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tax-treatment-NS0-v1.dtd
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tax-treatment-NS0-v1.dtd
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<!-- ============================================================= -->
<!-- =============================================================
This DTD is a modification of the orignal TaxPub DTD extension to the
NLM Journal Publishing DTD version 3.0 created in September 2008.
This is version 1.0-alpha and should be considered a pre-release version.
This version was created on December 22, 2017.
Donat Agosti, Terry Catapano, Lyubomir Penev, Bob Morris, Scott Federhen,
Laura Kelly, Jeff Beck.
-->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//TaxPub//DTD Taxonomic Treatment Publishing DTD v1.0 20180101//EN"
Delivered as file "tax-treatment.dtd" -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- MODULES OF MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
<!-- Names all DTD-specific external modules -->
<!--
<!ENTITY % journalpubcustom-modules.ent
PUBLIC
"-//NLM//DTD JATS (Z39.96) Journal Publishing DTD-Specific Modules v1.1 20151215//EN"
"JATS-journalpubcustom-modules1.ent" >
%journalpubcustom-modules.ent;
-->
<!ENTITY % taxpubcustom-modules.ent
PUBLIC
"//TaxPub//DTD Taxonomic Treatment DTD-Specific Modules v1.0 20180101//EN"
"taxpubcustom-modules-NS0-v1.ent" >
%taxpubcustom-modules.ent;
<!-- MODULE TO NAME THE MATHML 3.0 MODULES -->
<!-- Names all DTD-specific external modules -->
<!ENTITY % mathml3-modules.ent
PUBLIC
"-//NLM//DTD JATS (Z39.96) JATS MathML 3.0 Modules v1.1 20151215//EN"
"JATS-mathml3-modules1.ent" >
%mathml3-modules.ent;
<!-- MODULE TO NAME THE MODULES -->
<!-- Declares all the external modules that are
part of the modular Journal Archiving and
Interchange DTD Suite library. Thus it does
NOT declare itself; the DTD-specific
module-of-modules; or the DTD-specific class,
mix, or model over-ride modules. Those are
declared in the DTD-specific module of modules.
Since this module declares but does not
invoke modules, this DTD invokes any modules
it uses by referencing the external
Parameter Entities defined in the Module of
Modules. To include a set of elements (such
as all the lists or the table elements) this
module defines the external Parameter Entity
for the module(s) that contains the table
declarations and the DTD references that
entity. -->
<!ENTITY % modules.ent PUBLIC
"-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.1 20151215//EN"
"JATS-modules1.ent" >
%modules.ent;
<!-- ============================================================= -->
<!-- NISO ALI NAMESPACE SETUP -->
<!-- ============================================================= -->
<!-- DEFINE ALI NAMESPACE ATTRIBUTE AND PREFIX -->
<!-- Names the module defines the NISO Access and
Indicators Exchange Model namespace, prefix,
and pseudo-attribute @xmlns. -->
%JATS-ali-namespace.ent;
<!-- ============================================================= -->
<!-- SET UP COMMON (ALL ELEMENT) ATTRIBUTES -->
<!-- ============================================================= -->
<!-- COMMON ATTRIBUTES MODULE -->
<!-- Set up the common attributes, those used on
nearly all elements.
Must be called before the custom models
module. -->
%JATS-common-atts.ent;
<!-- ============================================================= -->
<!-- CUSTOMIZATION MODULES INVOKED -->
<!-- Note: These modules must be called after -->
<!-- all Module of Modules but before any other -->
<!-- modules. Unlike any other grouping, order -->
<!-- of these modules matters. -->
<!-- ============================================================= -->
<!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the DTD-specific
class definitions for the Journal Publishing
DTD that will over-ride classes in the Suite.
(Defined in %journalpubcustom-modules.ent;)-->
<!-- %journalpubcustom-classes.ent; -->
%taxpubcustom-classes.ent;
<!-- DEFAULT ELEMENT CLASSES MODULE -->
<!-- Names the module that holds the standard
class definitions for the JATS DTD Suite. -->
%default-classes.ent;
<!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
<!-- Set up the Parameter Entities and element
class definitions that will be used to
over-ride some element mixes in this DTD.
