59, 61, 65, 66, 69, 78, 79], "0x7f92dc61eb50": 0, "0x7f92d915ec40": 0, "sampl": [1, 7, 8, 9, 14, 16, 32, 33, 34, 35, 39, 43, 45, 48, 50, 53, 57, 76, 77], "us": [1, 2, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 27, 28, 31, 32, 34, 37, 38, 41, 43, 44, 45, 46, 48, 50, 54, 55, 56, 57, 59, 60, 61, 62, 65, 71, 73, 74, 76, 77, 78, 79, 80], "gibb": 1, "bayesianmodelsampl": [2, 34, 39, 40, 41, 48], "specif": [2, 7, 10, 16, 21, 23, 27, 28, 50, 57, 61], "infer": [2, 4, 5, 6, 10, 11, 14, 15, 19, 20, 24, 25, 28, 31, 35, 37, 40, 41, 45, 50, 57], "forward_sampl": [2, 34, 39, 40, 41, 48], "size": [2, 3, 6, 7, 9, 15, 21, 25, 32, 34, 38, 39, 40, 41, 48, 50, 53, 54, 55, 59, 60, 61, 66, 76, 77, 78, 79, 80], "1": [2, 3, 4, 5, 7, 8, 10, 12, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 31, 32, 36, 37, 39, 40, 41, 43, 44, 46, 48, 49, 50, 51, 52, 53, 54, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 71, 76, 77, 78, 79, 80], "include_lat": [2, 3, 4, 5, 48, 50], "partial_sampl": [2, 38, 48], "n_job": [2, 48, 59, 60, 61, 65, 79, 80], "": [2, 4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 17, 20, 23, 25, 28, 31, 33, 34, 35, 37, 39, 40, 41, 43, 44, 46, 48, 50, 54, 57, 60, 61, 62, 63, 66, 71, 76, 77, 78, 79], "whether": [2, 3, 4, 5, 15, 21, 23, 24, 43, 46, 48, 50, 51, 60, 74, 79], "includ": [2, 3, 4, 5, 10, 14, 17, 21, 28, 35, 48, 50, 74], "latent": [2, 3, 4, 5, 30, 32, 34, 48, 50, 54, 57, 60, 62], "numpi": [2, 3, 6, 7, 8, 14, 15, 16, 24, 25, 32, 35, 36, 43, 44, 48, 50, 51, 52, 55, 59, 60, 61, 73, 76, 77, 78, 79, 80], "get": [2, 6, 8, 9, 10, 12, 15, 16, 20, 27, 28, 31, 32, 43, 50, 63, 65], "specifi": [2, 4, 5, 7, 14, 15, 16, 21, 23, 27, 30, 33, 43, 46, 48, 49, 50, 51, 54, 55, 57, 59, 60, 61, 62, 63, 79], "procedur": [2, 7, 48, 77, 78, 79], "them": [2, 8, 9, 10, 12, 15, 17, 21, 28, 31, 46, 48, 51], "cpu": [2, 35, 48], "core": [2, 8, 10, 48, 79], "all": [2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 15, 16, 17, 20, 21, 24, 25, 27, 28, 31, 33, 34, 35, 38, 43, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 63, 65, 67, 71, 74, 76, 77, 78, 79, 80], "student": [2, 3, 4, 5, 6, 9, 12, 24, 48, 49, 50, 54], "diff": [2, 4, 5, 9, 19, 43, 48, 50, 53, 71], "grade": [2, 4, 5, 9, 12, 19, 43, 48, 50, 53], "intel": [2, 3, 4, 5, 9, 19, 43, 48, 50, 53], "cpd_d": [2, 9, 25, 40, 41], "0": [2, 3, 4, 5, 6, 7, 8, 9, 14, 15, 16, 19, 20, 22, 23, 24, 25, 27, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 43, 44, 46, 48, 50, 51, 53, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 69, 71, 76, 77, 78, 79, 80], "6": [2, 3, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 19, 20, 22, 23, 25, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 39, 40, 41, 43, 44, 46, 48, 49, 50, 53, 54, 56, 65, 68, 69, 76, 77], "4": [2, 3, 4, 5, 6, 7, 8, 10, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32, 34, 37, 39, 40, 41, 43, 44, 46, 48, 49, 50, 51, 53, 54, 56, 59, 61, 65, 67, 68, 69, 77, 78, 79], "cpd_i": [2, 9, 25], "7": [2, 3, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 19, 20, 22, 23, 27, 28, 29, 30, 31, 32, 33, 35, 36, 37, 38, 39, 40, 41, 43, 46, 48, 50, 53, 56, 57, 61, 65, 68, 69], "cpd_g": [2, 9, 19, 25, 31], "05": [2, 3, 7, 8, 9, 16, 20, 23, 30, 43, 44, 46, 50, 65, 68, 69, 79], "9": [2, 4, 5, 6, 7, 8, 9, 14, 15, 16, 19, 20, 22, 27, 28, 29, 30, 31, 33, 35, 38, 39, 41, 43, 44, 48, 50, 65, 68, 69, 77], "5": [2, 3, 4, 5, 6, 7, 8, 10, 14, 15, 16, 17, 19, 20, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32, 34, 35, 36, 37, 39, 40, 41, 43, 44, 46, 48, 50, 53, 55, 59, 60, 61, 71, 76, 77, 78, 79, 80], "25": [2, 6, 7, 9, 10, 14, 15, 29, 35, 43, 50, 51, 53, 59], "08": [2, 9, 43, 48, 50, 60], "02": [2, 8, 9, 16, 30, 33, 50], "add_cpd": [2, 3, 9, 14, 16, 19, 22, 25, 27, 29, 30, 31, 37, 40, 41, 43, 48, 50], "rec": [2, 8], "dtype": [2, 6, 8, 32, 38, 48, 60, 61, 76, 77, 78, 79], "i8": 2, "likelihood_weighted_sampl": 2, "weight": [2, 4, 5, 8, 21, 25, 32, 39, 48, 50, 57, 59, 60, 61, 62, 80], "compli": 2, "probabilist": [2, 4, 5, 7, 8, 9, 16, 19, 32, 45, 48, 50, 57, 61, 77, 79], "graphic": [2, 4, 5, 7, 9, 19, 21, 45, 50, 57, 61, 77, 79], "principl": [2, 4, 5, 7, 50, 57, 77, 79], "techniqu": [2, 4, 5, 6, 7, 50, 57, 71, 77, 79], "koller": [2, 4, 5, 7, 50, 57, 77, 79], "friedman": [2, 4, 5, 7, 50, 57, 77, 79, 80], "algorithm": [2, 4, 5, 6, 7, 8, 9, 12, 14, 20, 21, 22, 24, 25, 31, 33, 34, 39, 41, 44, 50, 51, 54, 57, 60, 61, 77, 78, 80], "12": [2, 6, 7, 8, 14, 28, 35, 43, 44], "pp": [2, 30, 77], "493": 2, "namedtupl": [2, 3, 53], "correspond": [2, 7, 15, 16, 23, 35, 38, 43, 46, 48, 49, 50, 51, 54, 56], "return_typ": [2, 79], "recarrai": 2, "_weight": [2, 59, 61], "f8": 2, "rejection_sampl": 2, "gibbssampl": 3, "perform": [3, 7, 8, 14, 15, 19, 20, 21, 22, 24, 27, 35, 77], "markovnetwork": [3, 19, 24, 54], "ar": [3, 4, 5, 6, 7, 8, 10, 12, 14, 15, 16, 17, 20, 21, 23, 24, 25, 27, 28, 30, 32, 33, 34, 35, 38, 40, 43, 44, 45, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 62, 67, 71, 76, 77, 78, 79, 80], "inherit": [3, 14, 25, 27, 31, 62, 63], "transit": [3, 53, 66], "object": [3, 4, 5, 9, 14, 15, 16, 21, 24, 25, 32, 43, 44, 48, 49, 50, 51, 53, 54, 55, 57, 59, 60, 61, 62, 63, 65, 66, 69, 76, 77, 78, 79, 80], "intel_cpd": [3, 19, 43, 48, 50], "sat_cpd": [3, 19, 48], "sat": [3, 4, 5, 9, 19, 48, 50], "95": [3, 8, 9, 16, 30, 48, 65, 66, 68, 69], "8": [3, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 19, 20, 22, 27, 28, 29, 30, 31, 32, 33, 35, 36, 38, 39, 40, 41, 43, 44, 48, 49, 50, 57, 66, 68, 69, 73], "evidence_card": [3, 9, 16, 19, 22, 29, 30, 31, 37, 40, 41, 43, 48, 50], "add_nodes_from": [3, 4, 5, 20, 24, 27, 35, 48, 49, 50, 51, 52, 54, 55], "add_edg": [3, 4, 5, 10, 27, 28, 48, 49, 50, 51, 52, 54, 55], "gibbs_chain": 3, "generate_sampl": [3, 15, 53, 57], "start_stat": [3, 53], "version": [3, 10, 17, 28, 50, 53, 68, 71, 79], "self": [3, 4, 5, 15, 21, 31, 43, 44, 48, 50, 53], "assign": [3, 8, 9, 14, 17, 24, 43, 50, 53, 59, 61], "b": [3, 4, 5, 7, 8, 9, 10, 15, 16, 17, 20, 21, 24, 25, 28, 38, 39, 40, 41, 43, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 68, 71, 76, 77, 78, 79, 80], "c": [3, 4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 20, 22, 24, 25, 28, 29, 37, 40, 41, 43, 48, 49, 50, 51, 52, 54, 55, 59, 60, 61, 65, 68, 69, 73, 74, 76, 77, 78, 79, 80], "factor_ab": 3, "factor_cb": 3, "add_factor": [3, 20, 24, 35, 49, 51, 52, 54], "gen": [3, 53], "markov": [3, 4, 5, 6, 8, 15, 16, 21, 27, 47, 48, 50, 51, 66, 67], "chain": [3, 4, 5, 9, 15, 31, 35, 47, 50], "iter": [3, 4, 5, 7, 9, 15, 16, 24, 35, 48, 49, 50, 53, 60, 61, 62, 77], "start": [3, 4, 5, 7, 8, 9, 10, 15, 17, 28, 43, 50, 53, 55, 57, 60, 62, 71, 77], "pass": [3, 4, 5, 9, 16, 17, 18, 21, 23, 24, 33, 38, 44, 46, 48, 49, 50, 52, 53, 54, 57, 79], "chosen": [3, 8, 53, 57], "return_tup": 3, "ebunch": [4, 5, 34, 48, 49, 50, 51, 52, 54, 55, 57], "node": [4, 5, 6, 7, 8, 9, 10, 15, 16, 20, 21, 22, 24, 25, 27, 28, 30, 31, 33, 34, 35, 39, 40, 41, 44, 48, 49, 50, 51, 52, 54, 55, 57, 59, 61, 76, 77, 78, 79, 80], "can": [4, 5, 6, 7, 8, 9, 10, 12, 14, 15, 16, 17, 23, 24, 27, 28, 30, 31, 32, 33, 34, 35, 37, 38, 39, 43, 46, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 62, 63, 71, 76, 77, 78, 79], "either": [4, 5, 8, 10, 17, 21, 28, 30, 32, 33, 43, 46, 48, 50, 57, 59, 62, 77, 79], "cluster": [4, 5, 24, 47], "edg": [4, 5, 7, 8, 9, 10, 16, 21, 24, 25, 27, 28, 30, 33, 34, 35, 38, 40, 41, 43, 46, 48, 49, 50, 51, 52, 54, 55, 57, 65, 67, 68, 69, 76, 77, 78, 79, 80], "depend": [4, 5, 7, 9, 14, 15, 16, 32, 54, 55, 73, 77, 78, 79, 80], "between": [4, 5, 6, 7, 8, 9, 15, 17, 21, 23, 24, 43, 46, 48, 49, 50, 51, 52, 53, 54, 55, 57, 77, 79], "input": [4, 5, 6, 8, 14, 19, 22, 32, 48, 49, 50, 51, 52, 54], "an": [4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 20, 21, 24, 25, 27, 32, 33, 34, 35, 37, 40, 41, 43, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 61, 63, 66, 67, 68, 74, 76, 77, 78, 79, 80], "empti": [4, 5, 10, 17, 48, 49, 50, 51, 52, 53, 54, 76], "creat": [4, 5, 7, 8, 15, 16, 17, 19, 21, 27, 31, 33, 35, 48, 49, 50, 51, 52, 53, 54, 57, 63, 65, 71, 76, 77], "ani": [4, 5, 7, 8, 9, 10, 15, 17, 21, 23, 25, 27, 28, 30, 32, 37, 38, 43, 46, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 61, 71, 74, 77, 78, 79, 80], "networkx": [4, 5, 10, 27, 35, 39, 40, 41, 48, 50, 54, 76, 79, 80], "g": [4, 5, 6, 7, 9, 12, 14, 15, 17, 19, 21, 25, 31, 32, 35, 39, 43, 44, 46, 48, 49, 50, 51, 52, 54, 55, 77, 79], "grown": [4, 5, 48, 49, 51, 52, 54], "sever": [4, 5, 8, 48, 53, 54], "wai": [4, 5, 7, 8, 9, 10, 27, 28, 30, 33, 35, 48, 50, 54, 63, 68, 71, 79], "add": [4, 5, 7, 12, 15, 17, 30, 31, 32, 35, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 65, 66, 67, 69, 71, 77], "one": [4, 5, 7, 8, 10, 14, 15, 17, 20, 23, 28, 31, 35, 37, 40, 41, 46, 48, 50, 51, 52, 54, 55, 57, 59, 61, 76, 77, 78, 79, 80], "add_nod": [4, 5, 10, 27, 28, 35, 48, 49, 50, 51, 52, 54], "contain": [4, 5, 7, 8, 17, 21, 24, 25, 43, 48, 49, 50, 51, 54, 55, 56, 57, 59, 60, 61, 62, 65, 66, 67, 68, 76, 77, 78, 79], "tupl": [4, 5, 8, 21, 24, 25, 32, 35, 43, 48, 49, 50, 52, 53, 54, 55, 56, 57, 62, 67, 68, 76, 79], "anoth": [4, 5, 8, 10, 15, 17, 28, 37, 48, 54], "also": [4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 20, 23, 27, 28, 30, 31, 33, 34, 37, 38, 45, 46, 48, 49, 50, 51, 52, 54, 56, 63, 77, 79], "ad": [4, 5, 6, 7, 8, 9, 20, 24, 25, 27, 31, 32, 34, 43, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 59, 66, 71], "u": [4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 28, 45, 46, 48, 49, 50, 51, 52, 54, 55, 57, 71], "v": [4, 5, 7, 8, 9, 10, 15, 16, 28, 46, 48, 49, 50, 51, 52, 54, 55, 57], "add_edges_from": [4, 5, 20, 22, 24, 27, 35, 41, 48, 49, 50, 51, 52, 54, 55, 61], "connect": [4, 5, 9, 23, 27, 46, 48, 49, 50, 54, 57, 71, 74, 78, 79], "yet": [4, 5, 48, 54], "automat": [4, 5, 9, 14, 25, 48, 50, 54, 55, 57], "There": [4, 5, 6, 8, 9, 12, 14, 16, 17, 30, 48, 50, 54, 71], "error": [4, 5, 8, 10, 17, 21, 32, 38, 48, 49, 50, 51, 52, 54, 57, 78], "alreadi": [4, 5, 7, 9, 10, 38, 48, 50, 54, 55], "exist": [4, 5, 7, 9, 10, 14, 28, 48, 50, 53, 54], "shortcut": [4, 5, 34, 48, 54], "mani": [4, 5, 7, 8, 10, 14, 28, 40, 41, 48, 54, 71], "common": [4, 5, 8, 9, 10, 12, 14, 15, 28, 48, 50, 54], "featur": [4, 5, 6, 7, 8, 9, 10, 17, 28, 31, 48, 54, 55, 71, 80], "allow": [4, 5, 7, 8, 12, 14, 16, 17, 38, 48, 50, 51, 54, 60, 77, 79, 80], "python": [4, 5, 16, 17, 25, 43, 45, 48, 49, 50, 51, 53, 54, 55, 59, 61, 63, 71, 73, 80], "syntax": [4, 5, 17, 48, 50, 54, 57, 71], "speed": [4, 5, 48, 54], "report": [4, 5, 7, 48, 50, 54, 71], "check": [4, 5, 7, 8, 9, 14, 17, 23, 27, 30, 37, 38, 43, 46, 48, 49, 50, 51, 52, 53, 54, 60, 71, 79], "len": [4, 5, 8, 16, 48, 54, 57, 79], "active_trail_nod": [4, 5, 8, 9, 27, 50, 55, 57], "dictionari": [4, 5, 21, 24, 43, 48, 49, 50, 51, 52, 54, 60, 62, 66, 67, 68], "reachabl": [4, 5, 50, 55], "respect": [4, 5, 8, 17, 38, 43, 48, 49, 50, 51, 54, 57], "str": [4, 5, 8, 20, 21, 23, 25, 43, 46, 48, 50, 51, 55, 57, 62, 65, 66, 67, 68, 69, 77, 79, 80], "activ": [4, 5, 8, 9, 10, 28, 50, 55, 57], "trail": [4, 5, 8, 9, 17, 50, 55, 57], "found": [4, 5, 7, 8, 43, 50, 55, 57, 59], "option": [4, 5, 14, 15, 17, 20, 21, 23, 25, 33, 46, 48, 49, 50, 51, 54, 55, 57, 60, 61, 62, 63, 66, 68, 69, 71, 73, 76, 77, 78, 79, 80], "would": [4, 5, 6, 8, 9, 10, 12, 14, 15, 16, 28, 33, 43, 48, 49, 50, 51, 54, 55, 57, 80], "assum": [4, 5, 10, 14, 28, 43, 50, 55, 57, 59, 60, 79], "refer": [4, 5, 10, 17, 20, 21, 22, 24, 25, 27, 28, 33, 41, 43, 44, 48, 50, 54, 56, 57, 59, 61, 63, 77, 78, 79, 80], "detail": [4, 5, 6, 7, 15, 21, 23, 25, 46, 48, 50, 57, 59], "page": [4, 5, 7, 17, 37, 45, 50, 57, 77, 79], "75": [4, 5, 7, 8, 10, 28, 29, 43, 50, 53, 57, 59, 76], "thei": [4, 5, 7, 8, 15, 21, 23, 25, 43, 46, 48, 50, 51, 54, 55, 77, 78, 79], "hashabl": [4, 5, 25, 43, 48, 49, 50, 51, 53, 54, 55, 59, 61, 79, 80], "float": [4, 5, 8, 21, 23, 43, 44, 46, 48, 50, 53, 60, 61, 76, 77, 78, 79], "alic": [4, 5, 49, 54], "bob": [4, 5, 15, 49, 54], "charl": [4, 5, 54], "nodeview": [4, 5, 22, 34, 48, 50, 51], "outedgeview": [4, 5, 16, 48, 50, 55, 77], "present": [4, 5, 14, 16, 24, 49, 50, 51, 54, 55, 65, 68, 69], "ankur": [4, 5, 7, 28, 45, 79], "maria": [4, 5], "behavior": [4, 5, 15], "differ": [4, 5, 7, 8, 9, 10, 14, 16, 17, 23, 28, 32, 33, 35, 43, 46, 50, 57, 63, 77, 79], "than": [4, 5, 6, 7, 8, 9, 14, 15, 17, 24, 43, 50, 60, 77, 79], "index": [4, 5, 8, 15, 32, 43, 45, 50, 66, 67, 71], "associ": [4, 5, 6, 9, 15, 30, 37, 48, 49, 50, 51, 54, 57, 74, 79], "mason": [4, 5], "singl": [4, 5, 7, 8, 15, 17, 23, 34, 35, 49, 50, 52, 59], "sort": [4, 5, 8, 32, 35, 48, 50, 77], "access": [4, 5, 7, 17, 30, 50, 71], "multipl": [4, 5, 6, 12, 20, 48, 49, 50, 53, 79], "behviour": [4, 5], "tell": [4, 5], "d": [4, 5, 6, 7, 9, 10, 12, 15, 16, 20, 21, 23, 24, 25, 28, 40, 41, 43, 46, 48, 50, 55, 57, 59, 60, 61, 68, 71, 77, 78, 79, 80], "e": [4, 5, 7, 8, 9, 10, 15, 16, 17, 21, 23, 24, 25, 28, 30, 37, 40, 41, 43, 44, 46, 48, 50, 54, 55, 60, 61, 68, 77, 78, 79, 80], "inplac": [4, 5, 21, 30, 31, 35, 43, 48, 50, 54, 66, 68, 69], "appli": [4, 5, 6, 9, 14, 21, 32, 48, 50], "oper": [4, 5, 6, 9, 12, 14, 15, 21, 45, 48, 50, 77], "new": [4, 5, 6, 7, 10, 15, 16, 27, 28, 31, 35, 43, 48, 50, 54, 55, 57, 62, 71], "transform": [4, 5, 8, 50, 57], "x": [4, 5, 7, 8, 9, 10, 12, 14, 15, 16, 17, 21, 22, 23, 28, 29, 35, 40, 41, 43, 44, 46, 48, 49, 50, 51, 53, 54, 57, 62, 66, 71, 78, 79], "ha": [4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 23, 24, 25, 28, 31, 33, 34, 35, 37, 39, 43, 46, 50, 53, 57, 63, 68, 77], "effect": [4, 5, 8, 9, 10, 21, 28, 50], "remov": [4, 5, 7, 8, 10, 15, 17, 21, 25, 27, 28, 38, 43, 48, 49, 50, 51, 54, 57, 79], "parent": [4, 5, 6, 7, 8, 9, 10, 14, 21, 27, 28, 43, 48, 50, 54, 55, 57, 65, 66, 68, 69, 77, 78], "make": [4, 5, 6, 7, 8, 9, 12, 15, 17, 21, 48, 50, 51, 57, 71, 78, 79], "chang": [4, 5, 9, 10, 15, 17, 43, 48, 50, 57, 60, 68, 71, 77], "current": [4, 5, 7, 8, 10, 16, 17, 23, 24, 25, 33, 39, 46, 48, 50], "otherwis": [4, 5, 9, 15, 17, 20, 21, 23, 37, 43, 46, 48, 50, 74, 79], "modifi": [4, 5, 7, 9, 15, 21, 39, 43, 48, 50, 74, 79], "y": [4, 5, 7, 10, 14, 15, 16, 21, 22, 23, 28, 29, 35, 36, 43, 46, 48, 50, 53, 57, 62, 78, 79], "desir": [4, 5, 16, 31, 50, 71, 78], "graph_do_a": [4, 5, 50], "we": [4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 21, 23, 24, 25, 27, 28, 31, 32, 33, 34, 35, 37, 39, 40, 43, 46, 48, 49, 50, 51, 54, 71, 78], "verifi": [4, 5, 9, 34, 35, 50, 71], "expect": [4, 5, 8, 17, 34, 45, 50, 58, 79], "causal": [4, 5, 8, 9, 18, 45, 50, 57, 79], "reason": [4, 5, 8, 15, 21, 50], "judea": [4, 5, 10, 21, 28, 50], "pearl": [4, 5, 10, 21, 28, 50], "2000": [4, 5, 15, 21, 50, 79], "p": [4, 5, 6, 7, 9, 10, 12, 14, 15, 21, 23, 28, 30, 33, 34, 37, 38, 40, 41, 43, 46, 48, 50, 55, 59, 60, 61, 62, 79], "70": [4, 5, 50], "get_ancestral_graph": [4, 5, 50], "ancestr": [4, 5, 21, 50], "onli": [4, 5, 7, 8, 9, 10, 12, 14, 15, 16, 20, 23, 24, 28, 45, 46, 48, 50, 51, 54, 55, 60, 61, 71, 76, 77, 78, 79, 80], "ancestor": [4, 5, 50], "atleast": [4, 5, 50], "anc_dag": [4, 5, 50], "get_children": [4, 5, 27, 50], "children": [4, 5, 27, 48, 50, 78], "throw": [4, 5, 37, 48, 50], "string": [4, 5, 8, 15, 21, 25, 43, 44, 48, 50, 54, 57, 59, 61, 65, 66, 67, 68, 69, 71, 79, 80], "f": [4, 5, 7, 8, 10, 17, 24, 27, 28, 29, 30, 35, 40, 50, 71, 77, 78], "get_immor": [4, 5, 50], "find": [4, 5, 6, 7, 8, 9, 12, 15, 24, 27, 33, 37, 43, 50, 57, 62, 76, 77], "immor": [4, 5, 50, 57], "z": [4, 5, 7, 8, 10, 14, 15, 21, 22, 23, 28, 29, 43, 46, 48, 50, 57, 78, 79], "letter": [4, 5, 19, 39, 48, 50, 79], "get_independ": [4, 5, 8, 27, 43, 50], "latex": [4, 5, 48, 50, 54], "independ": [4, 5, 6, 8, 14, 15, 27, 39, 43, 46, 50, 54, 55, 77, 78, 80], "seper": [4, 5, 7, 50, 78, 79], "assert": [4, 5, 8, 35, 50, 54, 79], "get_leav": [4, 5, 27, 50], "leav": [4, 5, 27, 50], "get_markov_blanket": [4, 5, 8, 27, 48, 50], "blanket": [4, 5, 8, 27, 48, 50, 54], "In": [4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 17, 28, 31, 32, 33, 34, 35, 39, 40, 41, 48, 50, 51, 52, 57, 71, 79, 80], "case": [4, 5, 6, 7, 8, 9, 10, 14, 15, 16, 17, 28, 33, 34, 48, 50, 55, 60, 62, 66, 67, 76, 77, 79], "its": [4, 5, 8, 9, 10, 14, 15, 17, 25, 30, 35, 48, 50, 51, 52, 53, 54, 68], "other": [4, 5, 6, 7, 8, 10, 14, 16, 28, 31, 37, 38, 46, 48, 50, 51, 52, 54, 57, 63, 71, 74, 79], "w": [4, 5, 6, 29, 32, 43, 48, 50, 54, 57, 62, 78], "t": [4, 5, 6, 7, 9, 10, 14, 15, 16, 17, 23, 28, 32, 34, 37, 43, 46, 48, 50, 57, 62, 71], "m": [4, 5, 7, 10, 15, 28, 29, 32, 48, 49, 50, 51, 54, 57, 71, 79, 80], "n": [4, 5, 7, 8, 14, 15, 27, 30, 32, 35, 39, 43, 48, 50, 62, 66, 76, 80], "q": [4, 5, 10, 15, 19, 28, 31, 33, 48, 50, 62], "get_par": [4, 5, 27, 50, 65, 69], "static": [4, 5, 6, 20, 43, 48, 50, 79], "get_random": [4, 5, 30, 43, 48, 50], "n_node": [4, 5, 30, 48, 50], "edge_prob": [4, 5, 30, 48, 50], "randomli": [4, 5, 37, 48, 50, 57, 60], "being": [4, 5, 7, 8, 10, 20, 28, 50, 57, 62], "two": [4, 5, 6, 7, 9, 10, 12, 14, 17, 23, 27, 28, 30, 33, 34, 35, 46, 48, 49, 50, 51, 52, 54, 57, 63, 68, 77, 79], "topolog": [4, 5, 23, 48, 50], "bool": [4, 5, 21, 24, 43, 46, 48, 50, 59, 61, 65, 66, 68, 69, 79], "random_dag": [4, 5, 50], "10": [4, 5, 6, 7, 8, 14, 15, 27, 28, 32, 34, 35, 36, 38, 43, 44, 45, 48, 50, 54, 61, 66, 67, 77, 78, 79], "get_root": [4, 5, 27, 50], "root": [4, 5, 9, 20, 27, 50, 68, 80], "in_degree_it": [4, 50], "nbunch": [4, 50], "is_dconnect": [4, 5, 27, 50], "end": [4, 5, 7, 8, 15, 17, 50], "is_iequival": [4, 5, 50], "equival": [4, 5, 7, 8, 12, 14, 15, 21, 38, 43, 50, 57, 59, 77, 79], "g1": [4, 5, 50], "g2": [4, 5, 50], "said": [4, 5, 10, 28, 50], "have": [4, 5, 6, 7, 8, 9, 10, 12, 14, 15, 17, 21, 23, 24, 25, 28, 32, 33, 34, 35, 37, 43, 46, 48, 49, 50, 51, 54, 57, 71, 76, 77, 79], "same": [4, 5, 8, 12, 15, 17, 23, 43, 46, 48, 49, 50, 51, 52, 55, 57, 71, 79], "skeleton": [4, 5, 7, 39, 50, 78, 79], "you": [4, 5, 7, 10, 15, 16, 17, 19, 20, 22, 25, 28, 33, 37, 43, 45, 48, 50, 71], "want": [4, 5, 6, 7, 9, 10, 12, 14, 15, 16, 19, 20, 22, 24, 25, 28, 37, 43, 48, 49, 50, 51, 54, 71], "both": [4, 5, 6, 7, 8, 9, 10, 15, 28, 33, 50, 57, 63, 71, 73, 79], "local_independ": [4, 5, 8, 9, 27, 50, 55], "local": [4, 5, 7, 8, 9, 10, 24, 27, 44, 50, 54, 55, 71, 77, 78], "ind": [4, 5, 50, 55], "minimal_dsepar": [4, 5, 27, 50], "minim": [4, 5, 8, 21, 27, 43, 50, 54, 77], "separ": [4, 5, 6, 9, 23, 38, 46, 48, 50, 51, 52, 54, 59, 79], "first": [4, 5, 7, 9, 10, 15, 16, 21, 24, 25, 34, 44, 48, 50, 76, 78, 79], "second": [4, 5, 6, 7, 8, 9, 15, 50, 51, 54, 79], "tian": [4, 5, 50], "jin": [4, 5, 50], "azaria": [4, 5, 50], "paz": [4, 5, 50], "scienc": [4, 5, 45, 50], "depart": [4, 5, 50], "univers": [4, 5, 50], "california": [4, 5, 50], "1998": [4, 5, 50], "moral": [4, 5, 48, 50, 57], "undirectedgraph": [4, 5, 50, 57, 78, 79], "moral_graph": [4, 5, 50], "edgeview": [4, 5, 48, 50, 52, 54], "out_degree_it": [4, 50], "to_daft": [4, 5, 29, 50, 63], "node_po": [4, 5, 29, 50, 63], "circular": [4, 5, 15, 50], "pgm_param": [4, 5, 50, 63], "edge_param": [4, 5, 50, 63], "node_param": [4, 5, 50, 63], "daft": [4, 5, 10, 28, 50], "http": [4, 5, 8, 10, 17, 20, 22, 23, 25, 27, 30, 33, 37, 39, 45, 46, 50, 54, 56, 57, 61, 63, 65, 66, 67, 68, 69, 71, 73, 77, 78, 79], "doc": [4, 5, 17, 50, 63, 67, 71], "pgm": [4, 5, 6, 10, 16, 28, 43, 50, 63], "org": [4, 5, 17, 23, 25, 27, 37, 39, 45, 46, 50, 57, 63, 68, 71, 78, 79], "en": [4, 5, 17, 37, 39, 50, 57, 71, 79], "latest": [4, 5, 17, 50, 73], "render": [4, 5, 9, 10, 28, 29, 50, 63], "public": [4, 5, 63], "qualiti": [4, 5, 50, 63], "plot": [4, 5, 6, 15, 50], "call": [4, 5, 7, 9, 15, 16, 19, 27, 48, 50, 51, 54, 62, 71], "see": [4, 5, 6, 7, 9, 12, 15, 17, 31, 37, 48, 49, 50, 51, 54, 59, 71, 78], "follow": [4, 5, 6, 7, 8, 10, 15, 16, 17, 23, 28, 33, 37, 39, 43, 46, 48, 49, 50, 51, 52, 54, 57, 59, 73, 74], "kamada_kawai": [4, 5, 50], "planar": [4, 5, 50], "shell": [4, 5, 50, 63], "sprint": [4, 5, 50], "spectral": [4, 5, 50], "spiral": [4, 5, 50], "pleas": [4, 5, 7, 10, 15, 17, 21, 25, 27, 28, 33, 43, 45, 48, 50, 63, 71], "document": [4, 5, 7, 8, 32, 50, 63, 71, 74], "stabl": [4, 5, 23, 39, 46, 50, 63, 79], "draw": [4, 5, 15, 27, 30, 35, 38, 50], "html": [4, 5, 8, 20, 23, 25, 27, 46, 50, 57, 63, 68, 71], "modul": [4, 5, 7, 10, 14, 23, 25, 45, 46, 50, 63, 71], "layout": [4, 5, 50, 63], "should": [4, 5, 7, 8, 15, 17, 19, 25, 27, 37, 38, 43, 46, 48, 49, 50, 55, 57, 60, 61, 62, 71, 76, 77, 78, 79], "coordin": [4, 5, 16, 50], "describ": [4, 5, 14, 15, 23, 32, 46, 50, 77], "argument": [4, 5, 9, 15, 