.gitignore

# Ignore files produced by the test suite
paper_as_owl.json
paper.owl

# Ignore Mac-specific files
.DS_Store

# Ignore libraries installed locally for JPhyloRef
jphyloref/lib/

#
# The following rules are based on Github's default .gitignore rules for Node.js
# from https://github.com/github/gitignore/blob/master/Node.gitignore
#

# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*

# Runtime data
pids
*.pid
*.seed
*.pid.lock

# Directory for instrumented libs generated by jscoverage/JSCover
lib-cov

# Coverage directory used by tools like istanbul
coverage

# nyc test coverage
.nyc_output

# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
.grunt

# Bower dependency directory (https://bower.io/)
bower_components

# node-waf configuration
.lock-wscript

# Compiled binary addons (https://nodejs.org/api/addons.html)
build/Release

# Dependency directories
node_modules/
jspm_packages/

# TypeScript v1 declaration files
typings/

# Optional npm cache directory
.npm

# Optional eslint cache
.eslintcache

# Optional REPL history
.node_repl_history

# Output of 'npm pack'
*.tgz

# Yarn Integrity file
.yarn-integrity

# dotenv environment variables file
.env

# parcel-bundler cache (https://parceljs.org/)
.cache

# next.js build output
.next

# nuxt.js build output
.nuxt

# vuepress build output
.vuepress/dist

# Serverless directories
.serverless

# FuseBox cache
.fusebox/

#
# The following rules are based on Github's .gitignore rules for Python.
w
#

# Ignore files produced by pytest
.pytest_cache/

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# dotenv
.env

# virtualenv
.venv
venv/
ENV/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/

# PyCharm
.idea/