index.rst

DBGen - General purpose database for genomic data analysis

DBGen is a python package providing a general purpose database to support genomic data analysis studies.

The current implementation is based on mongoDB.

Quick start

You can install DBGen along with all its dependencies from PyPI:

$ pip install -r requirements.txt dbgen

Source

The source code and minimal working examples can be found on GitHub.

.. toctree::
    :caption: User Guide
    :maxdepth: 2

    user_guide/installation
    user_guide/tutorial
    user_guide/contributing
    user_guide/running_tests

.. toctree::
    :caption: API Reference
    :maxdepth: 2

    modules/dbgen
    modules/tables/species
    modules/tables/dataset
    modules/tables/sample
    modules/tables/phenotype
    modules/tables/result

.. toctree::
    :caption: Copyright
    :maxdepth: 1

    user_guide/authors
    user_guide/licence

Indices and tables

• :ref:`genindex`
• :ref:`modindex`
• :ref:`search`