16, 21, 23, 33, 38, 43, 46, 48, 50, 53, 79], "addit": [4, 5, 21, 23, 46, 48, 50, 77, 79], "param_nam": [4, 5, 50], "param_valu": [4, 5, 50], "u1": [4, 5, 36, 50], "v1": [4, 5, 50], "u2": [4, 5, 36, 50], "v2": [4, 5, 50], "node1": [4, 5, 10, 28, 50], "node2": [4, 5, 10, 28, 50], "0x7fc756e936d0": [4, 5, 50], "0x7f9bb48c5eb0": [4, 5, 50], "observed_styl": [4, 5, 50, 63], "inner": [4, 5, 24, 50], "0x7f9bb48b0bb0": [4, 5, 50], "label": [4, 5, 6, 8, 15, 17, 35, 50, 63], "shape": [4, 5, 8, 10, 23, 28, 38, 48, 50, 57, 59, 63], "rectangl": [4, 5, 50, 63], "to_graphviz": [4, 5, 27, 30, 50, 63], "retun": [4, 5, 21, 50], "pygraphviz": [4, 5, 50], "visual": [4, 5, 6, 15, 27, 30, 50, 63], "agraph": [4, 5, 50], "swig": [4, 5, 50], "agraph_t": [4, 5, 50], "0x7fdea4cde040": [4, 5, 50], "png": [4, 5, 6, 9, 17, 27, 30, 32, 37, 50, 63], "prog": [4, 5, 27, 30, 50, 63], "neato": [4, 5, 30, 50, 63], "directed_ebunch": [4, 5], "undirected_ebunch": [4, 5], "known": [4, 5, 8, 9, 14, 15, 30, 48, 50, 79], "undirect": [4, 5, 6, 7, 49, 50, 51, 52, 54, 57, 61, 78, 79], "note": [4, 5, 7, 8, 17, 48, 50, 60, 61, 76, 77, 78, 79], "thi": [4, 5, 6, 7, 8, 10, 12, 14, 15, 16, 17, 20, 21, 23, 24, 25, 27, 28, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 44, 46, 48, 49, 50, 51, 52, 54, 56, 57, 59, 62, 66, 71, 74, 76, 77, 78, 79], "copi": [4, 5, 17, 21, 43, 48, 49, 50, 51, 52, 53, 54, 74], "to_dag": [4, 5, 7], "required_edg": [4, 5], "cpdag": [5, 79], "ipython": [6, 8, 9, 11, 14, 27, 30, 37], "displai": [6, 8, 9, 11, 14, 17, 27, 30, 37], "imag": [6, 9, 11, 14, 27, 30, 32, 37, 50], "major": 6, "scientif": [6, 17, 45], "disciplin": 6, "explor": [6, 7, 15, 77, 78], "construct": [6, 9, 21, 40, 46, 80], "studi": [6, 8], "Such": 6, "build": [6, 7, 10, 15, 28, 35, 37, 40, 41], "predict": [6, 7, 15, 23, 46, 48, 55, 79], "decis": [6, 44, 66, 79], "rather": [6, 7, 8, 9, 71], "strictli": [6, 8, 48, 51, 52, 54], "program": [6, 17, 24], "instruct": [6, 17], "take": [6, 7, 8, 9, 10, 12, 14, 15, 16, 28, 30, 31, 32, 48, 50, 60, 61, 76, 77, 78], "flower": 6, "sepal": 6, "length": [6, 15, 77], "width": [6, 24, 25, 32], "let": [6, 9, 12, 14, 15, 16, 37, 54, 71], "sai": [6, 9, 15, 23, 24, 37, 43, 46], "iri": 6, "dataset": [6, 23, 34, 46, 48, 60, 79], "look": [6, 9, 10, 14, 15, 17, 28, 50, 55, 71], "someth": [6, 10, 28, 71], "run": [6, 10, 15, 17, 20, 24, 25, 46, 49, 52, 53, 59, 60, 61, 65, 71, 77, 79, 80], "script": 6, "py": [6, 7, 10, 15, 17, 28, 32], "134": 6, "148": 6, "48": [6, 9, 35, 77], "86": [6, 48], "79": [6, 8, 71], "26": [6, 10, 14], "101": 6, "71": [6, 8], "119": 6, "150": [6, 16], "row": [6, 8, 9, 23, 34, 38, 39, 40, 41, 43, 53, 59, 61], "column": [6, 7, 8, 21, 23, 25, 32, 34, 35, 38, 39, 40, 41, 43, 48, 50, 55, 59, 60, 61, 76, 77, 78, 79, 80], "now": [6, 7, 9, 10, 12, 14, 15, 16, 28, 35, 48, 49, 51, 54], "point": [6, 10, 15, 23, 27, 28, 44, 50, 51, 65, 67, 77], "solv": [6, 10, 28, 71], "problem": [6, 7, 8, 15, 32, 50, 65, 66, 69], "consid": [6, 8, 9, 10, 15, 23, 28, 43, 45, 46, 57, 68, 77], "could": [6, 8], "function": [6, 8, 14, 15, 16, 17, 20, 23, 25, 31, 38, 44, 46, 49, 51, 54, 56, 62, 63, 66, 67, 71, 77, 79, 80], "directli": [6, 7, 14, 16, 35, 50, 53, 63, 71, 78, 79], "map": [6, 7, 8, 9, 15, 19, 24, 25, 33, 35, 43, 48, 49, 50, 52, 54, 66], "answer": [6, 8, 9], "about": [6, 7, 8, 9, 10, 12, 17, 28, 44, 71], "lot": [6, 9, 33, 63, 79], "For": [6, 7, 8, 9, 10, 14, 15, 16, 17, 22, 23, 24, 27, 28, 31, 32, 34, 37, 38, 39, 41, 43, 44, 46, 48, 50, 51, 54, 57, 67, 71, 73], "linear": [6, 21, 24, 79], "regress": [6, 21, 32, 57, 79], "tri": [6, 62], "equat": [6, 9, 12, 14, 21, 32, 47, 58], "explain": [6, 10, 28], "support": [6, 7, 8, 14, 16, 23, 33, 46, 50, 63, 66, 71, 77, 80], "vector": [6, 14, 15, 43], "plane": 6, "tree": [6, 15, 19, 35, 45, 47, 48, 51, 54, 61, 75], "simpl": [6, 7, 14, 21, 31, 33, 50, 79], "greater": [6, 50, 77, 79], "less": [6, 7, 8, 60, 77, 78, 79], "classifi": [6, 41, 80], "try": [6, 8, 9, 10, 12, 28, 33, 34, 71], "matplotlib": [6, 10, 15, 28, 29, 32, 35, 40, 41, 63, 80], "inlin": [6, 10, 15, 17, 28, 32], "pyplot": [6, 10, 15, 28, 32, 35, 40, 41, 63, 80], "plt": [6, 10, 15, 28, 35, 40, 41, 63, 80], "np": [6, 7, 8, 14, 15, 16, 20, 21, 23, 24, 25, 32, 34, 35, 36, 38, 39, 43, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 59, 60, 61, 62, 65, 76, 77, 78, 79, 80], "littl": 6, "bit": [6, 9, 15], "nois": 6, "so": [6, 7, 8, 9, 10, 12, 14, 15, 17, 19, 23, 28, 33, 37, 43, 50, 71, 74, 76], "easier": 6, "data_with_nois": 6, "iloc": [6, 8], "normal": [6, 7, 14, 15, 17, 23, 31, 32, 34, 38, 39, 43, 44, 48, 50], "loc": 6, "scale": [6, 57], "scatter": [6, 15], "bgr": 6, "k": [6, 14, 15, 32, 50, 62, 79, 80], "200": [6, 15], "alpha": [6, 14, 15, 35, 40, 41, 49, 80], "lt": [6, 9, 15, 16, 29, 30, 33, 34, 35, 37, 39, 40, 41], "collect": [6, 24, 45, 49, 50], "pathcollect": 6, "0x134b10890": 6, "gt": [6, 9, 10, 15, 16, 29, 30, 33, 34, 35, 37, 40, 41], "easili": [6, 32], "blue": [6, 17, 50], "concentr": 6, "top": [6, 8, 35], "left": [6, 15, 17, 43], "corner": 6, "green": [6, 17], "ones": [6, 7, 8, 9, 14, 25, 43, 54, 76], "bottom": [6, 35], "red": [6, 15, 17, 35, 50], "right": [6, 15, 17, 32, 74], "train": [6, 48], "sklearn": [6, 39], "decisiontreeclassifi": 6, "model_select": 6, "train_test_split": 6, "x_train": 6, "x_test": 6, "y_train": 6, "y_test": 6, "test_siz": 6, "max_depth": 6, "fit": [6, 7, 8, 23, 25, 32, 34, 39, 40, 41, 46, 48, 50, 55, 57, 61, 62, 74, 76, 79, 80], "score": [6, 8, 9, 23, 39, 46, 76, 78, 80], "5666666666666667": 6, "got": [6, 8, 9], "classif": [6, 23, 41, 46], "accuraci": 6, "60": [6, 9, 16], "move": [6, 10, 15, 32], "our": [6, 7, 9, 10, 12, 15, 16, 28, 31, 35], "approach": [6, 7, 8, 79], "most": [6, 8, 9, 10, 14, 28, 31, 43, 50, 68, 77], "obviou": [6, 9], "task": [6, 7, 8, 9], "reduc": [6, 9, 14, 31, 32, 33, 43], "accord": [6, 7, 15, 17, 23, 43, 46, 50, 76, 77], "120": [6, 71], "135": 6, "69": [6, 69], "139": 6, "90": [6, 48], "joint_prob": 6, "groupbi": [6, 38], "008333": 6, "033333": 6, "191667": 6, "016667": 6, "141667": 6, "075000": 6, "025000": 6, "225000": 6, "200000": 6, "041667": 6, "066667": 6, "116667": 6, "float64": [6, 32, 38], "select": [6, 7, 21, 37, 50, 57], "just": [6, 7, 9, 10, 14, 17, 25, 28, 31, 34, 35, 50, 71], "x_test_featur": 6, "x_test_actual_result": 6, "predicted_valu": 6, "append": [6, 8, 10, 16], "idxmax": 6, "compar": [6, 23, 31, 35, 46, 79], "actual": [6, 7, 10, 15, 17, 25, 28, 53, 59, 66, 71], "11": [6, 7, 8, 10, 14, 27, 28, 34, 35, 39, 43, 73], "sum": [6, 8, 9, 14, 15, 25, 43, 48, 50, 51, 53, 54, 78, 80], "30": [6, 10, 15, 35, 39, 40, 41, 43], "print": [6, 7, 8, 9, 10, 14, 15, 16, 17, 27, 28, 29, 30, 31, 33, 34, 35, 37, 38, 39, 40, 41, 43, 59, 61, 76, 78, 79], "6333333333333333": 6, "previou": [6, 7, 9], "saw": [6, 15], "how": [6, 7, 8, 10, 11, 15, 17, 23, 28, 31, 46, 48, 71, 77], "work": [6, 7, 8, 12, 15, 17, 20, 27, 33, 39, 45, 50, 71, 76, 77, 79], "condit": [6, 8, 9, 12, 14, 15, 21, 23, 27, 30, 32, 38, 39, 43, 46, 48, 57, 62, 66, 74, 77, 78], "posterior": [6, 20, 37], "And": [6, 9, 15, 30, 50, 53], "But": [6, 7, 9, 12, 37, 50], "exponenti": [6, 7, 9, 44], "cardin": [6, 8, 16, 24, 25, 31, 35, 43, 44, 48, 49, 51, 52, 53, 54, 56, 59, 60, 68], "high": [6, 7, 8, 15, 23, 25, 32, 34, 38, 39, 43, 44, 48, 50, 55, 59, 60, 61, 63, 79, 80], "becom": [6, 15, 20, 50], "difficult": [6, 9, 15, 23, 46], "becaus": [6, 7, 8, 9, 10, 14, 15, 17, 28], "limit": [6, 44, 56, 74, 77], "proababilist": 6, "compactli": [6, 14], "exploit": [6, 8, 9], "effici": [6, 7, 12, 14, 20, 33, 51, 57], "character": [6, 14, 21], "graph": [6, 7, 8, 9, 10, 16, 20, 21, 25, 28, 35, 47, 48, 50, 52, 54, 55, 57, 63, 65, 76, 77, 78, 79, 80], "structur": [6, 9, 10, 14, 15, 21, 23, 28, 35, 37, 45, 46, 47, 50, 58, 63, 66, 76, 78, 79, 80], "direct": [6, 7, 9, 16, 17, 21, 23, 46, 48, 50, 57, 76, 77, 79], "abov": [6, 7, 9, 12, 14, 15, 17, 35, 43, 50, 63, 68, 74], "filenam": [6, 43, 48, 57, 65, 67, 68, 69, 71], "iris_bn": 6, "l": [6, 9, 12, 15, 16, 19, 25, 31, 50, 79], "store": [6, 9, 43, 48, 50, 54, 57, 65, 68], "45": [6, 9, 15, 19, 31, 35, 43], "total": [6, 7, 8, 15, 23, 35, 50, 57], "53": [6, 16], "complet": [6, 7, 9, 10, 12, 15, 17, 21, 28, 50, 53, 57, 77, 79], "parameter": [6, 9, 23, 30, 46, 48, 78], "bigger": 6, "help": [6, 8, 9, 16, 71], "save": [6, 9, 12, 48, 63], "space": [6, 7, 8, 14, 15, 17, 32, 48, 53, 77, 78], "shown": [6, 8, 9, 17, 30, 32, 63, 68], "below": [6, 17, 24, 30, 32, 33, 50, 63, 71], "13": [6, 7, 8, 14, 15, 28, 32, 35, 43], "requir": [6, 8, 10, 14, 15, 16, 17, 23, 28, 44, 46, 50, 57, 62], "mainli": [6, 12], "consist": [6, 7, 10, 15, 16, 28, 48, 50, 53, 54, 57], "cpd": [6, 7, 8, 9, 16, 27, 31, 32, 34, 36, 37, 41, 43, 48, 50, 55, 59, 60, 61, 65, 67, 68, 69], "where": [6, 7, 8, 9, 14, 15, 21, 25, 32, 38, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 62, 67, 71, 76, 77, 78, 79, 80], "much": [6, 7, 8, 9, 12, 14, 48, 77], "agre": 6, "notebook": [7, 10, 12, 15, 27, 28, 33, 34, 35, 39, 40, 41, 45, 68], "econom": 7, "encod": [7, 9, 11, 66, 68, 69], "section": [7, 9, 17, 24, 44, 61, 77, 79], "obtain": [7, 8, 14, 15, 32, 50, 74, 79], "split": [7, 15], "captur": [7, 8], "individu": [7, 9], "aim": [7, 8], "illustr": 7, "done": [7, 8, 15, 17, 23, 44, 46, 49, 52, 62, 79], "librari": [7, 8, 10, 16, 28, 50, 71], "fulli": [7, 15, 38, 48, 79], "bic": [7, 23, 39, 46], "bdeu": [7, 8, 23, 34, 39, 46, 59], "k2": [7, 23, 39, 46, 59], "exhaust": [7, 24, 39, 45, 50, 75], "hill": [7, 45, 75, 78], "climb": [7, 45, 75, 78], "tabu": 7, "pc": [7, 45, 75, 78], "mmhc": [7, 75], "suppos": [7, 16, 37], "fruit": 7, "banana": 7, "appl": [7, 66], "tasti": 7, "ye": [7, 16, 33, 43, 45, 48], "larg": [7, 9, 15, 33], "small": [7, 8, 15, 21, 48, 59, 60, 61, 71], "know": [7, 9, 12, 15, 16, 37, 71], "relat": [7, 8, 10, 15, 28, 57, 71, 80], "bayesianmodel": [7, 8, 9, 10, 14, 16, 28, 31], "home": [7, 15, 28], "pgmpy_notebook": [7, 45], "futurewarn": [7, 10, 28, 32], "been": [7, 9, 10, 21, 28, 37, 48, 49, 50, 51, 54], "renam": [7, 28], "futur": [7, 10, 14, 15, 17, 28, 32], "warn": [7, 9, 15, 28, 38, 43, 50], "To": [7, 8, 10, 14, 15, 16, 17, 50, 63], "sens": [7, 50], "often": [7, 10, 28, 32, 68], "occur": [7, 17], "condition": [7, 8, 27, 43, 78, 79], "configur": [7, 8, 10, 17, 28, 77], "parameterestim": 7, "pe": 7, "state_count": 7, "uncondit": [7, 78], "were": [7, 10, 28, 32, 77, 79], "while": [7, 10, 14, 17, 28, 50, 79], "wa": [7, 17, 48], "natur": 7, "simpli": [7, 17, 50], "rel": [7, 8, 17, 21], "frequenc": [7, 8, 79], "among": [7, 8, 15, 57, 77], "14": [7, 8, 10, 14, 28, 34, 35, 43, 61, 80], "might": [7, 9, 12, 14, 15, 17, 33, 48, 59, 60, 61, 77, 79], "guess": 7, "50": [7, 8, 15, 39], "mle": [7, 8, 32, 34, 35, 50, 60, 61], "fill": [7, 25], "text": [7, 8, 17, 35, 66, 69], "maxim": [7, 34, 43, 45, 48, 51, 54, 58, 76], "achiev": 7, "17": [7, 8, 14, 35, 43], "introduct": 7, "ml": [7, 61, 62], "maximumlikelihoodestim": [7, 8, 34, 48, 55, 59, 61], "estimate_cpd": [7, 34, 59, 61], "divid": [7, 14, 15, 43], "cell": [7, 8, 10, 48, 60, 61, 76, 77, 78, 79], "get_paramet": [7, 34, 35, 48, 59, 60, 61, 66], "built": [7, 17], "conveni": 7, "calibr": [7, 19], "veri": [7, 8, 9, 12, 17, 23, 31, 37, 46, 71], "straightforward": [7, 50], "overfit": [7, 8, 77], "833": 7, "out": [7, 10, 15, 17, 28, 35, 43, 50, 65, 69, 74], "fine": 7, "happen": [7, 32, 50], "hardli": 7, "certain": [7, 14, 35, 50], "aren": [7, 23, 46], "enough": [7, 8, 15], "reli": [7, 8], "underli": [7, 50, 78, 79], "extremli": 7, "far": 7, "off": [7, 10, 28, 35, 71], "lack": [7, 8, 71], "frequent": 7, "even": [7, 8, 9, 15, 17, 50, 79], "fact": [7, 8], "caus": [7, 8, 9, 21], "immens": [7, 8], "fragment": [7, 8], "1000": [7, 15, 21, 24, 25, 34, 48, 50, 55, 59, 60, 61, 62, 79, 80], "fragil": 7, "unstabl": 7, "mitig": 7, "prior": [7, 8, 34, 48, 59, 77], "express": [7, 8, 17, 50, 74], "belief": [7, 9, 18, 21, 22, 33, 45, 66, 68], "befor": [7, 15, 48, 50, 51, 71], "those": [7, 8, 9, 17, 38, 50, 77], "updat": [7, 8, 10, 15, 24, 48, 50, 51, 52, 62], "One": [7, 9, 14, 15, 17, 48, 51, 54], "think": [7, 33], "pseudo": [7, 8, 34, 77], "unless": [7, 44, 50, 71], "commonli": [7, 9, 60, 79], "choos": [7, 15, 37], "uniform": [7, 8, 15, 16, 20, 34, 51, 59, 77, 79], "deem": 7, "equiprob": 7, "everi": [7, 14, 21, 23, 33, 35, 46, 50, 53, 59, 71, 79], "somewhat": 7, "sensibl": [7, 8], "choic": [7, 8, 15, 37, 38, 40, 41, 50], "dirichlet": [7, 8, 34, 40, 41, 48, 59, 77], "bayesianestim": [7, 8, 34, 40, 41, 48, 59], "est": [7, 39, 40, 41, 76, 77, 78, 79, 80], "prior_typ": [7, 8, 34, 40, 41, 48, 59], "equivalent_sample_s": [7, 8, 34, 48, 59, 77], "34615384615384615": 7, "6428571428571429": 7, "6538461538461539": 7, "35714285714285715": 7, "conserv": [7, 8], "particular": [7, 8, 10, 14, 28, 50, 53, 74], "around": [7, 17], "64": [7, 8, 16, 57], "mean": [7, 14, 15, 17, 23, 24, 35, 46, 65, 80], "here": [7, 8, 9, 14, 15, 38, 40, 41, 49, 50, 52, 71], "too": [7, 17, 33], "via": [7, 9, 21, 32, 50, 55], "full": [7, 15, 43, 50, 57], "randint": [7, 21, 25, 48, 50, 55, 59, 60, 61, 76, 77, 78, 79, 80], "low": [7, 21, 23, 25, 34, 38, 39, 43, 44, 46, 48, 50, 55, 59, 60, 61, 80], "5000": [7, 29, 61, 76, 77, 78, 79], "get_cpd": [7, 8, 9, 16, 27, 30, 33, 34, 37, 40, 41, 43, 48, 50, 55, 65], "511788": 7, "488212": 7, "49199687682998244": 7, "5002046245140168": 7, "5080031231700176": 7, "49979537548598324": 7, "4882005899705015": 7, "5085907138474126": 7, "5117994100294986": 7, "49140928615258744": 7, "5120845921450151": 7, "48414271555996036": 7, "4879154078549849": 7, "5158572844400396": 7, "broad": 7, "combin": [7, 10, 28, 32, 33, 35, 38, 39, 43, 46, 50], "further": [7, 15, 17], "improv": [7, 60, 77], "briefli": 7, "discuss": [7, 9, 14], "give": [7, 9, 10, 15, 16, 17, 23, 46, 50, 76, 77, 79], "constru": 7, "optim": [7, 9, 25, 60, 62, 76, 77], "It": [7, 8, 14, 16, 17, 20, 31, 44, 49, 50, 54, 57], "block": [7, 21], "s_d": 7, "colon": 7, "mathbb": 7, "r": [7, 10, 15, 19, 28, 31, 32, 41, 43, 79], "numer": [7, 15, 50, 59], "well": [7, 8, 10, 14, 23, 28, 38, 46, 50, 51, 77, 79], "travers": 7, "measur": [7, 8, 10, 23, 28, 46, 57, 77], "inform": [7, 10, 28, 43, 49, 50, 51, 66, 67, 77, 79, 80], "criterion": [7, 21, 77], "mdl": [7, 77], "18": [7, 14, 15, 21, 35, 39, 43, 53, 77, 79], "As": [7, 8, 15], "bdeuscor": [7, 23, 46, 76, 77, 78], "k2score": [7, 23, 39, 46, 76, 77], "bicscor": [7, 23, 46, 76, 77], "xy": 7, "model1": 7, "model2": 7, "13938": 7, "353002020234": 7, "14329": 7, "194269073454": 7, "14294": 7, "390420213556": 7, "20906": 7, "432489257266": 7, "20933": 7, "26023936978": 7, "20950": 7, "47339067585": 7, "vari": [7, 15], "slightli": [7, 50], "correct": [7, 27, 35, 37, 50, 79], "importantli": [7, 8], "decompos": [7, 61, 76, 77], "potenti": [7, 10, 15, 16, 28, 35, 49, 51, 52, 54, 61, 77, 79], "part": [7, 8, 9, 50, 79], "local_scor": [7, 77], "9282": 7, "88160824462": 7, "6993": 7, "603560250576": 7, "57": [7, 16], "1217389219957": 7, "super": [7, 35], "maxima": 7, "properti": [7, 8, 16, 23, 46, 48, 49, 50, 51, 52, 54, 65, 68, 69], "intract": [7, 15], "prohibit": 7, "alwai": [7, 14, 71, 77, 79], "thu": [7, 8, 12, 14, 15], "identifii": 7, "ideal": 7, "tractabl": 7, "despit": 7, "bad": [7, 9, 66], "heurist": [7, 8, 33, 54, 77], "yield": [7, 15, 50, 76, 79], "good": [7, 8, 9, 10, 12, 15, 28, 39, 66, 71, 79], "few": [7, 9, 10, 14, 16, 17, 28, 30, 63], "involv": [7, 12, 14, 30, 44, 60], "read": [7, 32, 39, 48, 50, 65, 69, 79], "exhaustivesearch": [7, 39, 76], "best": [7, 14, 24, 34, 71, 76, 80], "scoring_method": [7, 23, 39, 46, 76, 77, 78], "best_model": [7, 76, 77], "nall": 7, "revers": [7, 8, 50, 77, 78], "all_scor": [7, 76], "39": [7, 8, 9, 10, 14, 16, 27, 28, 30, 32, 33, 34, 35], "14330": 7, "086974085189": 7, "08697408519": 7, "16586": 7, "926723773093": 7, "16587": 7, "66791728165": 7, "18657": 7, "937087116316": 7, "20914": 7, "776836804216": 7, "20915": 7, "518030312778": 7, "20951": 7, "21458418441": 7, "23172": 7, "357780000675": 7, "23208": 7, "05433387231": 7, "onc": [7, 24, 50, 53], "switch": [7, 37, 71], "hillclimbsearch": [7, 39, 77], "implement": [7, 8, 10, 14, 15, 16, 22, 25, 28, 31, 33, 38, 39, 44, 45, 56, 57, 61, 71, 77, 78, 79], "greedi": [7, 25], "disconnect": [7, 34, 38, 77], "proce": [7, 77], "manipul": [7, 16, 71], "increas": [7, 8, 9, 15, 16, 68], "termin": 7, "2500": [7, 43, 67, 78], "abcdefgh": 7, "h": [7, 14, 15, 25, 37, 44, 48, 50, 51, 54, 77, 79], "hc": 7, "correctli": [7, 9, 17, 30], "identifi": [7, 10, 21, 28, 50, 71, 79], "influnc": 7, "through": [7, 8, 10, 17, 28, 43, 50, 51, 57, 71, 73, 76], "cours": [7, 9, 15], "enforc": [7, 61, 77, 78], "wider": [7, 8, 77, 78], "enhanc": 7, "keep": [7, 15, 50, 65, 67], "track": [7, 32], "last": [7, 8, 10, 28, 60, 77, 78], "modfic": 7, "regardless": [7, 8, 59], "addition": 7, "white_list": [7, 77], "black_list": [7, 77], "suppli": [7, 76, 77], "restrict": [7, 14, 57, 74, 77], "subset": [7, 8, 24, 48, 49, 51, 54], "exclud": [7, 35, 77], "max_indegre": [7, 39, 77], "quit": [7, 9, 33], "hypothesi": [7, 78, 79], "chi2": [7, 79], "citest": [7, 46, 79], "chi_squar": [7, 23, 46, 79], "significance_level": [7, 23, 46, 78, 79], "With": [7, 15], "hand": [7, 15, 32], "three": [7, 17, 35, 37], "step": [7, 14, 15, 30, 44, 77], "estimate_skeleton": [7, 78, 79], "orient": [7, 78, 79], "compel": 7, "partial": [7, 15, 45, 53, 79], "acyclid": 7, "pdag": [7, 79], "skeleton_to_pdag": [7, 79], "extend": [7, 8, 50], "remain": [7, 49, 50, 51, 54], "pdag_to_dag": 7, "550": [7, 79], "directedgraph": [7, 57], "mai": [7, 10, 17, 28, 50, 54, 79], "indic": [7, 8, 43, 48, 53, 57, 60, 61, 76, 77, 78], "determin": [7, 8, 15, 23, 32, 46, 48], "skel": [7, 78], "seperating_set": [7, 78], "build_skeleton": [7, 79], "01": [7, 9, 15, 16, 33, 34, 43, 48, 50, 65, 69, 78, 79], "shorthand": [7, 59], "guarante": [7, 14, 50], "under": [7, 8, 9, 14, 23, 79], "assumpt": [7, 8, 50], "faith": [7, 46, 79], "exactli": 7, "spuriou": 7, "violat": 7, "doe": [7, 8, 20, 46, 48, 50, 53, 79], "introduc": [7, 10, 28, 71], "issu": [7, 8, 17], "mmpc": [7, 78], "15": [7, 8, 14, 20, 28, 35, 40, 41, 43, 53, 65, 69], "mmhcestim": [7, 78], "tabu_length": [7, 77, 78], "to_direct": [7, 50], "overview": 7, "docstr": [7, 57], "satisfactorili": 7, "non": [7, 8, 9, 17, 29, 32, 43, 49, 57, 73, 79], "trivial": [7, 10, 28], "real": [7, 8, 15], "feel": [7, 15, 32, 71], "free": [7, 32, 71, 74], "drop": [7, 8, 21, 34, 48], "email": 7, "mail": [7, 71], "open": [7, 8, 10, 17, 28, 37, 63, 71], "github": [7, 8, 10, 17, 33, 45, 63, 67, 73], "put": [7, 17, 37, 71], "your": [7, 10, 15, 17, 28, 31, 37, 45, 50, 71], "2009": [7, 77, 79], "neapolitan": [7, 68, 79], "2003": [7, 65], "tsamardino": [7, 78], "et": [7, 17, 21, 24, 78, 79], "al": [7, 17, 21, 24, 78, 79], "max": [7, 8, 19, 24, 25, 45, 78], "min": [7, 8, 15, 35, 45, 78], "bn": [7, 30, 40, 41, 78, 79], "2005": [7, 78], "603ced8b35c84315938aa24428be3381": [], "nowadai": 8, "establish": 8, "global": [8, 9], "warm": [8, 15], "huge": 8, "inde": 8, "respons": 8, "trap": 8, "heat": 8, "atmospher": 8, "carbon": 8, "dioxid": 8, "co": [8, 15, 34, 39], "methan": 8, "ch": 8, "nitrou": 8, "oxid": 8, "o": [8, 14], "transport": 8, "industri": 8, "commerci": 8, "resident": 8, "tackl": 8, "impact": [8, 21], "emiss": 8, "almost": [8, 34], "face": 8, "estim": [8, 21, 23, 31, 32, 34, 39, 40, 41, 45, 46, 48, 50, 55, 57, 60, 75, 76, 77, 80], "analyz": 8, "annual": 8, "growth": 8, "world": [8, 17], "bank": 8, "group": 8, "wbg": 8, "variat": 8, "affect": [8, 9, 43], "paper": [8, 79], "cinar": 8, "kayakutlu": 8, "2010": [8, 62, 79], "author": [8, 45, 74], "produc": [8, 14, 79], "invest": 8, "turkei": 8, "histor": 8, "Their": 8, "me": 8, "come": [8, 20, 71], "up": [8, 10, 15, 16], "interest": [8, 9, 10, 14, 15, 28, 71], "investig": 8, "comprehens": 8, "concis": 8, "level": [8, 15, 66, 68, 69, 71, 78], "query_report": 8, "check_assert": 8, "active_trails_of": 8, "signific": [8, 78, 79], "readabl": [8, 50, 71], "format": [8, 17, 43, 48, 57, 63, 64, 67, 68, 71, 76], "whole": [8, 9, 50], "code": [8, 10, 12, 50], "avail": [8, 15, 21, 23, 45, 46, 48, 49, 50, 51], "fossil": 8, "fuel": 8, "diffus": 8, "wherea": [8, 51, 54], "renew": 8, "lead": [8, 9, 17], "reduct": [8, 14, 50], "suggest": [8, 71], "rate": [8, 15, 44], "popul": 8, "urban": 8, "gross": 8, "domest": 8, "product": [8, 9, 12, 14, 15, 20, 24, 25, 31, 43, 51, 59], "gdp": 8, "overal": [8, 15], "nation": 8, "defin": [8, 9, 14, 15, 16, 17, 25, 27, 31, 37, 38, 43, 49, 51, 52, 53, 54, 57, 67, 77], "00b069b1d3e648d6b63572590f5b67d2": [], "term": [8, 14, 15, 30, 57, 79], "pop": 