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@phasegenomics

Phase Genomics

Phase Genomics creates genomic and metagenomic technologies. Open source software is hosted on github

Popular repositories

  1. FALCON-Phase FALCON-Phase Public

    FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

    C 72 17

  2. juicebox_scripts juicebox_scripts Public

    A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats

    Python 62 10

  3. hic_qc hic_qc Public

    A (very) simple script to QC Hi-C data.

    Python 22 5

  4. matlock matlock Public

    Simple tools for working with Hi-C data

    C 15 1

  5. polar_star polar_star Public

    long-read depth breaking

    Python 11

  6. update_assembly update_assembly Public

    Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase

    Python 3 2

Repositories

Showing 10 of 10 repositories
  • phasegenomics.github.io Public

    Phase Genomics Software & Bioinformatics Documentation

    HTML 0 AGPL-3.0 0 0 0 Updated May 2, 2024
  • hic_qc Public

    A (very) simple script to QC Hi-C data.

    Python 22 AGPL-3.0 5 1 1 Updated Jul 6, 2023
  • proxiphage_paper Public
    TeX 0 0 0 0 Updated Jun 15, 2021
  • juicebox_scripts Public

    A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats

    Python 62 AGPL-3.0 10 3 0 Updated May 22, 2021
  • FALCON-Phase Public

    FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

    C 72 17 7 1 Updated Nov 12, 2020
  • update_assembly Public

    Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase

    Python 3 AGPL-3.0 2 0 0 Updated Feb 4, 2020
  • annotation_mover Public

    Script for porting annotations from one set of scaffolds (usually chromosome-scale scaffolds) to another set of scaffolds generated from the exact same set of contigs.

    Python 1 AGPL-3.0 0 1 0 Updated Jul 3, 2019
  • matlock Public

    Simple tools for working with Hi-C data

    C 15 AGPL-3.0 1 7 1 Updated Dec 19, 2018
  • polar_star Public

    long-read depth breaking

    Python 11 AGPL-3.0 0 6 0 Updated Apr 19, 2018
  • fungus_heatmap Public

    Repository containing an R script used in figure generation

    R 0 AGPL-3.0 0 0 0 Updated Feb 23, 2018

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