8, "urb": 8, "per": [8, 21], "capita": 8, "ec": 8, "kg": 8, "oil": 8, "ffec": 8, "ei": 8, "net": 8, "co2": 8, "metric": [8, 15, 23, 35, 39], "ton": 8, "ch4": 8, "sector": 8, "thousand": 8, "n2o": 8, "propos": [8, 15, 77], "kept": 8, "distinct": 8, "tabl": [8, 9, 14, 16, 30, 43, 62, 65, 66, 67, 69], "cpt": [8, 20, 30], "retriv": 8, "absolut": [8, 60], "henc": [8, 9, 12, 14, 27, 43, 50], "necessari": 8, "properli": [8, 51], "mark": 8, "methodologi": 8, "organ": 8, "year": [8, 45], "treat": [8, 17, 32, 50, 54, 79], "constitut": 8, "entri": 8, "sinc": [8, 9, 15, 34, 43, 50, 55, 57, 79], "continu": [8, 23, 32, 36, 44, 45, 46, 71, 79], "fix": [8, 15, 38, 43, 57, 79], "tier": 8, "order": [8, 9, 14, 17, 20, 21, 23, 33, 37, 43, 44, 49, 50, 51, 54, 59, 76, 79], "sparsiti": 8, "boundari": 8, "interv": [8, 15], "equal": [8, 34, 35, 48, 50, 59, 61, 79], "event": [8, 74], "consequ": 8, "preprocess": 8, "compat": [8, 10, 17], "signatur": [8, 23, 46], "worth": 8, "handl": 8, "spars": [8, 76], "nan": [8, 48, 57, 60, 61, 76, 77, 78, 79], "itself": [8, 15, 17, 21, 43, 48], "impli": [8, 9, 27, 46, 51, 74, 79], "deeper": 8, "side": [8, 32, 48, 51, 52, 54], "mind": 8, "newtork": [8, 9], "regard": [8, 15], "short": 8, "rang": [8, 35, 43, 44, 50], "hierarchi": 8, "process": [8, 14, 15, 48, 50, 71], "significantli": 8, "read_csv": [8, 35], "def": [8, 10, 14, 15, 28, 31, 32, 38, 39, 43, 44], "annual_growth": 8, "min_year": 8, "max_year": 8, "isnan": 8, "100": [8, 9, 15, 24, 34, 39, 40, 41, 48, 57, 60, 77, 78], "ab": [8, 23, 46, 76], "1960": 8, "2019": 8, "df_raw": 8, "csv": [8, 32, 35, 43], "df_raw_growth": 8, "iterrow": 8, "head": [8, 32, 34, 35, 38, 39], "countri": 8, "1961": 8, "1962": 8, "1963": 8, "1964": 8, "1965": 8, "2011": 8, "2012": [8, 79], "2013": [8, 74], "2014": [8, 61, 62], "2015": [8, 45, 57], "2016": [8, 17, 77, 79], "2017": [8, 21], "2018": 8, "ita": 8, "sp": 8, "grow": [8, 50], "993928": 8, "668383": 8, "676623": 8, "729553": 8, "822624": 8, "842109": 8, "307591": 8, "171978": 8, "269541": 8, "159251": 8, "917504": 8, "096376": 8, "169884": 8, "149861": 8, "190064": 8, "836401": 8, "498807": 8, "506833": 8, "551287": 8, "636027": 8, "642485": 8, "480439": 8, "343066": 8, "619579": 8, "587835": 8, "341371": 8, "325701": 8, "246127": 8, "262999": 8, "228198": 8, "ny": [8, 62], "pcap": 8, "kd": 8, "zg": 8, "486419": 8, "487478": 8, "842052": 8, "955533": 8, "402046": 8, "400915": 8, "534287": 8, "242060": 8, "972404": 8, "917814": 8, "875477": 8, "451875": 8, "868715": 8, "966058": 8, "eg": [8, 24, 79], "oe": 8, "062200": 8, "064053": 8, "188621": 8, "110076": 8, "753922": 8, "113919": 8, "486796": 8, "211107": 8, "791839": 8, "396212": 8, "786129": 8, "comm": 8, "fo": 8, "344018": 8, "933224": 8, "167728": 8, "075163": 8, "074481": 8, "262284": 8, "193760": 8, "679745": 8, "721392": 8, "723158": 8, "733165": 8, "df_growth": 8, "transpos": [8, 32], "99393": 8, "8364": 8, "49881": 8, "48642": 8, "0622": 8, "34402": 8, "07261": 8, "8924": 8, "50683": 8, "48748": 8, "0641": 8, "93322": 8, "75395": 8, "5887": 8, "55129": 8, "84205": 8, "1886": 8, "51943": 8, "5116": 8, "63603": 8, "95553": 8, "11008": 8, "07516": 8, "631028": 8, "78298": 8, "64248": 8, "40205": 8, "75392": 8, "0744814": 8, "33506": 8, "84845": 8, "1966": 8, "777304": 8, "56811": 8, "16416": 8, "70603": 8, "552096": 8, "51847": 8, "9005": 8, "1967": 8, "723778": 8, "50361": 8, "40568": 8, "41638": 8, "19174": 8, "938": 8, "41875": 8, "1968": [8, 80], "631737": 8, "40395": 8, "87359": 8, "46868": 8, "880322": 8, "59627": 8, "42744": 8, "1969": 8, "566059": 8, "32609": 8, "49918": 8, "89391": 8, "940778": 8, "725698": 8, "22188": 8, "tiers_num": 8, "boundary_str": 8, "2f": 8, "relabel": 8, "elif": 8, "get_boundari": 8, "prev_tier": 8, "enumer": [8, 35], "new_column": 8, "content": [8, 10, 16, 17, 53], "item": [8, 16, 35, 50], "seri": [8, 39, 45, 50, 79], "tolist": 8, "break": [8, 9, 71], "array_split": 8, "df": [8, 35, 46, 50], "99": [8, 9, 16, 17, 33, 48, 65, 69], "82": [8, 48, 57], "84": [8, 39, 48], "89": [8, 39, 48], "49": [8, 9, 15, 43], "06": [8, 32, 43], "16": [8, 14, 35, 39, 43], "34": [8, 15, 16, 24], "78": 8, "81": [8, 48], "59": [8, 9, 16], "40": [8, 9, 10, 35], "24": [8, 10, 14, 34, 43], "38": [8, 9, 10], "maximum": [8, 24, 32, 34, 45, 50, 54, 58, 60, 62, 77, 79, 80], "likelihood": [8, 23, 32, 34, 39, 45, 46, 50, 58, 60, 62, 77, 79], "former": 8, "latter": [8, 17, 79], "count": [8, 34, 50, 59, 77], "advantag": [8, 37], "guid": [8, 71], "counterbal": 8, "although": [8, 14], "seem": [8, 37, 50], "plausibl": 8, "overli": 8, "simplist": 8, "intrins": 8, "robust": 8, "choosen": 8, "distribuit": 8, "close": [8, 10, 14, 17, 28, 79], "smooth": 8, "disabl": 8, "wrap": 8, "output": [8, 14, 15, 17, 34, 44, 63, 66, 68, 69], "style": [8, 15, 17, 32, 57, 71], "div": [8, 17], "output_area": 8, "pre": 8, "white": 8, "complete_samples_onli": 8, "check_model": [8, 9, 20, 27, 30, 35, 37, 48, 49, 50, 51, 52, 54], "19": [8, 14, 37, 61, 76], "07": [8, 43, 71], "338164": 8, "323671": 8, "9435028248587572": 8, "09009009009009006": 8, "3333333333333333": [8, 59], "8198198198198197": 8, "6120943952802359": 8, "13421828908554573": 8, "05208333333333332": 8, "4858757062146893": 8, "052083333333333336": 8, "02824858757062147": 8, "09009009009009009": 8, "010857763300760043": 8, "028248587570621472": 8, "2536873156342183": 8, "7315634218289085": 8, "8958333333333333": 8, "7146892655367232": 8, "036630036630036625": 8, "09880564603691641": 8, "8958333333333335": 8, "2570621468926554": 8, "8198198198198199": 8, "63003663003663": 8, "8903365906623236": 8, "343137": 8, "328431": 8, "72": 8, "5870646766169154": 8, "09895833333333334": 8, "36318407960199006": 8, "4270833333333333": 8, "19270833333333331": 8, "04975124378109453": 8, "23958333333333331": 8, "7083333333333334": 8, "97": [8, 15, 30, 48, 65, 69], "03": [8, 30, 34, 65, 69], "2028985507246377": 8, "49612403100775193": 8, "3958333333333333": 8, "51": 8, "2868217054263566": 8, "23": [8, 10, 14, 35, 53, 76], "463768115942029": 8, "2170542635658915": 8, "20833333333333331": 8, "27": [8, 10, 14, 53], "6766169154228856": 8, "2864583333333333": 8, "2288557213930348": 8, "4739583333333333": 8, "09452736318407962": 8, "6614583333333334": 8, "20": [8, 14, 24, 35, 43, 44, 50, 80], "6991869918699187": 8, "11904761904761905": 8, "26016260162601623": 8, "6145833333333334": 8, "44047619047619047": 8, "07246376811594203": 8, "04065040650406504": 8, "31": [8, 10, 24], "5765765765765766": 8, "22424242424242424": 8, "855072463768116": 8, "6594202898550725": 8, "761904761904762": 8, "7151515151515152": 8, "2681159420289855": 8, "00": [8, 9, 15, 33, 34, 37, 39, 40, 41, 43], "0900900900900901": 8, "06060606060606061": 8, "61": [8, 9, 16], "ask": [8, 12, 15, 71], "made": 8, "get_assert": 8, "valid": [8, 21, 43, 53], "descend": [8, 9, 21], "semant": 8, "No": [8, 17, 37, 43, 45], "markov_blanket_of": 8, "bug": [8, 10, 14, 28, 71], "rais": [8, 21, 38, 49, 50], "keyerror": [8, 50], "accept": [8, 15, 34, 60, 71, 77, 78], "my": 8, "pull": [8, 10], "request": [8, 50], "com": [8, 10, 17, 20, 27, 30, 32, 33, 45, 71, 73], "1293": 8, "1294": 8, "2759": 8, "_": [8, 9, 15, 35, 50, 79], "perp": [8, 9, 54], "independenceassert": [8, 79], "field": [8, 43], "event1": [8, 43], "event2": [8, 43], "event3": [8, 43], "evalu": [8, 15, 23, 39, 50], "minimum": [8, 24, 54], "appear": [8, 43, 50], "notic": [8, 10, 28, 74], "closer": [8, 14, 24], "independent_assertions_score_funct": 8, "evidence_assertions_score_funct": 8, "assertion_dict": 8, "score_funct": 8, "tmp_score": 8, "independent_init": 8, "independent_dict": 8, "evidence_init": 8, "evidence_dict": 8, "least": [8, 21, 25, 62], "311": 8, "112": [8, 69], "2222": 8, "1179": 8, "from_vari": 8, "frozenset": [8, 10, 21, 24, 28], "elimin": [8, 15, 18, 21, 31, 33, 37, 45], "apart": [8, 15], "execut": [8, 71], "accordingli": 8, "minfil": [8, 25, 33], "due": [8, 14, 25], "minneighbor": [8, 25, 33], "neighbor": [8, 25, 50, 51, 54], "minweight": [8, 25, 33], "domain": [8, 25, 67], "weightedminfil": [8, 25, 33], "constitu": [8, 25], "vertic": [8, 25], "dedic": 8, "experi": 8, "variableelimin": [8, 9, 25, 29, 31, 33, 37], "elimination_ord": [8, 25, 33], "desc": 8, "start_tim": 8, "4f": 8, "get_ord": 8, "_get_elimination_ord": 8, "sep": 8, "pad": 8, "ljust": 8, "compare_all_ord": 8, "ord_dict": 8, "precomput": 8, "dummi": [8, 25], "ev": 8, "0022": 8, "3431": 8, "3284": 8, "0196": 8, "1300": 8, "4721": 8, "3765": 8, "1514": 8, "0237": 8, "0302": 8, "question": [8, 12, 15, 32, 37, 71], "scenario": 8, "consider": 8, "3087": 8, "3011": 8, "3902": 8, "0331": 8, "3704": 8, "4008": 8, "2288": 8, "0276": 8, "3793": 8, "3965": 8, "2242": 8, "0253": 8, "3570": 8, "4021": 8, "2409": 8, "0234": 8, "3044": 8, "4011": 8, "2945": 8, "0251": 8, "0320": 8, "2959": 8, "3984": 8, "3058": 8, "0295": 8, "4789": 8, "2765": 8, "2446": 8, "0279": 8, "4573": 8, "3776": 8, "1650": 8, "0219": 8, "5014": 8, "3155": 8, "1831": 8, "0198": 8, "2901": 8, "2807": 8, "4292": 8, "0220": 8, "4274": 8, "2968": 8, "2758": 8, "0223": 8, "3699": 8, "2982": 8, "3319": 8, "0209": 8, "1110": 8, "1221": 8, "1290": 8, "1141": 8, "1081": 8, "1140": 8, "1276": 8, "1037": 8, "0705": 8, "0218": 8, "6992": 8, "2602": 8, "0407": 8, "0250": 8, "7152": 8, "0606": 8, "0239": 8, "0273": 8, "outcom": [8, 21, 69], "clearli": [8, 9, 14, 15], "proport": [8, 43, 61], "symptom": 8, "casual": 8, "correl": [8, 9, 23, 32, 41, 46, 57, 79], "trend": 8, "resembl": 8, "decreas": [8, 9, 24], "unlik": [8, 15, 38], "situat": [8, 10, 14, 28], "without": [8, 9, 14, 15, 17, 29, 38, 43, 48, 50, 57, 71, 74, 78, 80], "prove": [8, 14], "lower": [8, 15, 78], "underrepres": 8, "That": 8, "balanc": [8, 15], "probabilit": 8, "realli": [8, 31], "strategi": [8, 21], "sustain": 8, "environment": 8, "protect": 8, "agenc": 8, "ga": 8, "didem": 8, "gulgun": 8, "bay": [9, 37, 77, 80], "ian": 9, "acycl": [9, 76], "statist": [9, 15, 23, 39, 46, 53, 79], "dag": [9, 21, 23, 40, 41, 46, 48, 50, 63, 66, 76, 77, 78, 79, 80], "mostli": 9, "relationship": [9, 15], "pa": 9, "student_full_param": 9, "36": [9, 10], "variable_card": [9, 29, 30, 33, 38, 43, 50], "represent": [9, 14, 22, 49, 50, 53, 57, 79], "pictur": 9, "colum": 9, "intel_0": [9, 43], "intel_1": [9, 43], "diff_0": [9, 43], "diff_1": [9, 43], "grade_0": [9, 43], "grade_1": [9, 43], "grade_2": [9, 43], "cpd_l": [9, 19, 25, 31], "cpd_": [9, 25, 29], "37": [9, 34, 38, 39], "cpd_d_sn": 9, "easi": [9, 31, 43, 48], "hard": [9, 38, 43, 48], "cpd_i_sn": 9, "dumb": 9, "intellig": [9, 12, 57, 79], "cpd_g_sn": 9, "cpd_l_sn": 9, "cpd_s_sn": 9, "These": [9, 12, 14, 17, 23, 38], "pmgpy": 9, "replac": [9, 16, 17, 50, 51], "0x7f1585d3e278": 9, "0x7f1585d3e320": 9, "0x7f1585d3e390": 9, "0x7f1585d3e2b0": 9, "0x7f1585d3e358": 9, "doesn": [9, 14, 15, 17, 23, 34, 43, 46, 50, 57], "41": [9, 10, 44], "get_cardin": [9, 43, 48, 49, 51, 54], "categor": [9, 79], "mathemat": 9, "written": [9, 15], "nondesc": 9, "variou": [9, 16, 38, 45, 48, 49, 50, 51, 52, 54, 71], "42": [9, 43], "two_nod": 9, "fairli": 9, "difficulti": 9, "rightarrow": 9, "leftarrow": [9, 15], "i_1": 9, "therefor": [9, 10, 28, 37, 50, 57], "four": [9, 15, 23, 46], "43": 9, "three_nod": 9, "flow": [9, 57], "influenc": [9, 57, 77], "won": [9, 17, 35, 71], "evidenti": 9, "similarli": [9, 31, 50], "reflect": [9, 50], "he": [9, 12, 37], "44": [9, 35], "till": [9, 48, 49, 51, 54], "proof": [9, 32], "rule": [9, 50], "probabilii": [9, 48], "machin": [9, 21, 32, 61, 77, 80], "learn": [9, 21, 22, 23, 31, 32, 45, 46, 50, 61, 62, 71, 73, 77, 78, 79, 80], "talk": [9, 12, 77], "later": [9, 14, 15, 17, 24], "tutori": [9, 45, 57, 71], "carri": 9, "computationali": 9, "expens": 9, "smaller": [9, 12], "faster": [9, 76, 77], "basic": [9, 12, 14, 16, 50], "sum_": [9, 12, 14, 32, 49, 51, 54], "sum_d": 9, "sum_i": [9, 12], "sum_l": [9, 12], "push": [9, 12, 71], "summat": [9, 12], "insid": [9, 12, 50], "52": [9, 16, 34], "g_dist": 9, "1210": 9, "13it": [9, 39], "240": 9, "56it": 9, "3620": 9, "2884": 9, "3496": 9, "extra": [9, 57, 62], "58": [9, 16], "552": 9, "57it": 9, "326": 9, "68it": 9, "9000": 9, "0800": 9, "0200": 9, "similar": [9, 14, 38, 50], "probabilitii": 9, "map_queri": [9, 19, 24, 25, 33], "1073": 9, "12it": 9, "273": 9, "20it": 9, "417": 9, "30it": 9, "219": 9, "08it": [9, 34], "0it": [9, 33, 37], "though": [9, 10, 28, 50], "exact": [9, 15, 22, 24, 31, 33, 43, 45], "still": [9, 15, 33, 51], "computation": 9, "approxim": [9, 12, 14, 15, 24, 33, 45, 80], "messag": [9, 18, 24, 50, 51, 71], "etc": [9, 15, 16, 49, 50, 79], "develop": [10, 15, 28, 71], "re": [10, 28, 35, 37, 50, 71], "walk": [10, 15, 28], "intuit": [10, 28], "backdoor": [10, 21, 28], "path": [10, 15, 21, 28, 32, 48, 57, 65, 66, 67, 68, 69], "book": [10, 28, 71, 79], "why": [10, 14, 28], "peal": [10, 28], "test": [10, 16, 21, 28, 39, 50, 68, 78], "adjust": [10, 21, 28, 45, 50, 79], "unit": [10, 15, 28], "resourc": [10, 28], "understand": [10, 15, 28], "causalinfer": [10, 21, 28, 29], "goal": [10, 28], "deconfound": [10, 28], "denot": [10, 28, 49, 50, 54], "ll": [10, 17, 21, 28, 71], "familiar": [10, 28], "concept": [10, 12, 15, 28], "expand": [10, 28], "portion": [10, 15, 28, 74], "21": [10, 14, 15, 35, 43], "titl": [10, 15, 16, 28, 35, 45], "clone": [10, 71], "repo": 10, "instal": [10, 15, 17, 28, 70], "markdown": [10, 28], "dev": [10, 33, 45, 71, 73], "pretti": 10, "environ": [10, 15, 17], "interact": [10, 51, 80], "causalmodel": 10, "ve": [10, 21, 25], "kernel": [10, 53], "sh": 10, "git": [10, 73], "mrklee": 10, "mv": [10, 15], "pgmpydev": 10, "cd": 10, "checkout": [10, 37, 71], "abl": [10, 77], "date": 10, "packag": [10, 15, 17, 32, 63], "forc": [10, 57], "downgrad": 10, "aris": [10, 74], "pip": [10, 73], "txt": [10, 17, 67], "usr": 10, "lib": [10, 15, 32], "python3": [10, 15, 32, 71], "dist": 10, "statsmodel": [10, 21, 73], "56": [10, 16, 54], "datetool": 10, "deprec": [10, 15, 32], "tseri": 10, "branch": [10, 73], "origin": [10, 15, 43, 50, 71, 79], "c459420": 10, "95af23b": 10, "fast": [10, 79], "forward": [10, 15, 22, 23, 46], "causal_infer": 10, "test_infer": 10, "test_causal_infer": 10, "file": [10, 15, 43, 48, 57, 63, 65, 66, 67, 68, 69, 71, 74], "insert": [10, 32, 50], "delet": [10, 17, 54, 56], "fatal": 10, "destin": 10, "directori": [10, 17], "cannot": [10, 14, 28, 50, 77, 78], "22": [10, 14, 35, 43], "load_ext": 10, "autoreload": 10, "sy": [10, 28, 32, 35], "pip3": [10, 27, 28], "convert_pgm_to_pgmpi": [10, 28], "convert": [10, 14, 16, 17, 28, 48, 51, 54, 57, 60, 61, 63, 65, 69, 76, 77, 78, 79], "_edg": [10, 28], "extens": [10, 15, 17, 45, 80], "load": [10, 21, 27, 48, 57], "reload": 10, "reload_ext": 10, "statistician": [10, 28], "control": [10, 17, 28, 50, 71], "imped": [10, 28], "effort": [10, 28], "arrow": [10, 21, 28], "confound": [10, 28], "confirm": [10, 28], "game1": [10, 21, 28], "inference1": [10, 28], "_has_active_backdoor": 10, "adj_set": [10, 28], "get_all_backdoor_adjustment_set": [10, 21, 28], "what": [10, 12, 14, 15, 28, 32, 37, 50, 71], "harder": [10, 28], "actuali": [10, 28], "goe": [10, 28, 37], "collid": [10, 28], "action": [10, 28, 57, 66, 74], "pattern": [10, 28, 67, 79], "clearest": [10, 28], "sign": [10, 17, 28], "28": [10, 14, 34, 79], "29": [10, 53, 80], "bia": [10, 28], "practic": [10, 15, 28, 79], "howev": [10, 17, 28, 50], "complex": [10, 15, 28, 77], "go": [10, 28, 37, 50, 57, 71], "astut": [10, 28], "nice": [10, 17, 28], "32": [10, 35, 43, 48], "longer": [10, 15, 28, 43], "drawn": [10, 15, 28, 32], "induc": [10, 25, 28, 50], "80": [10, 28, 39, 48, 79], "kind": [10, 15, 17, 28, 32, 74], "turn": [10, 28, 71], "plu": [10, 28], "bd_adj_set": [10, 28], "fd_adj_set": [10, 28], "get_all_frontdoor_adjustment_set": [10, 21, 28], "ehat": [10, 28], "front": [10, 21, 28], "door": [10, 21, 28, 37], "taken": [10, 28, 48, 50, 60, 61, 76, 77, 78], "unobserv": [10, 20, 28, 48], "therfor": [10, 28], "independenci": 11, "deal": [12, 33, 74], "main": [12, 15, 31, 34, 39, 66, 71], "categori": 12, "avoid": [12, 15, 17, 48, 50, 57, 71, 77], "thing": 12, "clear": [12, 15, 50], "sum_g": 12, "posit": [14, 15, 23, 46, 50, 65, 66, 69], "veloc": [14, 15], "temperatur": [14, 15, 76], "pressur": 14, "noth": [14, 25, 32, 55], "formul": 14, "attent": 14, "y_1": 14, "y_2": 14, "cdot": [14, 15], "y_n": 14, "val": [14, 43, 48], "continuum": 14, "implicit": 14, "machineri": 14, "behav": [14, 50], "deriv": [14, 15, 24], "pdf": [14, 15, 22, 32, 44, 56, 61, 63, 77, 78, 79], "scipi": [14, 32, 44, 45, 73], "special": [14, 17, 48, 55, 79], "beta": [14, 32], "drichlet": 14, "ditribut": 14, "drichlet_pdf": 14, "power": [14, 15, 39, 50, 79], "continuousfactor": [14, 44], "drichlet_factor": 14, "scope": [14, 35, 43, 49, 51, 54, 67], "226800": 14, "caveat": 14, "ineffici": 14, "resort": 14, "custom_pdf": 14, "custom_factor": 14, "stat": [14, 32, 44], "multivariate_norm": [14, 32], "std_normal_pdf": [14, 44], "lambda": [14, 35, 44, 79], "std_normal": [14, 44], "x1": [14, 21, 24, 32, 43, 54, 56, 57], "x2": [14, 21, 24, 32, 43, 54, 56, 57], "058549831524319168": 14, "24197072451914328": 14, "sn_pdf1": 14, "sn_pdf2": 14, "sn1": 14, "sn2": 14, "sn3": 14, "sn4": 14, "063493635934240983": 14, "3989422804014327": 14, "mass": [14, 15, 44, 51], "upon": [14, 15], "inbuilt": 14, "multivari": [14, 15, 79], "user": [14, 15, 32, 35, 38, 50, 63, 69], "own": [14, 15, 17, 50], "subclass": [14, 44, 50, 76], "basediscret": [14, 44], "x_1": [14, 21], "x_n": 14, "dimension": [14, 15, 23, 79], "mu": [14, 15, 32, 36], "symmetr": 14, "covari": [14, 15, 21, 57, 62, 79], "matrix": [14, 32, 53, 57], "sigma": [14, 15, 32, 36, 62], "densiti": [14, 15, 23, 35, 44], "dfrac": 14, "pi": [14, 17, 32, 44], "exp": [14, 15, 32, 44], "jointgaussiandistribut": 14, "inial": 14, "comut": 14, "gaussiandistribut": [14, 15], "jgd": [14, 15], "di": 14, "x3": [14, 24, 43, 54, 56], "0014805631279234139": 14, "overrid": 14, "invers": 14, "mathcal": [14, 32, 49], "repect": 14, "dis1": 14, "dis2": 14, "x4": [14, 24, 43, 54, 56], "dis3": 14, "fashion": 14, "reveal": 14, "mention": 14, "intermedi": 14, "costli": 14, "parametr": [14, 40, 41, 76, 77, 80], "divis": [14, 43], "moreov": 14, "integr": [14, 24, 43, 71], "finit": 14, "analyt": 14, "solut": [14, 15, 24], "5x": 14, "tkx": 14, "tx": 14, "rewrit": 14, "log": [14, 15, 23, 32, 38, 39, 46, 62, 77, 79], "jointgaussaindistribut": 14, "canonicalfactor": 14, "api": [14, 33, 57, 79], "canonicaldistribut": 14, "phi1": [14, 20, 43, 49, 51, 52], "phi2": [14, 20, 43, 49, 51, 52], "phi3": [14, 20, 49], "to_joint_gaussian": 14, "canonci": 14, "back": [14, 15, 21, 34, 35, 40, 41, 43], "375": 14, "875": 14, "linearli": 14, "varianc": [14, 15, 57], "x_2": [14, 21], "x_3": 14, "beta_1": 14, "beta_2": 14, "beta_3": 14, "beta_0": [14, 32], "x_k": 14, "mu_i": 14, "2_y": 14, "cov": [14, 32, 57], "x_i": [14, 15, 32], "j": [14, 19, 20, 25, 31, 35, 49, 53, 57, 77], "beta_j": 14, "sigma_": 14, "jointli": [14, 32], "Then": 14, "lineargaussiancpd": [14, 32, 36], "instanti": [14, 53], "coeffici": [14, 32, 79], "beta_vector": [14, 36], "2x1": 14, "3x2": 14, "7x3": 14, "altern": [14, 17], "representaion": 14, "lineargaussianbayesiannetwork": 14, "jointguassiandistribut": 14, "cpd1": 14, "cpd2": 14, "cpd3": 14, "hack": [14, 71], "attribut": [14, 16, 17, 30, 48, 50, 57, 68], "quickli": [15, 30, 31], "coher": 15, "converg": [15, 53, 60], "hmc": 15, "mcmc": 15, "throughout": 15, "system": [15, 32, 71], "locat": 15, "momentum": 15, "energi": 15, "kinet": 15, "constant": [15, 50, 54], "frac": [15, 17, 37], "dx_i": 15, "dt": 15, "p_i": 15, "dp_i": 15, "t_0": 15, "durat": 15, "motion": 15, "epsilon": [15, 57, 77], "compon": [15, 54], "better": [15, 23, 46, 71], "half": 15, "imagin": 15, "attach": 15, "equilibrium": 15, "stretch": 15, "distanc": 15, "horizont": 15, "x_0": [15, 17], "mg": 15, "delta": [15, 17, 57], "height": [15, 32], "graviti": 15, "earth": 15, "trigonometri": 15, "mgl": 15, "sin": 15, "2m": 15, "mglx": 15, "sqrt": [15, 17, 32, 44], "anim": 15, "sub": [15, 17], "upper": 15, "demonstr": 15, "black": 15, "phase": 15, "ellips": 15, "deviat": 15, "particl": 15, "trace": [15, 79], "diverg": [15, 39, 79], "slowli": 15, "toward": [15, 24], "infin": 15, "determinist": 15, "trajectori": 15, "metropoli": 15, "hast": 15, "target": [15, 17, 21], "mechan": 15, "partit": [15, 49, 51, 54], "write": [15, 17, 31, 48, 65, 66, 67, 68, 69, 71], "furthermor": 15, "conclud": 15, "zero": [15, 34, 35, 38, 39, 50, 57], "busi": 15, "stepsiz": 15, "repeat": 15, "until": [15, 17, 77], "p_0": 15, "x_m": 15, "x_": 15, "leq": 15, "p_m": 15, "sometim": [15, 50], "explicitli": [15, 49, 52, 57], "hamiltonianmc": 15, "disrtibut": 15, "qquad": 15, "begin": [15, 17], "cc": 15, "gradlogpdfgaussian": 15, "77777": 15, "grad_log_pdf": 15, "simulate_dynam": 15, "initial_po": 15, "num_sampl": 15, "trajectory_length": 15, "figur": [15, 17, 32, 35], "figsiz": [15, 35], "hold": [15, 46, 48, 50, 54], "color": [15, 35, 50], "legend": [15, 35], "utgup": 15, "anaconda3": 15, "site": [15, 32], "ipykernel": 15, "__main__": 15, "matplotlibdeprecationwarn": 15, "long": 15, "command": [15, 50, 73], "element": [15, 20, 66, 68, 69], "ax": [15, 29, 35], "__init__": 15, "917": 15, "userwarn": 15, "matplotlibrc": 15, "msg_depr_set": 15, "rcsetup": 15, "152": [15, 16, 34], "rest": [15, 50], "critic": 15, "tune": 15, "variant": [15, 39, 45, 50, 79], "adapt": [15, 22], "dure": [15, 38, 50, 57, 76, 77, 78], "hamiltonianmcda": 15, "plug": 15, "hmcda": 15, "modifiedeul": 15, "sampler_da": 15, "num_adapt": 15, "naccept": 15, "acceptance_r": 15, "000000e": 15, "000000": [15, 32, 46], "458460e": 15, "323": 15, "614684e": 15, "780326": 15, "316832e": 15, "643645": 15, "111247e": 15, "306480": 15, "163398e": 15, "357304": 15, "py3": [15, 32], "egg": [15, 32], "111": 15, "runtimewarn": 15, "encount": [15, 50], "double_scalar": 15, "acceptance_prob": 15, "env": 15, "recarri": 15, "record": 15, "basesimulatehamiltoniandynam": 15, "modifiedeulermethod": 15, "grad_log_posit": 15, "new_posit": 15, "new_momentum": 15, "new_grad_logp": 15, "_get_proposed_valu": 15, "grad_log": 15, "get_gradient_log_pdf": 15, "hmc_sampler": 15, "accepted_propos": 15, "624716": 15, "680638": 15, "928227": 15, "143031": 15, "234847": 15, "118653": 15, "633648": 15, "977647": 15, "282438": 15, "442565": 15, "734446": 15, "282935": 15, "552439": 15, "300669": 15, "729025": 15, "793016": 15, "489195": 15, "430182": 15, "consum": 15, "especi": [15, 17], "nut": 15, "ran": 15, "At": [15, 27], "backward": [15, 22], "fictiti": 15, "doubl": [15, 24], "binari": 15, "leaf": [15, 20, 27], "halt": 15, "leftmost": 15, "rightmost": [15, 68], "subtre": 15, "fiction": 15, "stop": [15, 20, 24], "preserv": [15, 49], "nouturnsampl": 15, "nuts_sampl": 15, "mpl_toolkit": [15, 32], "mplot3d": [15, 32], "axes3d": [15, 32], "fig": [15, 35], "period": [15, 50], "130": 15, "invalid": 15, "true_divid": 15, "rand": [15, 24, 25, 43, 49, 51, 52, 54], "candidate_set_size2": 15, "candidate_set_s": 15, "burn": 15, "amount": 15, "reach": [15, 20, 60, 77], "stationari": [15, 53], "usual": [15, 50], "thrown": 15, "awai": [15, 35], "don": [15, 17, 50, 71], "characterist": 15, "dimens": [15, 20], "linewidth": 15, "kernelapp": 15, "app": 15, "nutsda": 15, "nouturnsamplerda": 15, "nutsda_sampl": 15, "457420": 15, "500307": 15, "211056": 15, "822813": 15, "537422": 15, "005842": 15, "195423": 15, "578560": 15, "047900": 15, "522322": 15, "176574": 15, "763822": 15, "124225": 15, "655759": 15, "003954": 15, "337818": 15, "170382": 15, "146218": 15, "4574": 15, "503": 15, "211": 15, "23158312e": 15, "08966925e": 15, "47064070e": 15, "42754370e": 15, "04": [15, 33, 43, 48], "07581018e": 15, "22786641e": 15, "80037176e": 15, "20666799e": 15, "93898094e": 15, "84557224e": 15, "03691158e": 15, "05047756e": 15, "90819711e": 15, "83294495e": 15, "98059422e": 15, "22139874e": 15, "11755511e": 15, "50041160e": 15, "412": 15, "gradient": 15, "da": 15, "logisitc": 15, "logist": 15, "2e": 15, "th": [15, 54], "basegradlogpdf": 15, "customdistribut": 15, "logistic_pdf": 15, "log_logist": 15, "grad_log_logist": 15, "logistic_model": 15, "gradloglogist": 15, "variable_assign": 15, "log_pdf": 15, "_get_gradient_log_pdf": 15, "linspac": 15, "hist": [15, 35], "norm": [15, 44], "histtyp": 15, "bin": [15, 17, 35], "creation": 16, "standard": [16, 23, 46, 57, 68], "assoic": 16, "probmodelxml": 16, "pomdpx": [16, 64], "xmlbif": [16, 48, 64], "xmlbeliefnetwork": [16, 64], "uai": [16, 48, 64], "readili": 16, "probmodel": 16, "xml": [16, 66, 67, 68, 69], "55": [16, 19, 31, 39, 43], "probmodelxmlread": 16, "reader_str": 16, "pgmx": 16, "get_model": [16, 48, 65, 67, 68, 69], "accor": 16, "markovmodel": 16, "rai": 16, "bronchiti": 16, "dyspnea": 16, "visittoasia": 16, "smoker": [16, 30, 46], "lungcanc": 16, "tuberculosi": 16, "tuberculosisorcanc": 16, "98": [16, 30, 48, 57], "edges_list": 16, "role": [16, 17], "chanc": [16, 37], "finitest": 16, "568": 16, "additionalproperti": 16, "relev": [16, 50], "181": 16, "698": 16, "290": 16, "201": 16, "322": 16, "252": [16, 43], "comment": [16, 71], "indica": 16, "si": 16, "el": 16, "de": 16, "rayo": 16, "sido": 16, "positivo": 16, "321": 16, "533": 16, "238": 16, "336": 16, "421": 16, "62": 16, "pdb": 16, "set_trac": 16, "tabular_cpd": 16, "evidence_var": 16, "63": [16, 43, 57], "probmodelxmlwrit": 16, "get_probmodel_data": 16, "fileformat": 16, "writer": [16, 65, 67, 68, 69], "model_data": [16, 66], "__str__": 16, "decod": 16, "utf": [16, 66, 68, 69], "formatvers": 16, "probnet": 16, "link": [16, 48], "var1": 16, "var2": 16, "conditionalprob": 16, "additionalconstraint": 16, "decisioncriteria": 16, "write_fil": 16, "65": [16, 30, 43, 76], "reader": [16, 48, 65, 66, 67, 68, 69], "fileforamt": 16, "pars": [16, 20], "xmlbelief": 16, "66": 16, "xbnreader": [16, 68], "ex": 16, "67": 16, "fomat": 16, "set_analysisnotebook": [16, 68], "absent": [16, 68], "descript": [16, 66, 68, 71, 77], "brain": 16, "tumor": 16, "ypo": [16, 68], "11935": 16, "xpo": [16, 68], "15250": 16, "metastat": [16, 68], "cancer": [16, 30, 46, 68], "10465": [16, 68], "13495": [16, 68], "serum": [16, 68], "calcium": [16, 68], "11965": [16, 68], "11290": [16, 68], "papilledema": 16, "13240": 16, "17305": 16, "coma": 16, "12985": 16, "13960": 16, "cpd_distribut": 16, "dpi": [16, 68], "condset": [16, 68], "54": 16, "xbnwriter": [16, 68], "emphasi": 17, "boldfac": 17, "preformat": 17, "strike": 17, "strikeout": 17, "strikethrough": 17, "arbitrari": [17, 21, 50, 56], "unicod": 17, "charact": [17, 48, 71], "\u0142\u00df\u014d": 17, "browser": 17, "processor": [17, 59, 61, 65, 80], "appropri": 17, "font": 17, "dollar": 17, "math": [17, 32, 54, 57, 62, 79], "unknown": 17, "interpret": [17, 23, 32, 46], "raw": 17, "pandoc": 17, "anyth": [17, 71], "tex": 17, "immedi": 17, "digit": 17, "line": [17, 71], "limits_": 17, "infti": 17, "dx": [17, 45], "enabl": 17, "jupyt": 17, "contrib": 17, "nbextens": 17, "readthedoc": 17, "io": [17, 63, 67, 71], "readm": 17, "nbviewer": 17, "spatialaudio": 17, "nbsphinx": 17, "blob": [17, 33, 67], "master": [17, 67], "ipynb": [17, 33], "mathjax_config": 17, "conf": 17, "equationnumb": 17, "autonumb": 17, "am": [17, 66, 77], "uselabelid": 17, "uniqu": 17, "golden": 17, "eqref": 17, "parenthes": 17, "ref": 17, "within": [17, 53], "referenc": 17, "fibonacci": 17, "recurr": 17, "prefer": 17, "tag": [17, 65, 66, 68, 69], "pythagora": 17, "nbconvert": 17, "latex_cit": 17, "cite": [17, 45], "kluyver2016jupyt": 17, "kluyver": 17, "strong": 17, "perez2011python": 17, "ecosystem": 17, "takluyv": 17, "cite2c": 17, "highlight": 17, "hello": 17, "remot": 17, "inclus": 17, "sphinxcontrib": 17, "inkscapeconvert": 17, "rsvgconvert": 17, "missinglinkelectron": 17, "svg2pdfconvert": 17, "extern": 17, "inkscap": 17, "rsvg": 17, "debian": 17, "ubuntu": 17, "librsvg2": 17, "ext": 17, "imgconvert": 17, "www": [17, 20, 22, 27, 30, 33, 61, 65, 69, 71, 77, 78, 79], "usag": [17, 43, 48], "imagemagick": 17, "disadvantag": 17, "bitmap": 17, "embed": 17, "drag": 17, "edit": [17, 44], "past": [17, 32], "editor": 17, "viewer": 17, "except": [17, 25, 37, 50, 57], "prefix": 17, "stick": 17, "stickfigur": 17, "toolbar": 17, "plain": 17, "ignor": [17, 50], "html5": 17, "audio": 17, "src": [17, 32], "ogg": 17, "video": 17, "ogv": 17, "somewher": 17, "anywai": 17, "experiment": 17, "Its": 17, "commonmark": 17, "alert": 17, "reliabl": 17, "obei": 17, "guidelin": 17, "nest": [17, 66], "overus": 17, "subdirectori": 17, "orphan": 17, "subdir": 17, "mylink": 17, "subsect": 17, "rememb": [17, 71], "hyphen": 17, "btw": 17, "source_suffix": 17, "restructuredtext": 17, "anchor": 17, "slash": 17, "doubt": 17, "javascript": 17, "example_python_funct": 17, "autodoc": 17, "propag": [18, 21, 22, 33, 45], "mplp": [18, 45], "exactinfer": [19, 20, 25, 35], "beliefpropag": [19, 20, 33, 35], "junction": [19, 47, 48, 51, 54, 61], "cliqu": [19, 25, 35, 48, 49, 51, 52, 54], "junctiontre": [19, 35, 52, 61], "factorgraph": [19, 20, 51], "diff_cpd": [19, 43, 48, 50], "grade_cpd": [19, 43, 48, 50], "letter_cpd": [19, 48], "bp": [19, 21, 34, 38, 39], "get_clique_belief": 19, "after": [19, 43, 50, 62, 79], "get_cliqu": 19, "get_sepset_belief": 19, "sepset": [19, 48, 49, 51, 52, 54], "highest": [19, 25, 48, 80], "distributon": 19, "state_of_var_observ": [19, 20, 22, 25], "bayesian_model": [19, 43], "cpd_a": [19, 31, 40, 41, 48, 61], "cpd_r": [19, 31, 41], "cpd_j": [19, 25, 31], "cpd_q": [19, 31], "belief_propag": [19, 20, 35], "max_calibr": 19, "beliefpropagationwithmessagepass": 20, "loop": [20, 48], "recurs": 20, "loopi": 20, "mbmlbook": 20, "learningskills_testing_out_the_model": 20, "winn": 20, "microsoft": [20, 68], "research": [20, 21, 56, 68, 69, 77], "calc_factor_node_messag": 20, "incoming_messag": 20, "target_var": 20, "outgo": [20, 50], "incom": [20, 38, 48], "match": [20, 43, 44], "sent": 20, "calc_variable_node_messag": 20, "wise": 20, "get_messag": 20, "factor_graph": [20, 54], "phi4": 20, "set_nod": 21, "game": [21, 37], "estimate_": 21, "estimand_strategi": 21, "smallest": 21, "estimator_typ": [21, 40, 41, 80], "kwarg": [21, 23, 43, 44, 46, 48, 49, 50, 51, 52, 54, 55, 57, 59, 60, 61, 62, 76, 77, 78, 79, 80], "averag": 21, "treatment": 21, "ATE": 21, "exposur": 21, "estimand": 21, "gl": [21, 62], "squar": [21, 39, 53, 62, 79], "ol": 21, "ordinari": 21, "wl": 21, "heteroskedast": 21, "acronym": 21, "alia": [21, 43, 50], "keyward": 21, "satisfi": [21, 43, 79], "variabi": 21, "xi": [21, 57], "xj": 21, "intercept": 21, "get_minimal_adjustment_set": 21, "adjustment_set": [21, 29], "perkov": 21, "emilija": 21, "journal": [21, 39, 77, 79], "8132": 21, "8193": 21, "get_proper_backdoor_graph": 21, "proper": 21, "y1": [21, 57], "z1": 21, "z2": 21, "y2": [21, 57], "c_infer": 21, "0x7fba501ad940": 21, "is_valid_adjustment_set": 21, "predictor": [21, 55, 62], "criteria": 21, "is_valid_backdoor_adjustment_set": [21, 28], "is_valid_frontdoor_adjustment_set": 21, "frontdoor": 21, "formula": 21, "inference_algo": 21, "variable_st": [21, 43], "repes": 21, "paramt": [21, 60], "hr": [21, 34, 38, 39], "0x7f4e0874c2e0": 21, "dbn_infer": 22, "dbninfer": 22, "interfac": [22, 50, 71], "dbn": [22, 47], "dbnet": 22, "z_start_cpd": 22, "x_i_cpd": 22, "y_i_cpd": 22, "z_trans_cpd": 22, "initialize_initial_st": [22, 50], "dbn_inf": 22, "start_junction_tre": 22, "one_and_half_junction_tre": 22, "kevin": [22, 61], "patrick": 22, "murphi": [22, 61], "ubc": 22, "ca": 22, "murphyk": 22, "thesi": 22, "backward_infer": 22, "66594382": 22, "33405618": 22, "forward_infer": 22, "arg": 22, "76738736": 22, "23261264": 22, "correlation_scor": [23, 46], "f1_score": [23, 39, 46], "return_summari": [23, 46], "absens": [23, 46], "against": [23, 46], "g_sq": [23, 46, 79], "log_likelihood": [23, 46, 79], "freeman_tuckei": [23, 46, 79], "modified_log_likelihood": [23, 46, 79], "neyman": [23, 39, 46, 79], "cressie_read": [23, 46, 79], "pearsonr": [23, 39, 46, 79], "fun": [23, 46, 79], "uncorrel": [23, 46], "p_valu": [23, 46, 79], "f1": [23, 39, 46], "scikit": [23, 46, 73], "By": [23, 24, 31, 37, 46, 77, 80], "defult": [23, 46], "get_examples_model": [23, 46], "simul": [23, 46, 48, 50, 53, 79], "1e4": [23, 38, 39, 46], "911957950065703": [23, 46], "log_likelihood_scor": [23, 46], "103818": [23, 46], "57516969478": [23, 46], "structure_scor": [23, 46], "straight": [23, 46], "interpretebl": [23, 46], "bd": [23, 46, 77], "bdsscore": [23, 46], "structurescor": [23, 46, 76, 77], "106665": [23, 46], "9383064447": [23, 46], "bn_infer": 23, "bayesianmodelprob": 23, "pmf": 23, "log_prob": 23, "logarithm": 23, "OR": [23, 50, 56, 74], "array_lik": [23, 43, 56, 68], "n_featur": 23, "datapoint": [23, 48, 59, 61], "monoton": 24, "dual": 24, "lp": 24, "relax": 24, "factor_a": 24, "54577": 24, "8323": 24, "factor_b": 24, "93894": 24, "065": 24, "factor_c": 24, "89205": 24, "121": 24, "factor_d": 24, "56292": 24, "7765": 24, "factor_": 24, "47117": 24, "1224": 24, "factor_f": 24, "5093": 24, "66257": 24, "factor_a_b": 24, "3207": 24, "75717": 24, "factor_b_c": 24, "00024189": 24, "4134": 24, "factor_c_d": 24, "0043227": 24, "231": 24, "factor_d_": 24, "228": 24, "032023": 24, "intersection_set_vari": 24, "cluster_potenti": 24, "set_of_vari": 24, "intersect": [24, 49, 52], "c_1": [24, 68], "cap": [24, 49], "c_2": 24, "c_3": 24, "beforehand": 24, "find_triangl": 24, "triangl": 24, "mm": [24, 48, 51, 54], "x5": [24, 54], "x6": [24, 54], "x7": [24, 54], "get_integrality_gap": 24, "gap": 24, "lesser": 24, "int_gap": 24, "init_it": 24, "later_it": 24, "dual_threshold": 24, "0002": 24, "integrality_gap_threshold": 24, "tighten_triplet": 24, "max_triplet": 24, "max_iter": 24, "prolong": 24, "integ": [24, 25, 43, 50, 56], "decrement": 24, "threshold": 24, "stuck": 24, "minima": 24, "satisfactori": 24, "triplet": 24, "tighten": 24, "moment": [24, 44], "irrespect": 24, "2008": [24, 71], "sontag": 24, "0002418": 24, "12239": 24, "induced_graph": 25, "induced_width": 25, "largest": 25, "minu": 25, "phi_queri": 25, "max_margin": 25, "exact_inf": 25, "eliminationord": 25, "baseeliminationord": 25, "init": [25, 57], "abstract": [25, 31, 44], "fill_in_edg": 25, "get_elimination_ord": 25, "cpd_c": [25, 29, 37, 40, 41, 48, 59, 61], "cpd_h": [25, 37], "protein": 27, "signal": [27, 32], "bnlearn": [27, 30, 33], "repositori": [27, 30, 33, 71], "bnrepositori": [27, 30, 33], "medium": [27, 43, 48], "sach": [27, 63], "digraph": [27, 50, 57, 63, 76], "pprint": [27, 30], "nx": [27, 35, 39, 40, 41, 50, 57, 63, 76, 80], "20a": [27, 33], "20discret": 27, "20bayesian": [27, 33, 79], "20network": [27, 33, 79], "sachs_model": 27, "viz": [27, 30], "dot": [27, 32, 63], "all_nod": 27, "all_edg": 27, "all_cpd": 27, "akt_par": 27, "akt": 27, "pka_children": 27, "pka": [27, 63], "erk": 27, "jnk": 27, "mek": [27, 63], "p38": [27, 63], "pip2": 27, "pkc": 27, "plcg": 27, "raf": 27, "new_nod": 27, "new_node1": 27, "new_node2": 27, "remove_edg": [27, 50], "remove_edges_from": [27, 50], "remove_nod": [27, 48, 50], "remove_nodes_from": [27, 48, 50], "new_cpd": 27, "remove_cpd": [27, 48, 50], "uncondition": 27, "indpeend": 27, "simp_model": 29, "_ax": 29, "0x7f1761cbb700": 29, "cpd_t": 29, "infer_non_adjust": 29, "6000": [29, 31], "4000": [29, 31, 67], "infer_adjust": 29, "cpd_z": 29, "cpd_x": 29, "cpd_w": 29, "cpd_y": 29, "0x7f1760a8ce20": 29, "do_x_w": 29, "do_x_z": 29, "do_x_wz": 29, "infer_simp": 29, "do_simpson": 29, "7240": 29, "2760": 29, "adj_w": 29, "adj_z": 29, "adj_wz": 29, "adj_simpson": 29, "6200": 29, "3800": 29, "5500": 29, "4500": 29, "tabular": [30, 61], "asia_model": [30, 33], "asia": [30, 33, 43, 48, 65, 67, 68, 69], "tub": [30, 33, 43, 48], "smoke": [30, 33, 48], "lung": [30, 33, 43, 48], "bronc": [30, 33, 48], "xrai": [30, 33, 46, 48], "dysp": [30, 33, 48], "0x7f0a02e0e6b0": 30, "0x7f0a02e0ed10": 30, "0x7f0a02e0e8c0": 30, "0x7f0a02e0e770": 30, "0x7f0a02e0da50": 30, "0x7f0a02e0e0e0": 30, "0x7f0a02e0dba0": 30, "0x7f0a02e0c760": 30, "lastli": [30, 38, 63], "cancer_model": 30, "pollut": [30, 46], "dyspnoea": [30, 46], "cpd_poll": 30, "cpd_smoke": 30, "cpd_cancer": 30, "001": [30, 45], "999": [30, 48], "cpd_xrai": 30, "cpd_dysp": 30, "35": [30, 43], "offer": [30, 63], "random_model": 30, "n_state": [30, 48], "0x7f0a88c7ff40": 30, "0x7f0a88c7f910": 30, "0x7f0a88c7ec80": 30, "0x7f0a88c7ece0": 30, "0x7f0a88c7f880": 30, "0x7f0a88c7f850": 30, "0x7f0a88c7f4c0": 30, "0x7f0a88c7f520": 30, "cancer_random": 30, "get_random_cpd": [30, 48], "0x7f0a88c7f250": 30, "0x7f0a88c7ecb0": 30, "0x7f0a88c7ea70": 30, "0x7f0a88c7f1c0": 30, "0x7f0a88c7f460": 30, "prototyp": 31, "idea": 31, "baseinfer": 31, "basefactor": 31, "baseestim": 31, "multipli": [31, 32, 43], "itertool": [31, 35, 39, 50], "factor_product": 31, "simpleinfer": 31, "factors_involving_nod": 31, "factors_list": 31, "reduced_prod": 31, "var_to_marg": 31, "marg_prod": 31, "a_0": 31, "a_1": 31, "img": 32, "mcg": 32, "jpg": 32, "100px": 32, "pca": 32, "analysi": [32, 71, 79], "varieti": 32, "area": [32, 71], "overlap": 32, "stochast": [32, 48], "beta_i": 32, "univari": 32, "400px": 32, "y_": 32, "jx": 32, "evidence_mean": 32, "evidence_vari": 32, "seaborn": 32, "sn": 32, "cm": 32, "mu_x": 32, "sigma_x": 32, "x_norm": 32, "x_sampl": 32, "rv": 32, "x_df": 32, "p_x": 32, "axi": [32, 34, 48, 78], "jointplot": 32, "kde": 32, "supervis": 32, "scheme": 32, "cfrac": 32, "sigma_c": 32, "differenti": 32, "lgm": 32, "700px": 32, "invert": 32, "beta_vec": 32, "genyx": 32, "var_mean": 32, "yx_sampl": 32, "distplot": 32, "to_csv": [32, 43], "gbn_valu": 32, "harishkashyap": 32, "venv": 32, "macosx": 32, "x86_64": 32, "1713": 32, "sequenc": [32, 50], "multidimension": 32, "arr": 32, "seq": 32, "sumval": 32, "108620": 32, "019971": 32, "70061": 32, "804718": 32, "130484": 32, "483348": 32, "0199709961": 32, "b0_coef": 32, "b1_coef": 32, "b2_coef": 32, "530593": 32, "943171": 32, "76157e": 32, "75405452": 32, "69412373": 32, "32531005": 32, "045369149779373": 32, "contact": [32, 71], "hkashyap": 32, "icloud": 32, "thank": [32, 71], "praveen": 32, "kaushik": 32, "diagram": [32, 66], "ai": 32, "kiran": 32, "byadarhali": 32, "karthik": 32, "chandrashekhar": 32, "fetch": 33, "0x7f08a40e6a90": 33, "0x7f08a40e6dc0": 33, "0x7f08a40fa730": 33, "0x7f08a40fa100": 33, "0x7f08a40fa790": 33, "0x7f08a40fa5e0": 33, "0x7f08a40fac40": 33, "0x7f08a40fab80": 33, "scratch": 33, "inferec": 33, "identifc": 33, "asia_inf": 33, "3000": 33, "7000": 33, "0060": 33, "5940": 33, "0040": 33, "3960": 33, "0100": 33, "9900": 33, "lung_virt_evid": 33, "togeth": [33, 54], "custom": [33, 46, 50, 63, 76, 77], "maximumlikelihood": 34, "expectationmaxim": [34, 48, 60], "alarm_model": [34, 48], "1e5": 34, "pcwp": [34, 39], "hypovolemia": [34, 39], "lvedvolum": [34, 38, 39], "lvfailur": [34, 38, 39], "strokevolum": [34, 38, 39], "errlowoutput": [34, 38, 39], "hrbp": [34, 38, 39], "hrekg": [34, 38, 39], "minvolset": [34, 38, 39, 48], "ventmach": [34, 38, 39], "venttub": [34, 38, 39], "ventlung": [34, 38, 39], "ventalv": [34, 39], "artco2": [34, 39], "catechol": [34, 39], "model_struct": 34, "errcaut": 34, "hrsat": 34, "insuffanesth": 34, "anaphylaxi": 34, "tpr": [34, 38], "kinkedtub": 34, "press": [34, 79], "fio2": [34, 38], "pvsat": 34, "sao2": [34, 43], "pulmembolu": 34, "pap": [34, 38], "shunt": [34, 38], "intub": 34, "minvol": [34, 38], "expco2": [34, 38], "04859": 34, "95141": 34, "702671646078713": 34, "0069145318521877126": 34, "010257212769589711": 34, "009480034472852629": 34, "9526184538653366": 34, "03999032606840039": 34, "28784831944843436": 34, "04046701428247563": 34, "94975246116201": 34, "0x7f472f27b880": 34, "0x7f472f27b8b0": 34, "0x7f472f285460": 34, "0x7f472f2c8520": 34, "0x7f472f2c8280": 34, "0x7f472f2d4400": 34, "0x7f472f2ec280": 34, "0x7f472f2c0a30": 34, "0x7f472f2ec3d0": 34, "0x7f472f2d46a0": 34, "allclos": 34, "atol": [34, 60], "pseudo_count": [34, 40, 41, 48, 59, 77], "0530594": 34, "946941": 34, "6974417067875012": 34, "017649638237228676": 34, "011630213055303717": 34, "014065892570565468": 34, "9322516991887744": 34, "041236967361740706": 34, "2884924006419334": 34, "05009866257399693": 34, "9471328195829556": 34, "0x7f472f296910": 34, "0x7f472f28ec10": 34, "0x7f472f27b280": 34, "0x7f472f296880": 34, "0x7f472f28ee20": 34, "0x7f472f2e2b50": 34, "0x7f472fb7dbe0": 34, "0x7f472f03ddc0": 34, "0x7f472f2dae20": 34, "0x7f472f296ee0": 34, "expec": [34, 60], "em": [34, 58], "model_lat": 34, "samples_lat": 34, "46": [34, 39, 79], "season": 35, "mirrordescentestim": 35, "factordict": [35, 49, 61], "2023": 35, "2024": 35, "nfl": 35, "playoff": 35, "bowl": 35, "ti": 35, "team": 35, "homewin": 35, "homefinalscor": 35, "visitorfinalscor": 35, "loss": [35, 44, 62], "hometeamabbr": 35, "union": [35, 57], "visitorteamabbr": 35, "nyg": 35, "dal": 35, "nyj": 35, "buf": 35, "ne": 35, "bal": 35, "hou": 35, "tb": 35, "from_iter": 35, "po": 35, "edge_color": 35, "label_dict": 35, "join": [35, 50, 54], "fontsiz": 35, "center": 35, "va": 35, "orang": 35, "subgraph": [35, 50], "node_color": 35, "with_label": [35, 40, 41, 80], "to_junction_tre": [35, 48, 51, 54], "observed_factor_dict": 35, "from_datafram": 35, "clique_belief": [35, 49], "modeled_factor": 35, "larger": 35, "subplot": 35, "nrow": [35, 48], "ncol": 35, "visitorteamabbr_margin": 35, "total_st": 35, "prod": [35, 59], "flatten": 35, "set_titl": 35, "columns_2": 35, "df2": 35, "marginals_2": 35, "g_2": 35, "factors_2": 35, "identity_factor": [35, 43], "0x32d593ee0": 35, "estimator_2": 35, "l2": 35, "600": 35, "1min": 35, "2min": 35, "wall": 35, "tree_2": 35, "junction_tre": [35, 54], "modeled_factor_2": 35, "hypothet": 35, "sf_kc": 35, "kc": 35, "sf": 35, "kc_sf": 35, "isinst": 35, "sf_kc_sampl": 35, "1_000_000": 35, "kc_sf_sampl": 35, "sf_kc_diff": 35, "avg": 35, "kc_sf_diff": 35, "lviii": 35, "u3": 36, "famou": [37, 71], "theori": [37, 80], "behind": 37, "car": 37, "goat": 37, "pick": [37, 80], "host": [37, 71, 73], "who": 37, "intut": 37, "shouldn": 37, "benefit": 37, "theorem": 37, "contest": 37, "win": 37, "wikipedia": [37, 39, 57, 71, 79], "wiki": [37, 39, 57, 71, 79], "monty_hall_problem": 37, "prize": 37, "33": [37, 79], "cpd_p": 37, "0x7f580a175310": 37, "0x7f58128ad520": 37, "0x7f580a175340": 37, "everyth": [37, 50, 71], "posterior_p": 37, "3333": [37, 61], "6667": [37, 61], "0000": [37, 43, 61, 67], "valueerror": 38, "9452": [], "0548": [], "9847": [], "0153": [], "soft_evid": [], "9609": [], "0391": [], "9488": [], "0512": [], "virtual_intervent": [38, 48, 50], "9508": [], "0492": [], "parallel": [39, 48, 59, 60, 61, 65, 79, 80], "chi": [39, 79], "squared_test": [39, 79], "partial_correl": [39, 79], "using_linear_regress": [39, 79], "freeman": [39, 79], "tuckei": [39, 79], "campbel": [39, 79], "tukei": [39, 79], "1993": [39, 79], "271": [39, 79], "278": [39, 79], "neymann": 39, "e2": [39, 79], "93pearson_lemma": [39, 79], "cressi": [39, 79], "noel": [39, 79], "timothi": [39, 79], "rc": [39, 79], "multinomi": [39, 79], "royal": [39, 79], "societi": [39, 79], "methodolog": [39, 79], "1984": [39, 57, 79], "440": [39, 79], "464": [39, 79], "exhausit": 39, "1e3": [39, 46, 48], "544": 39, "funtion": 39, "get_f1_scor": 39, "estimated_model": 39, "true_model": 39, "est_adj": 39, "to_numpy_arrai": 39, "to_undirect": [39, 50], "nodelist": 39, "true_adj": 39, "ravel": 39, "max_cond_var": [39, 79], "7777777777777779": 39, "orig": [39, 79], "88": [39, 48], "max_it": [39, 60, 62, 77], "28it": 39, "attempt": [40, 41, 50, 77], "draw_circular": [40, 41, 80], "arrows": [40, 41, 80], "node_s": [40, 41], "800": [40, 41, 48], "font_weight": [40, 41], "bold": [40, 41], "cpd_b": [40, 41, 48], "cpd_e": [40, 41], "cpd_f": 40, "df_data": [40, 41], "275": 40, "41it": 40, "9995": [40, 41], "9996": [40, 41], "9997": [40, 41], "9998": [40, 41], "9999": [40, 41], "treesearch": [40, 41, 80], "root_nod": [40, 41, 80], "4518": 40, "10it": 40, "0x7f24dd4dbdf0": 40, "0x7f24dd4d4ee0": 40, "0x7f24dd4d7790": 40, "0x7f24dd4d7ee0": 40, "0x7f24dd4c7cd0": 40, "0x7f24dd4d7c10": 40, "comparison": 41, "blog": [41, 71], "post": [41, 71], "192": [41, 43, 48], "64it": 41, "class_nod": [41, 80], "5215": 41, "93it": 41, "0x7f43c56f1820": 41, "0x7f43c57328e0": 41, "0x7f43c56be4c0": 41, "0x7f43c56f1b20": 41, "0x7f43c56becd0": 41, "0x7f43c56f1a00": 41, "2d": [43, 53, 57], "aptitud": [43, 48], "gradea": [43, 48], "gradeb": [43, 48], "gradec": [43, 48], "intel_2": 43, "get_evid": 43, "var_nam": [43, 57], "card": [43, 53], "0x7f95e22b8040": 43, "a1": 43, "a2": 43, "b1": 43, "b2": 43, "c1": 43, "c2": 43, "get_valu": [43, 65, 69], "evi1": 43, "cpd_tabl": 43, "63636364": 43, "33333333": 43, "36363636": 43, "66666667": 43, "show_warn": 43, "context": 43, "reorder_par": 43, "new_ord": 43, "old": 43, "export": 43, "to_factor": 43, "distinguish": 43, "lost": 43, "0x7f847a4f2d68": 43, "x1_0": 43, "x2_0": 43, "x3_0": 43, "x3_1": 43, "x2_1": 43, "x1_1": 43, "cycl": 43, "fastest": 43, "0x7f8188fcaa90": 43, "arang": 43, "phi_copi": 43, "denomin": 43, "variable_cardin": [43, 77], "fall": 43, "spcifi": 43, "ident": [43, 48, 50, 60, 61, 76], "phi_ident": 43, "is_valid_cpd": 43, "09": [43, 77], "01515152": 43, "03030303": 43, "04545455": 43, "06060606": 43, "07575758": 43, "09090909": 43, "10606061": 43, "12121212": 43, "13636364": 43, "15151515": 43, "16666667": 43, "mutlipli": 43, "77": 43, "set_valu": 43, "jointprobabilitydistribut": [43, 48], "check_independ": 43, "condition_random_vari": 43, "1d": 43, "jpd": [43, 48], "prob": 43, "126": 43, "168": 43, "009": 43, "045": 43, "0224": 43, "0056": 43, "036": 43, "024": [43, 48], "g_1": 43, "conditional_distribut": 43, "prob_copi": 43, "is_imap": [43, 48], "imap": [43, 48], "bm": [43, 54], "006": [43, 48], "048": [43, 48], "004": [43, 48], "032": [43, 48], "016": [43, 48], "128": [43, 48], "marginal_distribut": 43, "1502": 43, "1626": 43, "x2_2": 43, "1197": 43, "2339": 43, "1996": 43, "1340": 43, "minimal_imap": 43, "0x7fd7440a9320": 43, "namespac": 44, "continuousnod": 44, "childdiscret": 44, "get_discrete_valu": 44, "0x04c98190": 44, "get_label": 44, "overridden": 44, "child": [44, 67, 68], "chld": 44, "roundingdiscret": 44, "round": [44, 65, 67], "cdf": 44, "cumul": 44, "001629865203424451": 44, "009244709419989363": 44, "027834684208773178": 44, "065590616803038182": 44, "120977578710013": 44, "17466632194020804": 44, "19741265136584729": 44, "17466632194020937": 44, "12097757871001302": 44, "065590616803036905": 44, "027834684208772664": 44, "0092447094199902269": 44, "unbiaseddiscret": 44, "unbias": 44, "_lim_moment": 44, "klugman": 44, "panjer": 44, "willmot": 44, "fourth": [44, 57], "wilei": [44, 62], "exercis": 44, "exp_pdf": 44, "exp_nod": 44, "39627368905806137": 44, "4049838434034298": 44, "13331784003148325": 44, "043887287876647259": 44, "014447413395300212": 44, "0047559685431339703": 44, "0015656350182896128": 44, "00051540201980112557": 44, "00016965346326140994": 44, "7867260839208328e": 44, "pure": 45, "focu": 45, "modular": 45, "alogrithm": 45, "hybrid": [45, 78], "approximateinfer": 45, "search": [45, 75, 78, 79], "ankan": [45, 79], "abinash": 45, "proceed": [45, 79], "confer": [45, 57, 79], "bibtex": 45, "inproceed": 45, "ankan2015": 45, "issn": 45, "2575": 45, "9752": 45, "url": 45, "doi": [45, 54], "25080": 45, "majora": 45, "7b98e3e": 45, "booktitl": 45, "publish": [45, 74], "fisher_c": 46, "ci_test": [46, 79], "constraint": [46, 75], "ci": [46, 71, 79], "statement": 46, "fisher": 46, "implied_ci": 46, "7504": 46, "cond_var": 46, "189851": 46, "404149": 46, "613370": 46, "352665": 46, "888619": 46, "sem": [47, 62], "neither": 48, "grades_cpd": 48, "tol": [48, 50], "copy_model": 48, "do_bronc": 48, "keyword": [48, 50], "unspecifi": [48, 60, 61, 76, 77, 78], "thread": 48, "slower": [48, 59, 60, 61], "0x7fb98a7d50f0": 48, "0x7fb98a7d5588": 48, "0x7fb98a7b1f98": 48, "fit_upd": 48, "n_prev_sampl": 48, "intern": [48, 53, 57], "along": [48, 50, 53, 79], "hasn": 48, "cpd_diff": 48, "cpd_intel": 48, "cpd_grade": 48, "defaultdict": [48, 49, 51, 54], "get_factorized_product": 48, "0x7f97e16eabe0": 48, "0x7f97e16ea670": 48, "0x7f97e16820d0": 48, "0x7f97e16eae80": 48, "0x7f97e1682c40": 48, "get_state_prob": 48, "02605122": 48, "filetyp": 48, "bif": [48, 64, 68], "train_data": 48, "predict_data": 48, "y_pred": 48, "801": 48, "802": [48, 77], "803": 48, "804": 48, "993": 48, "994": 48, "995": 48, "996": 48, "997": 48, "998": 48, "predict_prob": 48, "y_prob": 48, "b_0": 48, "b_1": [48, 68], "439178": 48, "560822": 48, "581970": 48, "418030": 48, "488275": 48, "511725": 48, "83": 48, "510794": 48, "489206": 48, "85": [48, 65, 69, 79], "87": [48, 57], "417124": 48, "582876": 48, "407978": 48, "592022": 48, "429905": 48, "570095": 48, "91": 48, "92": 48, "93": 48, "94": 48, "96": 48, "559904": 48, "440096": 48, "0x7f28248e2438": 48, "0x7f28248e23c8": 48, "0x7f28248e2748": 48, "0x7f28248e26a0": 48, "0x7f28248e2a58": 48, "0x7f28248e26d8": 48, "plese": 48, "intervent": [48, 50], "virt_evid": 48, "virt_intervent": 48, "state_dict": [48, 52, 54], "jt": 48, "to_markov_model": [48, 51], "clustergraph": 49, "formal": 49, "c_i": 49, "subseteq": 49, "famili": [49, 65, 69, 79], "c_j": 49, "s_": 49, "across": [49, 50, 51, 54, 71], "graph_copi": 49, "0xb71b19cc": 49, "0xb4eaf3ac": 49, "get_factor": [49, 51, 54], "get_partition_funct": [49, 51, 54], "prod_": [49, 51, 54], "phi_i": [49, 51, 54], "remove_factor": [49, 51, 54], "slice": 50, "replic": 50, "s8": 50, "postimg": 50, "aaybw4x2t": 50, "blank_flowchart_new_page_1": 50, "tbn": 50, "inter_slic": 50, "intra_slic": 50, "node_nam": 50, "time_slic": 50, "belong": [50, 79], "d_i_cpd": 50, "i_i_cpd": 50, "0x7ff7f27b0cf8": 50, "0x7ff810b9c2e8": 50, "0x7ff7f27e6f98": 50, "0x7ff7f27e6ba8": 50, "0x7ff7f27e6668": 50, "attr": 50, "add_weighted_edges_from": 50, "ebunch_to_add": 50, "twice": 50, "multigraph": 50, "multidigraph": 50, "duplic": 50, "runtimeerror": 50, "iterator_of_edg": 50, "wrong": [50, 71, 76, 77], "adj": 50, "adjac": [50, 54], "idiom": 50, "nbr": 50, "datadict": 50, "subscript": 50, "foovalu": 50, "foo": 50, "successor": 50, "info": [50, 80], "adj_it": 50, "path_graph": 50, "nbrdict": 50, "adjlist_inner_dict_factori": 50, "adjlist_outer_dict_factori": 50, "clear_edg": 50, "alter": 50, "dbn_copi": 50, "0x7f13961a3320": 50, "degre": 50, "degreeview": 50, "incid": 50, "lookup": 50, "view": 50, "didegreeview": 50, "in_degre": 50, "out_degre": 50, "add_path": 50, "edge_attr_dict_factori": 50, "edge_subgraph": 50, "edgedataview": 50, "ddict": 50, "in_edg": 50, "out_edg": 50, "quietli": 50, "outedgedataview": 50, "stai": 50, "throughtout": 50, "consecut": 50, "colnam": 50, "get_constant_bn": 50, "t_slice": 50, "get_edge_data": 50, "edge_dict": 50, "permit": [50, 71, 74], "safe": 50, "get_inter_edg": 50, "inter": 50, "get_interface_nod": 50, "timeslic": 50, "get_intra_edg": 50, "intra": 50, "get_slice_nod": 50, "graph_attr_dict_factori": 50, "has_edg": 50, "edge_ind": 50, "data_dictionari": 50, "has_nod": 50, "simpler": 50, "has_predecessor": 50, "predecessor": 50, "has_successor": 50, "indegreeview": 50, "deg": 50, "nd_iter": 50, "inedgeview": 50, "inedgedataview": 50, "0th": [50, 67], "1st": [50, 67], "is_direct": 50, "is_multigraph": 50, "technic": 50, "entir": [50, 61], "nbunch_it": 50, "membership": 50, "silent": 50, "niter": 50, "networkxerror": 50, "__iter__": 50, "routin": 50, "possibli": [50, 71], "node_attr_dict_factori": 50, "node_dict_factori": 50, "nodedataview": 50, "nodedata": 50, "5pm": 50, "Not": 50, "never": [50, 71, 77], "number_of_edg": 50, "nedg": 50, "number_of_nod": 50, "nnode": 50, "__len__": 50, "outdegreeview": 50, "pred": 50, "0x3348ab0": 50, "unpack": 50, "Will": 50, "fail": [50, 62, 71, 79], "nonexist": 50, "iterator_of_nod": 50, "n_time_slic": 50, "g_i_cpd": 50, "share": 50, "NOT": [50, 74], "sg": [50, 66], "__class__": 50, "largest_wcc": 50, "keydict": 50, "succ": 50, "as_view": 50, "deepcopi": 50, "contrast": 50, "shallow": 50, "deep": 50, "transfer": 50, "to_directed_class": 50, "design": [50, 71], "reciproc": 50, "manual": [50, 73], "to_undirected_class": 50, "complete_graph": 50, "225": 50, "singleton": 50, "tweak": 50, "dg": 50, "mdg": 50, "ekei": 50, "dynamicnod": 50, "to_tupl": 50, "bipartit": 51, "variable_nod": 51, "factor_nod": 51, "maintain": 51, "g_copi": [51, 54], "0xb4badd4c": 51, "0xb4badf2c": 51, "get_factor_nod": 51, "sure": 51, "0x4b8c7f0": 51, "0x4b8c5b0": 51, "get_point_mass_messag": 51, "get_uniform_messag": 51, "get_get_uniform_messag": 51, "get_variable_nod": 51, "treeo": 51, "modelcopi": 52, "0xb720ee4c": 52, "0xb4e1e06c": 52, "0xb4bd11ec": 52, "0xb4bd138c": 52, "markovchain": 53, "mc": 53, "add_variables_from": 53, "Or": [53, 56, 61, 71], "intel_tm": 53, "add_transition_model": 53, "diff_tm": 53, "set_start_st": 53, "transition_model": 53, "probal": 53, "add_vari": [53, 56], "grade_tm": 53, "grade_tm_matrix": 53, "model_copi": 53, "is_stationar": 53, "toler": [53, 60], "steadi": 53, "prob_from_sampl": 53, "window_s": 53, "window": 53, "random_st": 53, "reorder": 53, "debbi": 54, "0x": 54, "factor1": 54, "factor2": 54, "0x7f8a0e9bf630": 54, "0x7f8a0e9bf5f8": 54, "get_local_independ": 54, "mb": 54, "indeped": 54, "markov_blanket": 54, "to_bayesian_model": 54, "to_factor_graph": 54, "triangul": 54, "h6": 54, "h1": 54, "h2": 54, "h3": 54, "h4": 54, "h5": 54, "decid": [54, 79], "triagul": 54, "citeseerx": 54, "ist": 54, "psu": 54, "edu": [54, 56, 61, 65, 66, 69], "viewdoc": 54, "summari": [54, 71], "3607": 54, "g_chordal": 54, "naivebay": 55, "feature_var": 55, "dependent_var": 55, "parent_nod": 55, "previous": 55, "0x4b72870": 55, "0x4bb2150": 55, "0x4bb23d0": 55, "0x4bb24b0": 55, "0x4bb2750": 55, "noisyormodel": 56, "inhibitor_prob": 56, "noisi": 56, "xenon": 56, "stanford": 56, "sriniva": 56, "uai93": 56, "inhibitor": 56, "del_vari": 56, "wrapper": [57, 63], "semgraph": 57, "semalg": 57, "classmethod": 57, "from_ram": 57, "zeta": [57, 62], "wedge_i": 57, "fixed_valu": 57, "reticular": 57, "ram": 57, "notat": 57, "mathbf": 57, "eta": 57, "definit": [57, 69], "todo": [57, 62, 71], "finish": [57, 62], "from_graph": 57, "err_corr": 57, "err_var": 57, "covar": 57, "sentiment": [57, 71], "paramat": 57, "deferenc": 57, "unionsen": 57, "laboract": 57, "yrsmill": 57, "ag": 57, "educ": 57, "sem_edu": 57, "academ": 57, "scale_1": 57, "scale_2": 57, "scale_3": 57, "73": [57, 69], "scale_4": 57, "sat_scor": 57, "high_school_gpa": 57, "act_scor": 57, "mcdonald": 57, "clelland": 57, "textil": 57, "worker": 57, "social": 57, "502": 57, "521": 57, "structural_equation_model": 57, "media": 57, "example_structural_equation_model": 57, "svg": [57, 63], "from_lavaan": 57, "lavaan": 57, "multilin": 57, "ugent": 57, "syntax1": 57, "from_lisrel": 57, "param": [57, 62, 66], "fixed_mask": 57, "lisrel": 57, "gamma": 57, "wedge_x": 57, "endogen": 57, "exogen": 57, "str_model": 57, "theta_": 57, "theta_del": 57, "psi": 57, "fixed_param": 57, "learnabl": 57, "algebra": 57, "set_param": 57, "to_semgraph": 57, "err_graph": 57, "full_graph_struct": 57, "avoid_nod": 57, "struct": 57, "graph_struct": 57, "account": [57, 71, 80], "non_error": 57, "condis": 57, "get_conditional_iv": 57, "scaling_ind": 57, "iv": [57, 62], "oberv": 57, "van": 57, "der": 57, "zander": 57, "textor": [57, 79], "liskiewicz": 57, "june": 57, "instrument": [57, 62], "twenti": 57, "artifici": [57, 79], "get_iv": 57, "get_scaling_ind": 57, "xi1": 57, "eta1": 57, "to_lisrel": 57, "to_standard_lisrel": 57, "theta_delta": 57, "constructor": [59, 76], "indict": 59, "hyperparamet": [59, 77], "node_card": 59, "parents_card": 59, "lexicograph": 59, "node_cardin": 59, "parents_cardin": 59, "6666666666666666": 59, "priort_typ": 59, "job": [59, 60, 61, 65, 71, 80], "0x7f7b534251d0": [59, 60, 61], "0x7f7b4dfd4da0": [59, 60, 61], "0x7f7b4dfd4fd0": [59, 60, 61], "0x7f7b4df822b0": [59, 60, 61], "latent_card": 60, "1e": [60, 77], "batch_siz": 60, "init_cpd": 60, "latent_var": 60, "exit": [60, 66, 77], "batch": 60, "intial": 60, "666667": 61, "333333": 61, "estimate_potenti": 61, "perspect": 61, "mrf": 61, "ipf": 61, "eric": 61, "xing": 61, "meng": 61, "song": 61, "li": [61, 79], "zhou": 61, "708": 61, "spring": 61, "cmu": [61, 65, 69], "epx": 61, "10708": 61, "scribe_not": 61, "scribe_note_lecture8": 61, "ivestim": 62, "civ": 62, "coditional_var": 62, "semestim": 62, "opt": 62, "adam": 62, "init_valu": 62, "exit_delta": 62, "0001": [62, 77], "ul": 62, "2sl": 62, "unweight": 62, "sl": 62, "std": 62, "bollen": 62, "york": 62, "get_init_valu": 62, "4c": 62, "john": 62, "son": 62, "gls_loss": 62, "loss_arg": 62, "f_": 62, "tr": 62, "theta": 62, "torch": 62, "tensor": 62, "ml_loss": 62, "uls_loss": 62, "interchang": 64, "readwrit": [65, 66, 67, 68, 69], "bifread": 65, "include_properti": 65, "dog": [65, 69], "javabay": 65, "dogproblem": 65, "bif_test": 65, "0x7f2375621cf8": 65, "geoff": 65, "hulten": 65, "pedro": 65, "domingo": 65, "washington": 65, "dm": 65, "vfml": 65, "appendix": 65, "htm": 65, "get_edg": [65, 67, 68, 69], "light": [65, 69], "bowel": [65, 69], "hear": [65, 69], "bark": [65, 69], "state_name_typ": [65, 69], "0x7f20af154320": 65, "get_network_nam": 65, "network_nam": 65, "get_probability_grammar": 65, "grammar": [65, 67], "get_properti": [65, 69], "335": 65, "300": 65, "195": 65, "257": 65, "296": 65, "268": 65, "218": 65, "get_stat": [65, 69], "get_variable_grammar": 65, "get_vari": [65, 66, 67, 68, 69], "bowel_problem": 65, "bifwrit": 65, "round_valu": [65, 67], "initialis": [65, 66, 69], "decim": [65, 67], "writer_bif": 65, "0x7f05e5ea27b8": 65, "write_bif": 65, "bif_templ": 65, "templat": 65, "problem_0": 65, "problem_1": 65, "out_0": 65, "out_1": 65, "bark_0": 65, "bark_1": 65, "on_0": 65, "on_1": 65, "pomdpxread": 66, "testpomdpx": 66, "bigbird": 66, "comp": 66, "nu": 66, "pmwiki": 66, "farm": 66, "php": 66, "pomdpxdocument": 66, "get_descript": 66, "test_pomdpx": 66, "rocksampl": 66, "rock": 66, "rover": 66, "get_discount": 66, "discount": 66, "get_initial_belief": 66, "rover_0": 66, "null": [66, 78, 79], "tbl": 66, "probtabl": 66, "get_obs_funct": 66, "obs_sensor": 66, "action_rov": 66, "rover_1": 66, "rock_1": 66, "amw": 66, "get_parameter_dd": 66, "get_parameter_tbl": 66, "get_reward_funct": 66, "reward": 66, "reward_rov": 66, "rock_0": 66, "s1": 66, "valuet": 66, "get_state_transition_funct": 66, "s0": 66, "s2": 66, "statevar": 66, "vnameprev": 66, "vnamecurr": 66, "valueenum": 66, "fullyob": 66, "obsvar": 66, "vname": 66, "ogood": 66, "obad": 66, "rewardvar": 66, "actionvar": 66, "ac": [66, 79], "pomdpxwrit": 66, "prettyprint": [66, 68, 69], "indent": [66, 68, 69], "add_condit": 66, "condprob": 66, "helper": [38, 66], "etre": 66, "subel": 66, "add_initial_belief": 66, "add_obs_funct": 66, "add_parameter_dd": 66, "dag_tag": 66, "node_dict": 66, "add_reward_funct": 66, "add_state_transition_funct": 66, "elem": [66, 68, 69], "formatt": [66, 68, 69], "uairead": 67, "testuai": 67, "uaicompetit": 67, "uci": 67, "2022": 67, "forgemia": 67, "inra": 67, "fr": 67, "thoma": 67, "schiex": 67, "toulbar2": 67, "uai08format": 67, "get_domain": 67, "var_0": 67, "var_1": 67, "var_2": 67, "get_grammar": 67, "get_network_typ": 67, "get_tabl": 67, "000": 67, "400": 67, "7500": 67, "8750": 67, "3330": 67, "var_3": 67, "uaiwrit": 67, "write_uai": 67, "get_funct": 67, "get_nod": 67, "xbn": 68, "test_xbn": 68, "coverpag": 68, "msdefault19990414": 68, "1999": 68, "get_analysisnotebook_valu": 68, "analysisnotebook": 68, "xbn_test": 68, "get_bnmodel_nam": 68, "bnmodel": 68, "ndarrai": 68, "d_0": 68, "d_1": 68, "c_0": 68, "get_static_properti": 68, "staticproperti": 68, "msr": 68, "dta": 68, "creator": 68, "set_bnmodel_nam": 68, "set_distribut": 68, "set_edg": 68, "edge_list": 68, "arc": [68, 77], "set_static_properti": 68, "set_vari": 68, "write_xbn": 68, "xmlbifread": 69, "xmlbif_test": 69, "fgcozman": 69, "interchangeformat": 69, "af": 69, "190": 69, "155": 69, "165": 69, "154": 69, "241": 69, "xmlbifwrit": 69, "write_xmlbif": 69, "get_definit": 69, "0x7f1d48977408": 69, "0x7f1d489773c8": 69, "0x7f1d48977388": 69, "0x7f1d48977348": 69, "0x7f1d48977448": 69, "0x7f7a2ffac1c8": 69, "0x7f7a2ffac148": 69, "0x7f7a2ffac188": 69, "0x7f7a2ffac0c8": 69, "0x7f7a2ffac108": 69, "0x7ffbabfcdec8": 69, "0x7ffbabfcdf08": 69, "0x7ffbabfd4108": 69, "0x7ffbabfd4148": 69, "0x7ffbabfd4088": 69, "0x7ffbabfd40c8": 69, "0x7ffbabfcdf48": 69, "0x7ffbabfcdf88": 69, "0x7ffbabfcdfc8": 69, "0x7ffbabfd4048": 69, "0x7f240726f3c8": 69, "0x7f240726f488": 69, "0x7f240726f388": 69, "0x7f240726f408": 69, "0x7f240726f448": 69, "0x7fe28607dd88": 69, "0x7fe28607de08": 69, "0x7fe28607de48": 69, "0x7fe28607ddc8": 69, "0x7fe28607de88": 69, "contribut": 70, "licens": 70, "hi": 71, "summar": 71, "scm": 71, "revision_control": 71, "plenti": [63, 71], "pro": 71, "challeng": 71, "gitflow": 71, "nvie": 71, "success": 71, "manag": 71, "usernam": 71, "portugues": 71, "hotfix": 71, "download": 71, "commit": 71, "web": 71, "wait": 71, "robot": 71, "thoughtbot": 71, "deploy": 71, "unwant": 71, "stage": 71, "cach": [71, 76, 77], "review": 71, "pep8": 71, "pep": 71, "0008": 71, "topic": 71, "dead": 71, "codinghorror": 71, "nosetest": 71, "broke": 71, "friendli": 71, "pain": 71, "six": 71, "pypi": [71, 73], "travi": 71, "unittest": 71, "autom": 71, "big": 71, "worri": 71, "blind": 71, "fear": 71, "recommend": [71, 79], "driven": 71, "driven_develop": 71, "gitter": 71, "im": 71, "welcom": 71, "googlegroup": 71, "happi": 71, "anaconda": 73, "conda": 73, "ankurankan": 73, "pypars": 73, "pytorch": 73, "tqdm": 73, "joblib": 73, "mit": [74, 79], "copyright": 74, "2021": 74, "permiss": 74, "herebi": 74, "grant": 74, "charg": 74, "person": 74, "softwar": 74, "merg": 74, "sublicens": 74, "sell": 74, "whom": 74, "furnish": 74, "subject": 74, "shall": 74, "substanti": 74, "THE": 74, "AS": 74, "warranti": 74, "OF": 74, "BUT": 74, "TO": 74, "merchant": 74, "FOR": 74, "purpos": 74, "AND": 74, "noninfring": 74, "IN": 74, "NO": 74, "holder": 74, "BE": 74, "liabl": 74, "claim": 74, "damag": 74, "liabil": 74, "contract": 74, "tort": 74, "WITH": 74, "use_cach": [76, 77], "aicscor": [76, 77], "all_dag": 76, "feasibl": 76, "weather": 76, "sunni": 76, "cloudi": 76, "humid": 76, "0x7f6955216438": 76, "0x7f6955216518": 76, "searcher": 76, "24234": 76, "44977974726": 76, "449760691063": 76, "24203": 76, "700955937973": 76, "700936881774": 76, "24172": 76, "952132128685": 76, "16597": 76, "30920265254": 76, "309183596342": 76, "16566": 76, "560378843253": 76, "16268": 76, "324549347722": 76, "324530291524": 76, "16237": 76, "575725538434": 76, "0x7f695c535470": 76, "811ff": 77, "start_dag": 77, "fixed_edg": 77, "1000000": 77, "modif": [77, 78, 79], "serv": [77, 78], "unequ": 77, "1e6": 77, "abcdefghi": 77, "10th": 77, "imaginari": 77, "sensit": 77, "esp": 77, "806": 77, "carvalho": 77, "lx": 77, "pt": 77, "asmc": 77, "pub": 77, "ta": 77, "ta_pr": 77, "penalti": 77, "modified_variable_cardin": 77, "scutari": 77, "marco": 77, "empir": 77, "438": 77, "structure_prior": 77, "structure_prior_ratio": 77, "ratio": [77, 79], "dsl": 78, "lab": 78, "supplement": 78, "mmhc_paper": 78, "paper_onlin": 78, "xyzw": 78, "reject": 78, "sparser": 78, "wit": [78, 79], "abcd": [78, 79], "sep_set": 78, "xyz": 78, "technion": 79, "il": 79, "dang": 79, "20richard": 79, "separating_set": 79, "admit": 79, "semi": 79, "graphoid": 79, "axiom": 79, "independec": 79, "independence_match": 79, "pertial": 79, "pearson": 79, "spirt": 79, "glymour": 79, "schein": 79, "causat": 79, "2nd": 79, "ed": 79, "cambridg": 79, "ma": 79, "colombo": 79, "maathui": 79, "arxiv": 79, "nov": 79, "le": 79, "thuc": 79, "discoveri": 79, "multi": 79, "ieee": [79, 80], "acm": 79, "transact": [79, 80], "biologi": 79, "bioinformat": 79, "model_chi": 79, "model_gsq": 79, "abd": 79, "chisquar": 79, "devianc": 79, "dof": 79, "u27c2": 79, "50000": 79, "indepened": 79, "confid": 79, "residu": 79, "pearson_correlation_coeffici": 79, "power_diverg": 79, "lambda_": 79, "comparis": 79, "mod": 79, "chow": 80, "liu": 80, "augment": 80, "naiv": 80, "tan": 80, "span": 80, "mutual": 80, "auto": 80, "IT": 80, "462": 80, "467": 80, "geiger": 80, "goldszmidt": 80, "1997": 80, "131": 80, "163": 80, "edge_weights_fn": 80, "mutual_info": 80, "arrowstyl": 80, "fanci": 80, "graphviz": 63, "model_graphviz": 63, "tryout": 63, "twopi": 63, "circo": 63, "fdp": 63, "nop": 63, "suitabl": 63, "model_daft": 63, "savefig": 63, "model_daft_custom": 63, "shade": 63, "grid_unit": 63, "ci_pillai": 79, "mix": 79, "xgboost": 79, "pillai": 79, "johann": 79, "unifi": 79, "ordin": 79, "aaai": 79, "shepherd": 79, "american": 79, "muller": 79, "peterson": 79, "1d9902c71853436cab68f0fb11c95ea5": 8, "74be969daea74c76b85fe802b420a4b9": 8, "global_var": 38, "logger": 38, "setlevel": 38, "cpv": 38, "cvp_evid": 38, "2414": 38, "0692": 38, "6894": 38, "interven": 38, "cvp_intervent": 38, "3814": 38, "2110": 38, "4076": 38, "partial_cvp": 38}, "objects": {"pgmpy.base": [[5, 0, 1, "", "DAG"], [4, 1, 0, "-", "DAG"], [5, 0, 1, "", "PDAG"], [4, 1, 0, "-", "PDAG"]], "pgmpy.base.DAG": [[4, 0, 1, "", "DAG"], [4, 0, 1, "", "PDAG"], [5, 2, 1, "", "active_trail_nodes"], [5, 2, 1, "", "add_edge"], [5, 2, 1, "", "add_edges_from"], [5, 2, 1, "", "add_node"], [5, 2, 1, "", "add_nodes_from"], [5, 2, 1, "", "do"], [5, 2, 1, "", "get_ancestral_graph"], [5, 2, 1, "", "get_children"], [5, 2, 1, "", "get_immoralities"], [5, 2, 1, "", "get_independencies"], [5, 2, 1, "", "get_leaves"], [5, 2, 1, "", "get_markov_blanket"], [5, 2, 1, "", "get_parents"], [5, 2, 1, "", "get_random"], [5, 2, 1, "", "get_roots"], [5, 2, 1, "", "is_dconnected"], [5, 2, 1, "", "is_iequivalent"], [5, 2, 1, "", "local_independencies"], [5, 2, 1, "", "minimal_dseparator"], [5, 2, 1, "", "moralize"], [5, 2, 1, "", "to_daft"], [5, 2, 1, "", "to_graphviz"]], "pgmpy.base.DAG.DAG": [[4, 2, 1, "", "active_trail_nodes"], [4, 2, 1, "", "add_edge"], [4, 2, 1, "", "add_edges_from"], [4, 2, 1, "", "add_node"], [4, 2, 1, "", "add_nodes_from"], [4, 2, 1, "", "do"], [4, 2, 1, "", "get_ancestral_graph"], [4, 2, 1, "", "get_children"], [4, 2, 1, "", "get_immoralities"], [4, 2, 1, "", "get_independencies"], [4, 2, 1, "", "get_leaves"], [4, 2, 1, "", "get_markov_blanket"], [4, 2, 1, "", "get_parents"], [4, 2, 1, "", "get_random"], [4, 2, 1, "", "get_roots"], [4, 2, 1, "", "in_degree_iter"], [4, 2, 1, "", "is_dconnected"], [4, 2, 1, "", "is_iequivalent"], [4, 2, 1, "", "local_independencies"], [4, 2, 1, "", "minimal_dseparator"], [4, 2, 1, "", "moralize"], [4, 2, 1, "", "out_degree_iter"], [4, 2, 1, "", "to_daft"], [4, 2, 1, "", "to_graphviz"]], "pgmpy.base.DAG.PDAG": [[4, 2, 1, "", "copy"], [4, 2, 1, "", "to_dag"], [4, 2, 1, "", "to_graphviz"]], "pgmpy.base.PDAG": [[5, 2, 1, "", "copy"], [5, 2, 1, "", "to_dag"], [5, 2, 1, "", "to_graphviz"]], "pgmpy.estimators": [[77, 0, 1, "", "BDeuScore"], [77, 0, 1, "", "BDsScore"], [59, 0, 1, "", "BayesianEstimator"], [77, 0, 1, "", "BicScore"], [79, 1, 0, "-", "CITests"], [76, 0, 1, "", "ExhaustiveSearch"], [60, 0, 1, "", "ExpectationMaximization"], [77, 0, 1, "", "HillClimbSearch"], [62, 0, 1, "", "IVEstimator"], [77, 0, 1, "", "K2Score"], [78, 0, 1, "", "MmhcEstimator"], [79, 0, 1, "", "PC"], [62, 0, 1, "", "SEMEstimator"], [80, 0, 1, "", "TreeSearch"]], "pgmpy.estimators.BDeuScore": [[77, 2, 1, "", "local_score"]], "pgmpy.estimators.BDsScore": [[77, 2, 1, "", "local_score"], [77, 2, 1, "", "structure_prior"], [77, 2, 1, "", "structure_prior_ratio"]], "pgmpy.estimators.BayesianEstimator": [[59, 2, 1, "", "estimate_cpd"], [59, 2, 1, "", "get_parameters"]], "pgmpy.estimators.BicScore": [[77, 2, 1, "", "local_score"]], "pgmpy.estimators.CITests": [[79, 3, 1, "", "chi_square"], [79, 3, 1, "", "ci_pillai"], [79, 3, 1, "", "cressie_read"], [79, 3, 1, "", "freeman_tuckey"], [79, 3, 1, "", "g_sq"], [79, 3, 1, "", "independence_match"], [79, 3, 1, "", "log_likelihood"], [79, 3, 1, "", "modified_log_likelihood"], [79, 3, 1, "", "neyman"], [79, 3, 1, "", "pearsonr"], [79, 3, 1, "", "power_divergence"]], "pgmpy.estimators.ExhaustiveSearch": [[76, 2, 1, "", "all_dags"], [76, 2, 1, "", "all_scores"], [76, 2, 1, "", "estimate"]], "pgmpy.estimators.ExpectationMaximization": [[60, 2, 1, "", "get_parameters"]], "pgmpy.estimators.HillClimbSearch": [[77, 2, 1, "", "estimate"]], "pgmpy.estimators.IVEstimator": [[62, 2, 1, "", "fit"]], "pgmpy.estimators.K2Score": [[77, 2, 1, "", "local_score"]], "pgmpy.estimators.MLE": [[61, 0, 1, "", "MaximumLikelihoodEstimator"]], "pgmpy.estimators.MLE.MaximumLikelihoodEstimator": [[61, 2, 1, "", "estimate_cpd"], [61, 2, 1, "", "estimate_potentials"], [61, 2, 1, "", "get_parameters"]], "pgmpy.estimators.MmhcEstimator": [[78, 2, 1, "", "estimate"], [78, 2, 1, "", "mmpc"]], "pgmpy.estimators.PC": [[79, 2, 1, "", "build_skeleton"], [79, 2, 1, "", "estimate"], [79, 2, 1, "", "skeleton_to_pdag"]], "pgmpy.estimators.SEMEstimator": [[62, 2, 1, "", "fit"], [62, 2, 1, "", "get_init_values"], [62, 2, 1, "", "gls_loss"], [62, 2, 1, "", "ml_loss"], [62, 2, 1, "", "uls_loss"]], "pgmpy.estimators.TreeSearch": [[80, 2, 1, "", "estimate"]], "pgmpy.factors.continuous": [[44, 1, 0, "-", "discretize"]], "pgmpy.factors.continuous.discretize": [[44, 0, 1, "", "BaseDiscretizer"], [44, 0, 1, "", "RoundingDiscretizer"], [44, 0, 1, "", "UnbiasedDiscretizer"]], "pgmpy.factors.continuous.discretize.BaseDiscretizer": [[44, 2, 1, "", "get_discrete_values"], [44, 2, 1, "", "get_labels"]], "pgmpy.factors.continuous.discretize.RoundingDiscretizer": [[44, 2, 1, "", "get_discrete_values"]], "pgmpy.factors.continuous.discretize.UnbiasedDiscretizer": [[44, 2, 1, "", "get_discrete_values"], [44, 2, 1, "", "get_labels"]], "pgmpy.factors.discrete": [[43, 1, 0, "-", "CPD"], [43, 1, 0, "-", "DiscreteFactor"], [43, 1, 0, "-", "JointProbabilityDistribution"]], "pgmpy.factors.discrete.CPD": [[43, 0, 1, "", "TabularCPD"]], "pgmpy.factors.discrete.CPD.TabularCPD": [[43, 2, 1, "", "copy"], [43, 2, 1, "", "get_evidence"], [43, 2, 1, "", "get_random"], [43, 2, 1, "", "get_values"], [43, 2, 1, "", "marginalize"], [43, 2, 1, "", "normalize"], [43, 2, 1, "", "reduce"], [43, 2, 1, "", "reorder_parents"], [43, 2, 1, "", "to_csv"], [43, 2, 1, "", "to_factor"]], "pgmpy.factors.discrete.DiscreteFactor": [[43, 0, 1, "", "DiscreteFactor"], [43, 0, 1, "", "State"]], "pgmpy.factors.discrete.DiscreteFactor.DiscreteFactor": [[43, 2, 1, "", "assignment"], [43, 2, 1, "", "copy"], [43, 2, 1, "", "divide"], [43, 2, 1, "", "get_cardinality"], [43, 2, 1, "", "get_value"], [43, 2, 1, "", "identity_factor"], [43, 2, 1, "", "is_valid_cpd"], [43, 2, 1, "", "marginalize"], [43, 2, 1, "", "maximize"], [43, 2, 1, "", "normalize"], [43, 2, 1, "", "product"], [43, 2, 1, "", "reduce"], [43, 2, 1, "", "sample"], [43, 2, 1, "", "scope"], [43, 2, 1, "", "set_value"], [43, 2, 1, "", "sum"]], "pgmpy.factors.discrete.DiscreteFactor.State": [[43, 4, 1, "", "state"], [43, 4, 1, "", "var"]], "pgmpy.factors.discrete.JointProbabilityDistribution": [[43, 0, 1, "", "JointProbabilityDistribution"]], "pgmpy.factors.discrete.JointProbabilityDistribution.JointProbabilityDistribution": [[43, 2, 1, "", "check_independence"], [43, 2, 1, "", "conditional_distribution"], [43, 2, 1, "", "copy"], [43, 2, 1, "", "get_independencies"], [43, 2, 1, "", "is_imap"], [43, 2, 1, "", "marginal_distribution"], [43, 2, 1, "", "minimal_imap"], [43, 2, 1, "", "to_factor"]], "pgmpy.inference.ApproxInference": [[0, 0, 1, "", "ApproxInference"]], "pgmpy.inference.ApproxInference.ApproxInference": [[0, 2, 1, "", "get_distribution"], [0, 2, 1, "", "query"]], "pgmpy.inference.CausalInference": [[21, 0, 1, "", "CausalInference"]], "pgmpy.inference.CausalInference.CausalInference": [[21, 2, 1, "", "estimate_ate"], [21, 2, 1, "", "get_all_backdoor_adjustment_sets"], [21, 2, 1, "", "get_all_frontdoor_adjustment_sets"], [21, 2, 1, "", "get_minimal_adjustment_set"], [21, 2, 1, "", "get_proper_backdoor_graph"], [21, 2, 1, "", "is_valid_adjustment_set"], [21, 2, 1, "", "is_valid_backdoor_adjustment_set"], [21, 2, 1, "", "is_valid_frontdoor_adjustment_set"], [21, 2, 1, "", "query"]], "pgmpy.inference": [[25, 1, 0, "-", "EliminationOrder"], [22, 1, 0, "-", "dbn_inference"], [24, 1, 0, "-", "mplp"]], "pgmpy.inference.EliminationOrder": [[25, 0, 1, "", "BaseEliminationOrder"], [25, 0, 1, "", "MinFill"], [25, 0, 1, "", "MinNeighbors"], [25, 0, 1, "", "MinWeight"], [25, 0, 1, "", "WeightedMinFill"]], "pgmpy.inference.EliminationOrder.BaseEliminationOrder": [[25, 2, 1, "", "cost"], [25, 2, 1, "", "fill_in_edges"], [25, 2, 1, "", "get_elimination_order"]], "pgmpy.inference.EliminationOrder.MinFill": [[25, 2, 1, "", "cost"]], "pgmpy.inference.EliminationOrder.MinNeighbors": [[25, 2, 1, "", "cost"]], "pgmpy.inference.EliminationOrder.MinWeight": [[25, 2, 1, "", "cost"]], "pgmpy.inference.EliminationOrder.WeightedMinFill": [[25, 2, 1, "", "cost"]], "pgmpy.inference.ExactInference": [[19, 0, 1, "", "BeliefPropagation"], [20, 0, 1, "", "BeliefPropagationWithMessagePassing"], [25, 0, 1, "", "VariableElimination"]], "pgmpy.inference.ExactInference.BeliefPropagation": [[19, 2, 1, "", "calibrate"], [19, 2, 1, "", "get_clique_beliefs"], [19, 2, 1, "", "get_cliques"], [19, 2, 1, "", "get_sepset_beliefs"], [19, 2, 1, "", "map_query"], [19, 2, 1, "", "max_calibrate"], [19, 2, 1, "", "query"]], "pgmpy.inference.ExactInference.BeliefPropagationWithMessagePassing": [[20, 2, 1, "", "calc_factor_node_message"], [20, 2, 1, "", "calc_variable_node_message"], [20, 2, 1, "", "query"]], "pgmpy.inference.ExactInference.VariableElimination": [[25, 2, 1, "", "induced_graph"], [25, 2, 1, "", "induced_width"], [25, 2, 1, "", "map_query"], [25, 2, 1, "", "max_marginal"], [25, 2, 1, "", "query"]], "pgmpy.inference.dbn_inference": [[22, 0, 1, "", "DBNInference"]], "pgmpy.inference.dbn_inference.DBNInference": [[22, 2, 1, "", "backward_inference"], [22, 2, 1, "", "forward_inference"], [22, 2, 1, "", "query"]], "pgmpy.inference.mplp": [[24, 0, 1, "", "Mplp"]], "pgmpy.inference.mplp.Mplp": [[24, 0, 1, "", "Cluster"], [24, 2, 1, "", "find_triangles"], [24, 2, 1, "", "get_integrality_gap"], [24, 2, 1, "", "map_query"]], "pgmpy.metrics.bn_inference": [[23, 0, 1, "", "BayesianModelProbability"]], "pgmpy.metrics.bn_inference.BayesianModelProbability": [[23, 2, 1, "", "log_probability"], [23, 2, 1, "", "score"]], "pgmpy.metrics": [[23, 3, 1, "", "correlation_score"], [23, 3, 1, "", "log_likelihood_score"], [46, 1, 0, "-", "metrics"], [23, 3, 1, "", "structure_score"]], "pgmpy.metrics.metrics": [[46, 3, 1, "", "correlation_score"], [46, 3, 1, "", "fisher_c"], [46, 3, 1, "", "implied_cis"], [46, 3, 1, "", "log_likelihood_score"], [46, 3, 1, "", "structure_score"]], "pgmpy.models": [[48, 1, 0, "-", "BayesianNetwork"], [49, 1, 0, "-", "ClusterGraph"], [50, 1, 0, "-", "DynamicBayesianNetwork"], [51, 1, 0, "-", "FactorGraph"], [52, 1, 0, "-", "JunctionTree"], [53, 1, 0, "-", "MarkovChain"], [54, 1, 0, "-", "MarkovNetwork"], [55, 1, 0, "-", "NaiveBayes"], [56, 1, 0, "-", "NoisyOrModel"], [57, 1, 0, "-", "SEM"]], "pgmpy.models.BayesianNetwork": [[48, 0, 1, "", "BayesianNetwork"]], "pgmpy.models.BayesianNetwork.BayesianNetwork": [[48, 2, 1, "", "add_cpds"], [48, 2, 1, "", "add_edge"], [48, 2, 1, "", "check_model"], [48, 2, 1, "", "copy"], [48, 2, 1, "", "do"], [48, 2, 1, "", "fit"], [48, 2, 1, "", "fit_update"], [48, 2, 1, "", "get_cardinality"], [48, 2, 1, "", "get_cpds"], [48, 2, 1, "", "get_factorized_product"], [48, 2, 1, "", "get_markov_blanket"], [48, 2, 1, "", "get_random"], [48, 2, 1, "", "get_random_cpds"], [48, 2, 1, "", "get_state_probability"], [48, 2, 1, "", "is_imap"], [48, 2, 1, "", "load"], [48, 2, 1, "", "predict"], [48, 2, 1, "", "predict_probability"], [48, 2, 1, "", "remove_cpds"], [48, 2, 1, "", "remove_node"], [48, 2, 1, "", "remove_nodes_from"], [48, 2, 1, "", "save"], [48, 2, 1, "", "simulate"], [48, 5, 1, "", "states"], [48, 2, 1, "", "to_junction_tree"], [48, 2, 1, "", "to_markov_model"]], "pgmpy.models.ClusterGraph": [[49, 0, 1, "", "ClusterGraph"]], "pgmpy.models.ClusterGraph.ClusterGraph": [[49, 2, 1, "", "add_edge"], [49, 2, 1, "", "add_factors"], [49, 2, 1, "", "add_node"], [49, 2, 1, "", "add_nodes_from"], [49, 2, 1, "", "check_model"], [49, 5, 1, "", "clique_beliefs"], [49, 2, 1, "", "copy"], [49, 2, 1, "", "get_cardinality"], [49, 2, 1, "", "get_factors"], [49, 2, 1, "", "get_partition_function"], [49, 2, 1, "", "remove_factors"]], "pgmpy.models.DynamicBayesianNetwork": [[50, 0, 1, "", "DynamicBayesianNetwork"], [50, 0, 1, "", "DynamicNode"]], "pgmpy.models.DynamicBayesianNetwork.DynamicBayesianNetwork": [[50, 2, 1, "", "active_trail_nodes"], [50, 2, 1, "", "add_cpds"], [50, 2, 1, "", "add_edge"], [50, 2, 1, "", "add_edges_from"], [50, 2, 1, "", "add_node"], [50, 2, 1, "", "add_nodes_from"], [50, 2, 1, "", "add_weighted_edges_from"], [50, 5, 1, "", "adj"], [50, 2, 1, "", "adjacency"], [50, 4, 1, "", "adjlist_inner_dict_factory"], [50, 4, 1, "", "adjlist_outer_dict_factory"], [50, 2, 1, "", "check_model"], [50, 2, 1, "", "clear"], [50, 2, 1, "", "clear_edges"], [50, 2, 1, "", "copy"], [50, 5, 1, "", "degree"], [50, 2, 1, "", "do"], [50, 4, 1, "", "edge_attr_dict_factory"], [50, 2, 1, "", "edge_subgraph"], [50, 5, 1, "", "edges"], [50, 2, 1, "", "fit"], [50, 2, 1, "", "get_ancestral_graph"], [50, 2, 1, "", "get_children"], [50, 2, 1, "", "get_constant_bn"], [50, 2, 1, "", "get_cpds"], [50, 2, 1, "", "get_edge_data"], [50, 2, 1, "", "get_immoralities"], [50, 2, 1, "", "get_independencies"], [50, 2, 1, "", "get_inter_edges"], [50, 2, 1, "", "get_interface_nodes"], [50, 2, 1, "", "get_intra_edges"], [50, 2, 1, "", "get_leaves"], [50, 2, 1, "", "get_markov_blanket"], [50, 2, 1, "", "get_parents"], [50, 2, 1, "", "get_random"], [50, 2, 1, "", "get_roots"], [50, 2, 1, "", "get_slice_nodes"], [50, 4, 1, "", "graph_attr_dict_factory"], [50, 2, 1, "", "has_edge"], [50, 2, 1, "", "has_node"], [50, 2, 1, "", "has_predecessor"], [50, 2, 1, "", "has_successor"], [50, 5, 1, "", "in_degree"], [50, 2, 1, "", "in_degree_iter"], [50, 5, 1, "", "in_edges"], [50, 2, 1, "", "initialize_initial_state"], [50, 2, 1, "", "is_dconnected"], [50, 2, 1, "", "is_directed"], [50, 2, 1, "", "is_iequivalent"], [50, 2, 1, "", "is_multigraph"], [50, 2, 1, "", "local_independencies"], [50, 2, 1, "", "minimal_dseparator"], [50, 2, 1, "", "moralize"], [50, 5, 1, "", "name"], [50, 2, 1, "", "nbunch_iter"], [50, 2, 1, "", "neighbors"], [50, 4, 1, "", "node_attr_dict_factory"], [50, 4, 1, "", "node_dict_factory"], [50, 5, 1, "", "nodes"], [50, 2, 1, "", "number_of_edges"], [50, 2, 1, "", "number_of_nodes"], [50, 2, 1, "", "order"], [50, 5, 1, "", "out_degree"], [50, 2, 1, "", "out_degree_iter"], [50, 5, 1, "", "out_edges"], [50, 5, 1, "", "pred"], [50, 2, 1, "", "predecessors"], [50, 2, 1, "", "remove_cpds"], [50, 2, 1, "", "remove_edge"], [50, 2, 1, "", "remove_edges_from"], [50, 2, 1, "", "remove_node"], [50, 2, 1, "", "remove_nodes_from"], [50, 2, 1, "", "reverse"], [50, 2, 1, "", "simulate"], [50, 2, 1, "", "size"], [50, 2, 1, "", "subgraph"], [50, 5, 1, "", "succ"], [50, 2, 1, "", "successors"], [50, 2, 1, "", "to_daft"], [50, 2, 1, "", "to_directed"], [50, 2, 1, "", "to_directed_class"], [50, 2, 1, "", "to_graphviz"], [50, 2, 1, "", "to_undirected"], [50, 2, 1, "", "to_undirected_class"], [50, 2, 1, "", "update"]], "pgmpy.models.DynamicBayesianNetwork.DynamicNode": [[50, 4, 1, "", "node"], [50, 4, 1, "", "time_slice"], [50, 2, 1, "", "to_tuple"]], "pgmpy.models.FactorGraph": [[51, 0, 1, "", "FactorGraph"]], "pgmpy.models.FactorGraph.FactorGraph": [[51, 2, 1, "", "add_edge"], [51, 2, 1, "", "add_factors"], [51, 2, 1, "", "check_model"], [51, 2, 1, "", "copy"], [51, 2, 1, "", "get_cardinality"], [51, 2, 1, "", "get_factor_nodes"], [51, 2, 1, "", "get_factors"], [51, 2, 1, "", "get_partition_function"], [51, 2, 1, "", "get_point_mass_message"], [51, 2, 1, "", "get_uniform_message"], [51, 2, 1, "", "get_variable_nodes"], [51, 2, 1, "", "remove_factors"], [51, 2, 1, "", "to_junction_tree"], [51, 2, 1, "", "to_markov_model"]], "pgmpy.models.JunctionTree": [[52, 0, 1, "", "JunctionTree"]], "pgmpy.models.JunctionTree.JunctionTree": [[52, 2, 1, "", "add_edge"], [52, 2, 1, "", "check_model"], [52, 2, 1, "", "copy"], [52, 5, 1, "", "states"]], "pgmpy.models.MarkovChain": [[53, 0, 1, "", "MarkovChain"]], "pgmpy.models.MarkovChain.MarkovChain": [[53, 2, 1, "", "add_transition_model"], [53, 2, 1, "", "add_variable"], [53, 2, 1, "", "add_variables_from"], [53, 2, 1, "", "copy"], [53, 2, 1, "", "generate_sample"], [53, 2, 1, "", "is_stationarity"], [53, 2, 1, "", "prob_from_sample"], [53, 2, 1, "", "random_state"], [53, 2, 1, "", "sample"], [53, 2, 1, "", "set_start_state"]], "pgmpy.models.MarkovNetwork": [[54, 0, 1, "", "MarkovNetwork"]], "pgmpy.models.MarkovNetwork.MarkovNetwork": [[54, 2, 1, "", "add_edge"], [54, 2, 1, "", "add_factors"], [54, 2, 1, "", "check_model"], [54, 2, 1, "", "copy"], [54, 2, 1, "", "get_cardinality"], [54, 2, 1, "", "get_factors"], [54, 2, 1, "", "get_local_independencies"], [54, 2, 1, "", "get_partition_function"], [54, 2, 1, "", "markov_blanket"], [54, 2, 1, "", "remove_factors"], [54, 5, 1, "", "states"], [54, 2, 1, "", "to_bayesian_model"], [54, 2, 1, "", "to_factor_graph"], [54, 2, 1, "", "to_junction_tree"], [54, 2, 1, "", "triangulate"]], "pgmpy.models.NaiveBayes": [[55, 0, 1, "", "NaiveBayes"]], "pgmpy.models.NaiveBayes.NaiveBayes": [[55, 2, 1, "", "active_trail_nodes"], [55, 2, 1, "", "add_edge"], [55, 2, 1, "", "add_edges_from"], [55, 2, 1, "", "fit"], [55, 2, 1, "", "local_independencies"]], "pgmpy.models.NoisyOrModel": [[56, 0, 1, "", "NoisyOrModel"]], "pgmpy.models.NoisyOrModel.NoisyOrModel": [[56, 2, 1, "", "add_variables"], [56, 2, 1, "", "del_variables"]], "pgmpy.models.SEM": [[57, 0, 1, "", "SEM"], [57, 0, 1, "", "SEMAlg"], [57, 0, 1, "", "SEMGraph"]], "pgmpy.models.SEM.SEM": [[57, 2, 1, "", "fit"], [57, 2, 1, "", "from_RAM"], [57, 2, 1, "", "from_graph"], [57, 2, 1, "", "from_lavaan"], [57, 2, 1, "", "from_lisrel"], [57, 4, 1, "", "model"]], "pgmpy.models.SEM.SEMAlg": [[57, 2, 1, "", "generate_samples"], [57, 2, 1, "", "set_params"], [57, 2, 1, "", "to_SEMGraph"]], "pgmpy.models.SEM.SEMGraph": [[57, 2, 1, "", "active_trail_nodes"], [57, 4, 1, "", "err_graph"], [57, 4, 1, "", "full_graph_struct"], [57, 2, 1, "", "get_conditional_ivs"], [57, 2, 1, "", "get_ivs"], [57, 2, 1, "", "get_scaling_indicators"], [57, 4, 1, "", "graph"], [57, 4, 1, "", "latents"], [57, 2, 1, "", "moralize"], [57, 4, 1, "", "observed"], [57, 2, 1, "", "to_lisrel"], [57, 2, 1, "", "to_standard_lisrel"]], "pgmpy.readwrite": [[65, 1, 0, "-", "BIF"], [66, 1, 0, "-", "PomdpX"], [67, 1, 0, "-", "UAI"], [69, 1, 0, "-", "XMLBIF"], [68, 1, 0, "-", "XMLBeliefNetwork"]], "pgmpy.readwrite.BIF": [[65, 0, 1, "", "BIFReader"], [65, 0, 1, "", "BIFWriter"]], "pgmpy.readwrite.BIF.BIFReader": [[65, 2, 1, "", "get_edges"], [65, 2, 1, "", "get_model"], [65, 2, 1, "", "get_network_name"], [65, 2, 1, "", "get_parents"], [65, 2, 1, "", "get_probability_grammar"], [65, 2, 1, "", "get_property"], [65, 2, 1, "", "get_states"], [65, 2, 1, "", "get_values"], [65, 2, 1, "", "get_variable_grammar"], [65, 2, 1, "", "get_variables"]], "pgmpy.readwrite.BIF.BIFWriter": [[65, 2, 1, "", "BIF_templates"], [65, 2, 1, "", "get_cpds"], [65, 2, 1, "", "get_parents"], [65, 2, 1, "", "get_properties"], [65, 2, 1, "", "get_states"], [65, 2, 1, "", "get_variables"], [65, 2, 1, "", "write_bif"]], "pgmpy.readwrite.PomdpX": [[66, 0, 1, "", "PomdpXReader"], [66, 0, 1, "", "PomdpXWriter"]], "pgmpy.readwrite.PomdpX.PomdpXReader": [[66, 2, 1, "", "get_description"], [66, 2, 1, "", "get_discount"], [66, 2, 1, "", "get_initial_beliefs"], [66, 2, 1, "", "get_obs_function"], [66, 2, 1, "", "get_parameter"], [66, 2, 1, "", "get_parameter_dd"], [66, 2, 1, "", "get_parameter_tbl"], [66, 2, 1, "", "get_reward_function"], [66, 2, 1, "", "get_state_transition_function"], [66, 2, 1, "", "get_variables"]], "pgmpy.readwrite.PomdpX.PomdpXWriter": [[66, 2, 1, "", "add_conditions"], [66, 2, 1, "", "add_initial_belief"], [66, 2, 1, "", "add_obs_function"], [66, 2, 1, "", "add_parameter_dd"], [66, 2, 1, "", "add_reward_function"], [66, 2, 1, "", "add_state_transition_function"], [66, 2, 1, "", "get_variables"], [66, 2, 1, "", "indent"]], "pgmpy.readwrite.UAI": [[67, 0, 1, "", "UAIReader"], [67, 0, 1, "", "UAIWriter"]], "pgmpy.readwrite.UAI.UAIReader": [[67, 2, 1, "", "get_domain"], [67, 2, 1, "", "get_edges"], [67, 2, 1, "", "get_grammar"], [67, 2, 1, "", "get_model"], [67, 2, 1, "", "get_network_type"], [67, 2, 1, "", "get_tables"], [67, 2, 1, "", "get_variables"]], "pgmpy.readwrite.UAI.UAIWriter": [[67, 2, 1, "", "get_domain"], [67, 2, 1, "", "get_functions"], [67, 2, 1, "", "get_nodes"], [67, 2, 1, "", "get_tables"], [67, 2, 1, "", "write_uai"]], "pgmpy.readwrite.XMLBIF": [[69, 0, 1, "", "XMLBIFReader"], [69, 0, 1, "", "XMLBIFWriter"]], "pgmpy.readwrite.XMLBIF.XMLBIFReader": [[69, 2, 1, "", "get_edges"], [69, 2, 1, "", "get_model"], [69, 2, 1, "", "get_parents"], [69, 2, 1, "", "get_property"], [69, 2, 1, "", "get_states"], [69, 2, 1, "", "get_values"], [69, 2, 1, "", "get_variables"]], "pgmpy.readwrite.XMLBIF.XMLBIFWriter": [[69, 2, 1, "", "get_definition"], [69, 2, 1, "", "get_properties"], [69, 2, 1, "", "get_states"], [69, 2, 1, "", "get_values"], [69, 2, 1, "", "get_variables"], [69, 2, 1, "", "indent"], [69, 2, 1, "", "write_xmlbif"]], "pgmpy.readwrite.XMLBeliefNetwork": [[68, 0, 1, "", "XBNReader"], [68, 0, 1, "", "XBNWriter"]], "pgmpy.readwrite.XMLBeliefNetwork.XBNReader": [[68, 2, 1, "", "get_analysisnotebook_values"], [68, 2, 1, "", "get_bnmodel_name"], [68, 2, 1, "", "get_distributions"], [68, 2, 1, "", "get_edges"], [68, 2, 1, "", "get_model"], [68, 2, 1, "", "get_static_properties"], [68, 2, 1, "", "get_variables"]], "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter": [[68, 2, 1, "", "indent"], [68, 2, 1, "", "set_analysisnotebook"], [68, 2, 1, "", "set_bnmodel_name"], [68, 2, 1, "", "set_distributions"], [68, 2, 1, "", "set_edges"], [68, 2, 1, "", "set_static_properties"], [68, 2, 1, "", "set_variables"], [68, 2, 1, "", "write_xbn"]], "pgmpy.sampling.Sampling": [[2, 0, 1, "", "BayesianModelSampling"], [3, 0, 1, "", "GibbsSampling"]], "pgmpy.sampling.Sampling.BayesianModelSampling": [[2, 2, 1, "", "forward_sample"], [2, 2, 1, "", "likelihood_weighted_sample"], [2, 2, 1, "", "rejection_sample"]], "pgmpy.sampling.Sampling.GibbsSampling": [[3, 2, 1, "", "generate_sample"], [3, 2, 1, "", "sample"]]}, "objtypes": {"0": "py:class", "1": "py:module", "2": "py:method", "3": "py:function", "4": "py:attribute", "5": "py:property"}, "objnames": {"0": ["py", "class", "Python class"], "1": ["py", "module", "Python module"], "2": ["py", "method", "Python method"], "3": ["py", "function", "Python function"], "4": ["py", "attribute", "Python attribute"], "5": ["py", "property", "Python property"]}, "titleterms": {"approxim": [0, 1, 13], "infer": [0, 1, 8, 9, 12, 13, 18, 21, 22, 29, 33], "us": [0, 33, 35, 39, 40, 63], "sampl": [0, 2, 3, 15, 38, 40, 41], "bayesian": [2, 7, 8, 9, 10, 22, 27, 30, 32, 33, 34, 38, 39, 40, 41, 48, 50, 59, 65], "model": [2, 5, 6, 8, 9, 11, 12, 13, 15, 23, 27, 29, 30, 32, 33, 34, 35, 39, 46, 47, 56, 57, 62, 63, 71], "gibb": 3, "base": [4, 5, 7, 14, 79], "structur": [4, 5, 7, 27, 30, 34, 39, 40, 41, 57, 62, 75, 77], "class": [4, 14, 33], "direct": [4, 5], "acycl": [4, 5], "graph": [4, 5, 40, 41, 49, 51], "dag": [4, 5, 7], "partial": [4, 5, 38], "pdag": [4, 5], "cpdag": 4, "introduct": 6, "probabilit": 6, "graphic": [6, 12, 13, 15], "content": 6, "1": [6, 9, 11, 30, 33, 34, 35, 38, 63], "what": [6, 9, 11], "i": [6, 9], "machin": 6, "learn": [6, 7, 8, 34, 35, 39, 40, 41, 75], "2": [6, 9, 30, 33, 34, 35, 38, 63], "differ": 6, "wai": 6, "from": [6, 7, 9, 16, 32, 38, 40, 41], "data": [6, 7, 8, 9, 34, 35, 38, 39, 40, 41, 45], "why": 6, "probabilist": [6, 37], "type": [6, 45], "network": [7, 8, 9, 10, 11, 22, 27, 30, 32, 33, 34, 35, 38, 39, 40, 41, 48, 50, 54], "paramet": [7, 8, 34, 58], "state": 7, "count": 7, "maximum": [7, 61], "likelihood": [7, 61], "estim": [7, 35, 58, 59, 61, 62, 78, 79], "score": [7, 35, 77], "function": 7, "search": [7, 39, 76, 77, 80], "strategi": 7, "constraint": [7, 79], "condit": [7, 29, 79], "independ": [7, 9, 79], "test": [7, 23, 46, 71, 79], "pattern": 7, "construct": 7, "hybrid": 7, "conclus": 7, "refer": [7, 62, 65, 66, 67, 68, 69], "A": 8, "influenc": 8, "energi": 8, "consumpt": 8, "greenhous": 8, "gase": 8, "itali": 8, "lorenzo": 8, "mario": 8, "amorosa": 8, "fundament": 8, "artifici": 8, "intellig": 8, "knowledg": 8, "represent": 8, "mod": 8, "3": [8, 9, 30, 33, 34, 35, 38, 63], "alma": 8, "mater": 8, "studiorum": 8, "universit\u00e0": 8, "di": 8, "bologna": 8, "abstract": 8, "definit": [8, 29], "dataset": 8, "raw": 8, "clean": 8, "discret": [8, 15, 30, 33, 34, 35, 43, 44], "analysi": 8, "ar": [9, 11, 41], "how": 9, "thi": 9, "repres": 9, "joint": [9, 14, 43], "distribut": [9, 14, 15, 32, 43], "over": 9, "variabl": [9, 12, 14, 25], "4": [9, 33, 35, 38], "elimin": [9, 12, 25], "predict": 9, "valu": 9, "new": 9, "point": 9, "5": [9, 33, 38], "other": [9, 17, 27, 40, 41], "method": [9, 15, 27, 44, 50], "causal": [10, 21, 28, 29], "object": [10, 17, 28], "game": [10, 28, 35], "markov": [11, 35, 53, 54], "exact": [12, 18], "cliqu": 12, "tree": [12, 40, 41, 52, 80], "belief": [12, 19, 20], "propag": [12, 19, 20], "parameter": [14, 27, 40, 41, 42], "continu": [14, 15], "factor": [14, 43, 51], "gaussian": [14, 32], "canon": [14, 15], "linear": [14, 32], "cpd": [14, 30, 40], "In": 15, "hamiltonian": 15, "mont": 15, "carlo": 15, "dynam": [15, 22, 50], "": [15, 29], "equat": [15, 17, 57, 62], "euler": 15, "leapfrog": 15, "exampl": [15, 26, 29, 30], "simul": [15, 38], "simpl": 15, "pendulum": 15, "probabl": [15, 43], "algorithm": [15, 40, 45, 79], "pgmpy": [15, 16, 31, 71], "dual": 15, "averag": 15, "No": 15, "u": 15, "turn": 15, "sampler": 15, "support": [15, 17, 45], "coustom": 15, "read": [16, 64], "write": [16, 64], "file": [16, 17, 64], "format": [16, 65], "gener": [16, 30, 32, 34, 39, 40, 41], "workflow": 16, "readwrit": 16, "modul": 16, "markdown": 17, "cell": 17, "automat": 17, "number": 17, "manual": [17, 30], "citat": [17, 45], "code": [17, 71], "tabl": [17, 45], "imag": 17, "svg": 17, "latex": 17, "attach": 17, "html": 17, "element": 17, "onli": 17, "info": [17, 40, 41], "warn": 17, "box": 17, "link": 17, "notebook": [17, 26, 81], "rst": 17, "sphinx": 17, "sourc": 17, "local": 17, "domain": 17, "messag": 20, "pass": 20, "mplp": 24, "order": 25, "basic": 27, "oper": [27, 29], "attribut": 27, "modifi": 27, "associ": 27, "d": 27, "separ": 27, "simpson": 29, "paradox": 29, "t": 29, "do": [29, 33], "specifi": [29, 38], "adjust": 29, "set": 29, "creat": [30, 40, 41], "load": [30, 35], "an": 30, "defin": [30, 33, 34, 35], "random": 30, "complet": 30, "given": 30, "extend": 31, "gbn": 32, "x_1": 32, "x_2": 32, "y": 32, "multivari": 32, "mean": 32, "varianc": 32, "The": 32, "process": 32, "condtion": 32, "p": 32, "x": 32, "step": [33, 34, 35], "initi": 33, "hard": 33, "evid": [33, 38], "virtual": [33, 38], "troubleshoot": 33, "slow": 33, "some": [34, 39], "margin": 35, "who": 35, "win": 35, "footbal": 35, "form": 35, "factorgraph": 35, "maximumlikelihoodestim": 35, "view": 35, "true": 35, "against": 35, "home": 35, "visitor": 35, "monti": 37, "hall": 37, "problem": 37, "descript": 37, "interpretet": 37, "normal": [], "time": [], "variat": [], "soft": 38, "intervent": 38, "pc": [39, 79], "hill": [39, 77], "climb": [39, 77], "chow": 40, "liu": 40, "first": [40, 41], "Then": [40, 41], "add": [40, 41], "our": [40, 41, 71], "next": [40, 41], "final": 40, "appli": 40, "To": [40, 41], "check": [40, 41], "out": [40, 41], "tutori": [40, 41, 81], "more": [40, 41], "augment": 41, "naiv": [41, 55], "bay": [41, 55], "tan": 41, "second": 41, "interact": 41, "between": 41, "featur": 41, "now": 41, "we": 41, "readi": 41, "tabularcpd": 43, "indic": 45, "metric": 46, "cluster": 49, "dbn": 50, "public": 50, "junction": 52, "chain": 53, "noisyor": 56, "sem": 57, "expect": 60, "maxim": 60, "em": 60, "bif": 65, "interchang": 65, "pomdpx": 66, "uai": 67, "xmlbeliefnetwork": 68, "xmlbif": 69, "get": 70, "start": 70, "contribut": 71, "issu": 71, "git": 71, "branch": 71, "fork": 71, "github": 71, "pull": 71, "request": 71, "tip": 71, "guidelin": 71, "discuss": 71, "instal": 73, "requir": 73, "licens": 74, "exhaust": 76, "bdeu": 77, "bic": 77, "k2": 77, "bdsscore": 77, "mmhc": 78, "plot": 63, "pygraphviz": 63, "daft": 63, "networkx": 63, "draw": 63, "standard": 38, "under": 38, "6": 38}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1, "nbsphinx": 4, "sphinx": 57}, "alltitles": {"Approximate Inference Using Sampling": [[0, "approximate-inference-using-sampling"]], "Approximate Inference": [[1, "approximate-inference"]], "Bayesian Model Sampling": [[2, "bayesian-model-sampling"]], "Gibbs Sampling": [[3, "gibbs-sampling"]], "Base Structure Classes": [[4, "base-structure-classes"]], "Directed Acyclic Graph (DAG)": [[4, "module-pgmpy.base.DAG"], [5, "directed-acyclic-graph-dag"]], "Partially Directed Acyclic Graph (PDAG or CPDAG)": [[4, "module-pgmpy.base.PDAG"]], "Base Model Structures": [[5, "base-model-structures"]], "Partial Directed Acyclic Graph (PDAG)": [[5, "partial-directed-acyclic-graph-pdag"]], "Introduction to Probabilitic Graphical Models": [[6, "Introduction-to-Probabilitic-Graphical-Models"]], "Contents": [[6, "Contents"]], "1. What is machine learning": [[6, "1.-What-is-machine-learning"]], "2. Different ways of learning from data": [[6, "2.-Different-ways-of-learning-from-data"]], "Why Probabilistic Graphical Models": [[6, "Why-Probabilistic-Graphical-Models"]], "Types of Graphical Models": [[6, "Types-of-Graphical-Models"]], "Learning Bayesian Networks from Data": [[7, "Learning-Bayesian-Networks-from-Data"]], "Parameter Learning": [[7, "Parameter-Learning"]], "State counts": [[7, "State-counts"]], "Maximum Likelihood Estimation": [[7, "Maximum-Likelihood-Estimation"]], "Bayesian Parameter Estimation": [[7, "Bayesian-Parameter-Estimation"]], "Structure Learning": [[7, "Structure-Learning"], [75, "structure-learning"]], "Scoring functions": [[7, "Scoring-functions"]], "Search strategies": [[7, "Search-strategies"]], "Constraint-based Structure Learning": [[7, "Constraint-based-Structure-Learning"]], "(Conditional) Independence Tests": [[7, "(Conditional)-Independence-Tests"]], "DAG (pattern) construction": [[7, "DAG-(pattern)-construction"]], "Hybrid Structure Learning": [[7, "Hybrid-Structure-Learning"]], "Conclusion": [[7, "Conclusion"]], "References": [[7, "References"]], "A Bayesian Network to model the influence of energy consumption on greenhouse gases in Italy": [[8, "A-Bayesian-Network-to-model-the-influence-of-energy-consumption-on-greenhouse-gases-in-Italy"]], "by Lorenzo Mario Amorosa": [[8, "by-Lorenzo-Mario-Amorosa"]], "Fundamentals of Artificial Intelligence and Knowledge Representation (Mod. 3) - Alma Mater Studiorum Universit\u00e0 di Bologna": [[8, "Fundamentals-of-Artificial-Intelligence-and-Knowledge-Representation-(Mod.-3)---Alma-Mater-Studiorum-Universit\u00e0-di-Bologna"]], "Abstract": [[8, "Abstract"]], "Network definition": [[8, "Network-definition"]], "Datasets": [[8, "Datasets"]], "Raw data": [[8, "Raw-data"]], "Data cleaning": [[8, "Data-cleaning"]], "Data discretization": [[8, "Data-discretization"]], "Learning of network parameters": [[8, "Learning-of-network-parameters"]], "Network analysis": [[8, "Network-analysis"]], "Inferences": [[8, "Inferences"]], "Bayesian Network": [[9, "Bayesian-Network"], [48, "module-pgmpy.models.BayesianNetwork"]], "Bayesian Models": [[9, "Bayesian-Models"]], "1. What are Bayesian Models": [[9, "1.-What-are-Bayesian-Models"]], "2. Independencies in Bayesian Networks": [[9, "2.-Independencies-in-Bayesian-Networks"]], "3. How is this Bayesian Network representing the Joint Distribution over the variables ?": [[9, "3.-How-is-this-Bayesian-Network-representing-the-Joint-Distribution-over-the-variables-?"]], "4. Inference in Bayesian Models": [[9, "4.-Inference-in-Bayesian-Models"]], "Variable Elimination": [[9, "Variable-Elimination"], [12, "Variable-Elimination"], [25, "variable-elimination"]], "Predicting values from new data points": [[9, "Predicting-values-from-new-data-points"]], "5. Other methods for Inference": [[9, "5.-Other-methods-for-Inference"]], "Causal Bayesian Networks": [[10, "Causal-Bayesian-Networks"]], "Objective of the Games": [[10, "Objective-of-the-Games"], [28, "Objective-of-the-Games"]], "Markov Networks": [[11, "Markov-Networks"]], "Markov Models": [[11, "Markov-Models"]], "1. What are Markov Models": [[11, "1.-What-are-Markov-Models"]], "Exact Inference in Graphical Models": [[12, "Exact-Inference-in-Graphical-Models"]], "Inference": [[12, "Inference"]], "Exact Inference": [[12, "Exact-Inference"], [18, "exact-inference"]], "Clique Tree Belief Propagation": [[12, "Clique-Tree-Belief-Propagation"]], "Approximate Inference in Graphical Models": [[13, "Approximate-Inference-in-Graphical-Models"]], "Parameterizing with Continuous Variables": [[14, "Parameterizing-with-Continuous-Variables"]], "Continuous Factors": [[14, "Continuous-Factors"]], "Base Class for Continuous Factors": [[14, "Base-Class-for-Continuous-Factors"]], "Joint Gaussian Distributions": [[14, "Joint-Gaussian-Distributions"]], "Canonical Factors": [[14, "Canonical-Factors"]], "Linear Gaussian CPD": [[14, "Linear-Gaussian-CPD"]], "Reading and Writing from pgmpy file formats": [[16, "Reading-and-Writing-from-pgmpy-file-formats"]], "General WorkFlow of the readwrite module": [[16, "General-WorkFlow-of-the-readwrite-module"]], "Belief Propagation": [[19, "belief-propagation"]], "Belief Propagation with Message Passing": [[20, "belief-propagation-with-message-passing"]], "Causal Inference": [[21, "causal-inference"]], "Dynamic Bayesian Network Inference": [[22, "module-pgmpy.inference.dbn_inference"]], "Model Testing": [[23, "model-testing"]], "MPLP": [[24, "module-pgmpy.inference.mplp"]], "Example Notebooks": [[26, "example-notebooks"]], "Basic Operations on Bayesian Networks": [[27, "Basic-Operations-on-Bayesian-Networks"]], "Attributes of the Model Structure": [[27, "Attributes-of-the-Model-Structure"]], "Modifying the Model Structure": [[27, "Modifying-the-Model-Structure"]], "Modifying associated parameterization": [[27, "Modifying-associated-parameterization"]], "D-Separation": [[27, "D-Separation"]], "Other Methods": [[27, "Other-Methods"]], "Causal Games": [[28, "Causal-Games"]], "Causal Inference Examples": [[29, "Causal-Inference-Examples"]], "Simpson\u2019s paradox": [[29, "Simpson\u2019s-paradox"]], "Model Definition": [[29, "Model-Definition"]], "Inference conditioning on T": [[29, "Inference-conditioning-on-T"]], "Inference with do-operation on T": [[29, "Inference-with-do-operation-on-T"]], "Specifying adjustment sets": [[29, "Specifying-adjustment-sets"]], "Creating Discrete Bayesian Networks": [[30, "Creating-Discrete-Bayesian-Networks"]], "1. Load an Example Model": [[30, "1.-Load-an-Example-Model"]], "2. Defining the Model Manually": [[30, "2.-Defining-the-Model-Manually"]], "3. Generating a Random Model": [[30, "3.-Generating-a-Random-Model"]], "Generate a completely random model": [[30, "Generate-a-completely-random-model"]], "Generate random CPDs for a given network structure": [[30, "Generate-random-CPDs-for-a-given-network-structure"]], "Extending pgmpy": [[31, "Extending-pgmpy"]], "Linear Gaussian Bayesian Networks (GBNs)": [[32, "Linear-Gaussian-Bayesian-Networks-(GBNs)"]], "Generate x_1 x_2 and Y from a Multivariate Gaussian Distribution with a Mean and a Variance.": [[32, "Generate-x_1-x_2-and-Y-from-a-Multivariate-Gaussian-Distribution-with-a-Mean-and-a-Variance."]], "Linear Gaussian Models - The Process": [[32, "Linear-Gaussian-Models---The-Process"]], "The Condtional Distribution p(Y|X)": [[32, "The-Condtional-Distribution-p(Y|X)"]], "Inference in Discrete Bayesian Network": [[33, "Inference-in-Discrete-Bayesian-Network"]], "Step 1: Define the model.": [[33, "Step-1:-Define-the-model."]], "Step 2: Initialize the inference class": [[33, "Step-2:-Initialize-the-inference-class"]], "Step 3: Doing Inference using hard evidence": [[33, "Step-3:-Doing-Inference-using-hard-evidence"]], "Step 5: Inference using virtual evidence": [[33, "Step-5:-Inference-using-virtual-evidence"]], "Step 4: Troubleshooting for slow inference": [[33, "Step-4:-Troubleshooting-for-slow-inference"]], "Parameter Learning in Discrete Bayesian Networks": [[34, "Parameter-Learning-in-Discrete-Bayesian-Networks"]], "Step 1: Generate some data": [[34, "Step-1:-Generate-some-data"]], "Step 2: Define a model structure": [[34, "Step-2:-Define-a-model-structure"]], "Step 3: Learning the model parameters": [[34, "Step-3:-Learning-the-model-parameters"]], "Marginal Learning in Discrete Markov Networks": [[35, "Marginal-Learning-in-Discrete-Markov-Networks"]], "Modeling who wins a Football game": [[35, "Modeling-who-wins-a-Football-game"]], "Step 1: Load the games data and form a FactorGraph": [[35, "Step-1:-Load-the-games-data-and-form-a-FactorGraph"]], "Step 2: Define a model using MaximumLikelihoodEstimator": [[35, "Step-2:-Define-a-model-using-MaximumLikelihoodEstimator"]], "Step 3: Learn the marginals": [[35, "Step-3:-Learn-the-marginals"]], "Step 4: View the true marginals against estimated marginals": [[35, "Step-4:-View-the-true-marginals-against-estimated-marginals"]], "Modeling the home & visitor scores": [[35, "Modeling-the-home-&-visitor-scores"]], "Monty Hall Problem": [[37, "Monty-Hall-Problem"]], "Problem Description:": [[37, "Problem-Description:"]], "Probabilistic Interpretetion:": [[37, "Probabilistic-Interpretetion:"]], "Structure Learning in Bayesian Networks": [[39, "Structure-Learning-in-Bayesian-Networks"]], "Generate some data": [[39, "Generate-some-data"]], "Learn the model structure using PC": [[39, "Learn-the-model-structure-using-PC"]], "Learn the model structure using Hill-Climb Search": [[39, "Learn-the-model-structure-using-Hill-Climb-Search"]], "Learning Tree Structure from Data using the Chow-Liu Algorithm": [[40, "Learning-Tree-Structure-from-Data-using-the-Chow-Liu-Algorithm"]], "First, create a tree graph": [[40, "First,-create-a-tree-graph"]], "Then, add CPDs to our tree to create a Bayesian network": [[40, "Then,-add-CPDs-to-our-tree-to-create-a-Bayesian-network"]], "Next, generate sample data from our tree Bayesian network": [[40, "Next,-generate-sample-data-from-our-tree-Bayesian-network"]], "Finally, apply the Chow-Liu algorithm to learn the tree graph from sample data": [[40, "Finally,-apply-the-Chow-Liu-algorithm-to-learn-the-tree-graph-from-sample-data"]], "To parameterize the learned graph from data, check out the other tutorials for more info": [[40, "To-parameterize-the-learned-graph-from-data,-check-out-the-other-tutorials-for-more-info"], [41, "To-parameterize-the-learned-graph-from-data,-check-out-the-other-tutorials-for-more-info"]], "Learning Tree-augmented Naive Bayes (TAN) Structure from Data": [[41, "Learning-Tree-augmented-Naive-Bayes-(TAN)-Structure-from-Data"]], "First, create a Naive Bayes graph": [[41, "First,-create-a-Naive-Bayes-graph"]], "Second, add interaction between the features": [[41, "Second,-add-interaction-between-the-features"]], "Then, parameterize our graph to create a Bayesian network": [[41, "Then,-parameterize-our-graph-to-create-a-Bayesian-network"]], "Next, generate sample data from our Bayesian network": [[41, "Next,-generate-sample-data-from-our-Bayesian-network"]], "Now we are ready to learn the TAN structure from sample data": [[41, "Now-we-are-ready-to-learn-the-TAN-structure-from-sample-data"]], "Discrete": [[43, "discrete"]], "TabularCPD": [[43, "module-pgmpy.factors.discrete.CPD"]], "Discrete Factor": [[43, "module-pgmpy.factors.discrete.DiscreteFactor"]], "Joint Probability Distribution": [[43, "module-pgmpy.factors.discrete.JointProbabilityDistribution"]], "Discretizing Methods": [[44, "module-pgmpy.factors.continuous.discretize"]], "Models": [[47, "models"]], "Cluster Graph": [[49, "module-pgmpy.models.ClusterGraph"]], "Dynamic Bayesian Network (DBN)": [[50, "module-pgmpy.models.DynamicBayesianNetwork"]], "Public Methods": [[50, "public-methods"]], "Factor Graph": [[51, "module-pgmpy.models.FactorGraph"]], "Junction Tree": [[52, "module-pgmpy.models.JunctionTree"]], "Markov Chain": [[53, "module-pgmpy.models.MarkovChain"]], "Markov Network": [[54, "module-pgmpy.models.MarkovNetwork"]], "NoisyOr Model": [[56, "module-pgmpy.models.NoisyOrModel"]], "Structural Equation Models (SEM)": [[57, "module-pgmpy.models.SEM"]], "Parameter Estimation": [[58, "parameter-estimation"]], "Bayesian Estimator": [[59, "bayesian-estimator"]], "Expectation Maximization (EM)": [[60, "expectation-maximization-em"]], "Maximum Likelihood Estimator": [[61, "maximum-likelihood-estimator"]], "Structural Equation Model Estimators": [[62, "structural-equation-model-estimators"]], "Reference": [[62, "reference"], [66, "reference"], [65, "reference"], [67, "reference"], [68, "reference"], [69, "reference"], [69, "id1"]], "Reading/Writing to File": [[64, "reading-writing-to-file"]], "PomdpX": [[66, "module-pgmpy.readwrite.PomdpX"]], "Getting Started": [[70, "getting-started"]], "Contributing to pgmpy": [[71, "contributing-to-pgmpy"]], "Code and Issues": [[71, "code-and-issues"]], "Git and our Branching model": [[71, "git-and-our-branching-model"]], "Git": [[71, "git"]], "Forks + GitHub Pull requests": [[71, "forks-github-pull-requests"]], "Tips": [[71, "tips"]], "Code Guidelines": [[71, "code-guidelines"]], "Tests": [[71, "tests"]], "Discussion": [[71, "discussion"]], "Installation": [[73, "installation"]], "Requirements": [[73, "requirements"]], "License": [[74, "license"]], "Exhaustive Search": [[76, "exhaustive-search"]], "Hill Climb Search": [[77, "hill-climb-search"]], "Structure Score": [[77, "structure-score"]], "BDeu Score": [[77, "bdeu-score"]], "Bic Score": [[77, "bic-score"]], "K2 Score": [[77, "k2-score"]], "BDsScore": [[77, "bdsscore"]], "Mmhc Estimator": [[78, "mmhc-estimator"]], "PC (Constraint-Based Estimator)": [[79, "pc-constraint-based-estimator"]], "Conditional Independence Tests for PC algorithm": [[79, "module-pgmpy.estimators.CITests"]], "Tree Search": [[80, "tree-search"]], "Tutorial Notebooks": [[81, "tutorial-notebooks"]], "Sampling In Continuous Graphical Models": [[15, "Sampling-In-Continuous-Graphical-Models"]], "Hamiltonian Monte Carlo": [[15, "Hamiltonian-Monte-Carlo"]], "Hamiltonian Dynamics": [[15, "Hamiltonian-Dynamics"]], "Discretizing Hamiltonian\u2019s Equations": [[15, "Discretizing-Hamiltonian\u2019s-Equations"]], "Euler\u2019s Method": [[15, "Euler\u2019s-Method"]], "Leapfrog Method": [[15, "Leapfrog-Method"]], "Example: Simulating Hamiltonian dynamics of a simple pendulum": [[15, "Example:-Simulating-Hamiltonian-dynamics-of-a-simple-pendulum"]], "Hamiltonian and Probability: Canonical Distributions": [[15, "Hamiltonian-and-Probability:-Canonical-Distributions"]], "Hamiltonian Monte Carlo Algorithm": [[15, "Hamiltonian-Monte-Carlo-Algorithm"]], "Hamiltonian Monte Carlo in pgmpy": [[15, "Hamiltonian-Monte-Carlo-in-pgmpy"]], "Hamiltonian Monte Carlo with dual averaging": [[15, "Hamiltonian-Monte-Carlo-with-dual-averaging"]], "No-U-Turn Sampler": [[15, "No-U-Turn-Sampler"]], "No-U-Turn Sampler with dual averaging": [[15, "No-U-Turn-Sampler-with-dual-averaging"]], "Support for coustom Models": [[15, "Support-for-coustom-Models"]], "Markdown Cells": [[17, "Markdown-Cells"]], "Equations": [[17, "Equations"]], "Automatic Equation Numbering": [[17, "Automatic-Equation-Numbering"]], "Manual Equation Numbering": [[17, "Manual-Equation-Numbering"]], "Citations": [[17, "Citations"]], "Code": [[17, "Code"]], "Tables": [[17, "Tables"]], "Images": [[17, "Images"]], "SVG support for LaTeX": [[17, "SVG-support-for-LaTeX"]], "Cell Attachments": [[17, "Cell-Attachments"]], "HTML Elements (HTML only)": [[17, "HTML-Elements-(HTML-only)"]], "Info/Warning Boxes": [[17, "Info/Warning-Boxes"]], "Links to Other Notebooks": [[17, "Links-to-Other-Notebooks"]], "Links to *.rst Files (and Other Sphinx Source Files)": [[17, "Links-to-*.rst-Files-(and-Other-Sphinx-Source-Files)"]], "Links to Local Files": [[17, "Links-to-Local-Files"]], "Links to Domain Objects": [[17, "Links-to-Domain-Objects"]], "Elimination Ordering": [[25, "module-pgmpy.inference.EliminationOrder"]], "Simulating Data From Bayesian Networks": [[38, "Simulating-Data-From-Bayesian-Networks"]], "1. Standard simulation": [[38, "1.-Standard-simulation"]], "2. Simulation under specified evidence": [[38, "2.-Simulation-under-specified-evidence"]], "3. Simulation under soft/virtual evidence": [[38, "3.-Simulation-under-soft/virtual-evidence"]], "4. Simulation under specified intervention": [[38, "4.-Simulation-under-specified-intervention"]], "5. Simulation under soft/virtual intervention": [[38, "5.-Simulation-under-soft/virtual-intervention"]], "6. Partial samples": [[38, "6.-Partial-samples"]], "Parameterization": [[42, "parameterization"]], "Supported Data Types": [[45, "supported-data-types"]], "Algorithms": [[45, "algorithms"]], "Citation": [[45, "citation"]], "Indices and tables": [[45, "indices-and-tables"]], "Metrics for testing models": [[46, "module-pgmpy.metrics.metrics"]], "Naive Bayes": [[55, "module-pgmpy.models.NaiveBayes"]], "Plotting Models": [[63, "plotting-models"]], "1. Using pygraphviz": [[63, "using-pygraphviz"]], "2. Using daft": [[63, "using-daft"]], "3. Using networkx.drawing": [[63, "using-networkx-drawing"]], "BIF (Bayesian Interchange Format)": [[65, "module-pgmpy.readwrite.BIF"]], "UAI": [[67, "module-pgmpy.readwrite.UAI"]], "XMLBeliefNetwork": [[68, "module-pgmpy.readwrite.XMLBeliefNetwork"]], "XMLBIF": [[69, "module-pgmpy.readwrite.XMLBIF"]]}, "indexentries": {"baseeliminationorder (class in pgmpy.inference.eliminationorder)": [[25, "pgmpy.inference.EliminationOrder.BaseEliminationOrder"]], "minfill (class in pgmpy.inference.eliminationorder)": [[25, "pgmpy.inference.EliminationOrder.MinFill"]], "minneighbors (class in pgmpy.inference.eliminationorder)": [[25, "pgmpy.inference.EliminationOrder.MinNeighbors"]], "minweight (class in pgmpy.inference.eliminationorder)": [[25, "pgmpy.inference.EliminationOrder.MinWeight"]], "variableelimination (class in pgmpy.inference.exactinference)": [[25, "pgmpy.inference.ExactInference.VariableElimination"]], "weightedminfill (class in pgmpy.inference.eliminationorder)": [[25, "pgmpy.inference.EliminationOrder.WeightedMinFill"]], "cost() (pgmpy.inference.eliminationorder.baseeliminationorder method)": [[25, "pgmpy.inference.EliminationOrder.BaseEliminationOrder.cost"]], "cost() (pgmpy.inference.eliminationorder.minfill method)": [[25, "pgmpy.inference.EliminationOrder.MinFill.cost"]], "cost() (pgmpy.inference.eliminationorder.minneighbors method)": [[25, "pgmpy.inference.EliminationOrder.MinNeighbors.cost"]], "cost() (pgmpy.inference.eliminationorder.minweight method)": [[25, "pgmpy.inference.EliminationOrder.MinWeight.cost"]], "cost() (pgmpy.inference.eliminationorder.weightedminfill method)": [[25, "pgmpy.inference.EliminationOrder.WeightedMinFill.cost"]], "fill_in_edges() (pgmpy.inference.eliminationorder.baseeliminationorder method)": [[25, "pgmpy.inference.EliminationOrder.BaseEliminationOrder.fill_in_edges"]], "get_elimination_order() (pgmpy.inference.eliminationorder.baseeliminationorder method)": [[25, "pgmpy.inference.EliminationOrder.BaseEliminationOrder.get_elimination_order"]], "induced_graph() (pgmpy.inference.exactinference.variableelimination method)": [[25, "pgmpy.inference.ExactInference.VariableElimination.induced_graph"]], "induced_width() (pgmpy.inference.exactinference.variableelimination method)": [[25, "pgmpy.inference.ExactInference.VariableElimination.induced_width"]], "map_query() (pgmpy.inference.exactinference.variableelimination method)": [[25, "pgmpy.inference.ExactInference.VariableElimination.map_query"]], "max_marginal() (pgmpy.inference.exactinference.variableelimination method)": [[25, "pgmpy.inference.ExactInference.VariableElimination.max_marginal"]], "module": [[25, "module-pgmpy.inference.EliminationOrder"], [46, "module-pgmpy.metrics.metrics"], [48, "module-pgmpy.models.BayesianNetwork"], [55, "module-pgmpy.models.NaiveBayes"], [65, "module-pgmpy.readwrite.BIF"], [67, "module-pgmpy.readwrite.UAI"], [68, "module-pgmpy.readwrite.XMLBeliefNetwork"], [69, "module-pgmpy.readwrite.XMLBIF"]], "pgmpy.inference.eliminationorder": [[25, "module-pgmpy.inference.EliminationOrder"]], "query() (pgmpy.inference.exactinference.variableelimination method)": [[25, "pgmpy.inference.ExactInference.VariableElimination.query"]], "correlation_score() (in module pgmpy.metrics.metrics)": [[46, "pgmpy.metrics.metrics.correlation_score"]], "fisher_c() (in module pgmpy.metrics.metrics)": [[46, "pgmpy.metrics.metrics.fisher_c"]], "implied_cis() (in module pgmpy.metrics.metrics)": [[46, "pgmpy.metrics.metrics.implied_cis"]], "log_likelihood_score() (in module pgmpy.metrics.metrics)": [[46, "pgmpy.metrics.metrics.log_likelihood_score"]], "pgmpy.metrics.metrics": [[46, "module-pgmpy.metrics.metrics"]], "structure_score() (in module pgmpy.metrics.metrics)": [[46, "pgmpy.metrics.metrics.structure_score"]], "bayesiannetwork (class in pgmpy.models.bayesiannetwork)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork"]], "add_cpds() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.add_cpds"]], "add_edge() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.add_edge"]], "check_model() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.check_model"]], "copy() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.copy"]], "do() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.do"]], "fit() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.fit"]], "fit_update() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.fit_update"]], "get_cardinality() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_cardinality"]], "get_cpds() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_cpds"]], "get_factorized_product() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_factorized_product"]], "get_markov_blanket() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_markov_blanket"]], "get_random() (pgmpy.models.bayesiannetwork.bayesiannetwork static method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_random"]], "get_random_cpds() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_random_cpds"]], "get_state_probability() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.get_state_probability"]], "is_imap() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.is_imap"]], "load() (pgmpy.models.bayesiannetwork.bayesiannetwork static method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.load"]], "pgmpy.models.bayesiannetwork": [[48, "module-pgmpy.models.BayesianNetwork"]], "predict() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.predict"]], "predict_probability() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.predict_probability"]], "remove_cpds() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.remove_cpds"]], "remove_node() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.remove_node"]], "remove_nodes_from() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.remove_nodes_from"]], "save() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.save"]], "simulate() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.simulate"]], "states (pgmpy.models.bayesiannetwork.bayesiannetwork property)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.states"]], "to_junction_tree() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.to_junction_tree"]], "to_markov_model() (pgmpy.models.bayesiannetwork.bayesiannetwork method)": [[48, "pgmpy.models.BayesianNetwork.BayesianNetwork.to_markov_model"]], "naivebayes (class in pgmpy.models.naivebayes)": [[55, "pgmpy.models.NaiveBayes.NaiveBayes"]], "active_trail_nodes() (pgmpy.models.naivebayes.naivebayes method)": [[55, "pgmpy.models.NaiveBayes.NaiveBayes.active_trail_nodes"]], "add_edge() (pgmpy.models.naivebayes.naivebayes method)": [[55, "pgmpy.models.NaiveBayes.NaiveBayes.add_edge"]], "add_edges_from() (pgmpy.models.naivebayes.naivebayes method)": [[55, "pgmpy.models.NaiveBayes.NaiveBayes.add_edges_from"]], "fit() (pgmpy.models.naivebayes.naivebayes method)": [[55, "pgmpy.models.NaiveBayes.NaiveBayes.fit"]], "local_independencies() (pgmpy.models.naivebayes.naivebayes method)": [[55, "pgmpy.models.NaiveBayes.NaiveBayes.local_independencies"]], "pgmpy.models.naivebayes": [[55, "module-pgmpy.models.NaiveBayes"]], "bifreader (class in pgmpy.readwrite.bif)": [[65, "pgmpy.readwrite.BIF.BIFReader"]], "bifwriter (class in pgmpy.readwrite.bif)": [[65, "pgmpy.readwrite.BIF.BIFWriter"]], "bif_templates() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.BIF_templates"]], "get_cpds() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.get_cpds"]], "get_edges() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_edges"]], "get_model() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_model"]], "get_network_name() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_network_name"]], "get_parents() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_parents"]], "get_parents() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.get_parents"]], "get_probability_grammar() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_probability_grammar"]], "get_properties() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.get_properties"]], "get_property() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_property"]], "get_states() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_states"]], "get_states() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.get_states"]], "get_values() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_values"]], "get_variable_grammar() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_variable_grammar"]], "get_variables() (pgmpy.readwrite.bif.bifreader method)": [[65, "pgmpy.readwrite.BIF.BIFReader.get_variables"]], "get_variables() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.get_variables"]], "pgmpy.readwrite.bif": [[65, "module-pgmpy.readwrite.BIF"]], "write_bif() (pgmpy.readwrite.bif.bifwriter method)": [[65, "pgmpy.readwrite.BIF.BIFWriter.write_bif"]], "uaireader (class in pgmpy.readwrite.uai)": [[67, "pgmpy.readwrite.UAI.UAIReader"]], "uaiwriter (class in pgmpy.readwrite.uai)": [[67, "pgmpy.readwrite.UAI.UAIWriter"]], "get_domain() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_domain"]], "get_domain() (pgmpy.readwrite.uai.uaiwriter method)": [[67, "pgmpy.readwrite.UAI.UAIWriter.get_domain"]], "get_edges() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_edges"]], "get_functions() (pgmpy.readwrite.uai.uaiwriter method)": [[67, "pgmpy.readwrite.UAI.UAIWriter.get_functions"]], "get_grammar() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_grammar"]], "get_model() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_model"]], "get_network_type() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_network_type"]], "get_nodes() (pgmpy.readwrite.uai.uaiwriter method)": [[67, "pgmpy.readwrite.UAI.UAIWriter.get_nodes"]], "get_tables() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_tables"]], "get_tables() (pgmpy.readwrite.uai.uaiwriter method)": [[67, "pgmpy.readwrite.UAI.UAIWriter.get_tables"]], "get_variables() (pgmpy.readwrite.uai.uaireader method)": [[67, "pgmpy.readwrite.UAI.UAIReader.get_variables"]], "pgmpy.readwrite.uai": [[67, "module-pgmpy.readwrite.UAI"]], "write_uai() (pgmpy.readwrite.uai.uaiwriter method)": [[67, "pgmpy.readwrite.UAI.UAIWriter.write_uai"]], "xbnreader (class in pgmpy.readwrite.xmlbeliefnetwork)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader"]], "xbnwriter (class in pgmpy.readwrite.xmlbeliefnetwork)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter"]], "get_analysisnotebook_values() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_analysisnotebook_values"]], "get_bnmodel_name() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_bnmodel_name"]], "get_distributions() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_distributions"]], "get_edges() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_edges"]], "get_model() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_model"]], "get_static_properties() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_static_properties"]], "get_variables() (pgmpy.readwrite.xmlbeliefnetwork.xbnreader method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNReader.get_variables"]], "indent() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.indent"]], "pgmpy.readwrite.xmlbeliefnetwork": [[68, "module-pgmpy.readwrite.XMLBeliefNetwork"]], "set_analysisnotebook() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.set_analysisnotebook"]], "set_bnmodel_name() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.set_bnmodel_name"]], "set_distributions() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.set_distributions"]], "set_edges() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.set_edges"]], "set_static_properties() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.set_static_properties"]], "set_variables() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.set_variables"]], "write_xbn() (pgmpy.readwrite.xmlbeliefnetwork.xbnwriter method)": [[68, "pgmpy.readwrite.XMLBeliefNetwork.XBNWriter.write_xbn"]], "xmlbifreader (class in pgmpy.readwrite.xmlbif)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader"]], "xmlbifwriter (class in pgmpy.readwrite.xmlbif)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter"]], "get_definition() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.get_definition"]], "get_edges() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_edges"]], "get_model() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_model"]], "get_parents() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_parents"]], "get_properties() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.get_properties"]], "get_property() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_property"]], "get_states() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_states"]], "get_states() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.get_states"]], "get_values() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_values"]], "get_values() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.get_values"]], "get_variables() (pgmpy.readwrite.xmlbif.xmlbifreader method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFReader.get_variables"]], "get_variables() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.get_variables"]], "indent() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.indent"]], "pgmpy.readwrite.xmlbif": [[69, "module-pgmpy.readwrite.XMLBIF"]], "write_xmlbif() (pgmpy.readwrite.xmlbif.xmlbifwriter method)": [[69, "pgmpy.readwrite.XMLBIF.XMLBIFWriter.write_xmlbif"]]}})