(Defined in %journalpubcustom-modules.ent;)-->
<!-- %journalpubcustom-mixes.ent; -->
%taxpubcustom-mixes.ent;
<!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the standard
mix definitions for the JATS DTD Suite. -->
%default-mixes.ent;
<!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
MODULE -->
<!-- Names the module that holds the over-rides
of content models, attribute lists, elements
lists to be used in content models, and
attribute values. These are DTD-specific.
(Defined in %journalpubcustom-modules.ent;)-->
<!-- %journalpubcustom-models.ent; -->
%taxpubcustom-models.ent;
<!-- ============================================================= -->
<!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
<!-- ============================================================= -->
<!-- COMMON (SHARED) DECLARATIONS -->
<!-- Declarations for elements, attributes,
entities, and Notations that are shared by
more than one class module. Note: Must be
called before any of the class modules. -->
%common.ent;
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
<!-- ============================================================= -->
<!-- TAXONOMIC TREATMENT ELEMENTS -->
%taxpubcustom-elements.ent;
<!-- ARTICLE METADATA ELEMENTS -->
%articlemeta.ent;
<!-- BACK MATTER ELEMENTS -->
%backmatter.ent;
<!-- DISPLAY (GRAPHICAL) ELEMENTS -->
%display.ent;
<!-- FORMATTING ELEMENT CLASSES -->
<!-- Elements that change rendition/display. -->
%format.ent;
<!-- FUNDING ELEMENTS -->
<!-- Elements that describe the sponsorship or
open access -->
%funding.ent;
<!-- JOURNAL METADATA ELEMENTS -->
%journalmeta.ent;
<!-- LINK CLASS ELEMENTS -->
%link.ent;
<!-- LIST CLASS ELEMENTS -->
%list.ent;
<!-- MATH ELEMENTS -->
%math.ent;
<!-- NLM CITATION ELEMENT -->
%nlmcitation.ent;
<!-- PARAGRAPH-LEVEL ELEMENTS -->
%para.ent;
<!-- PHRASE-LEVEL ELEMENTS -->
%phrase.ent;
<!-- BIBLIOGRAPHIC REFERENCE (CITATION)
CLASS ELEMENTS -->
%references.ent;
<!-- RELATED OBJECT ELEMENT -->
<!-- Defines the <related-object> element to
describe a related object such as a
related book or a dataset. -->
%related-object.ent;
<!-- SECTION ELEMENTS -->
%section.ent;
<!-- ============================================================= -->
<!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MATHML SETUP MODULE -->
<!-- Invoke the MathML modules -->
%mathml3-mathmlsetup.ent;
<!-- XHTML TABLE SETUP MODULE -->
<!-- Set up the necessary Parameter Entity values
and then invoke XHTML (HTML 4.0) table
module -->
%XHTMLtablesetup.ent;
<!-- SPECIAL CHARACTERS DECLARATIONS -->
<!-- Standard XML special character entities
used in this DTD -->
%xmlspecchars.ent;
<!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
<!-- Custom special character entities created
specifically for use in this DTD Suite -->
%chars.ent;
<!-- NOTATION DECLARATIONS MODULE -->
%notat.ent;
<!-- ============================================================= -->
<!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
<!-- ============================================================= -->
<!-- DTD VERSION -->
<!-- What version of this DTD was used to make
the document instance under consideration.
Note that this is a fixed value that should
change every time the DTD changes versions or
revisions. -->
<!ENTITY % dtd-version
"dtd-version
CDATA #FIXED '1.1'" >
<!-- ARTICLE ATTRIBUTES -->
<!-- Attributes for the top-level element
<article> -->
<!ENTITY % article-atts
"%jats-common-atts;
article-type
CDATA #IMPLIED
%dtd-version;
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN 'en'
%XLINK.xmlns.attrib;
%MATHML.xmlns.attrib;
%ali.xmlns.attrib;
%Schema.xmlns.attrib;
%taxpub-namespace-att;" >
<!-- BACK ATTRIBUTES -->
<!-- Attributes for the <back> element -->
<!ENTITY % back-atts
"%jats-common-atts;" >
<!-- BODY ATTRIBUTES -->
<!-- Attributes for the <body> element -->
<!ENTITY % body-atts
"%jats-common-atts;
specific-use
CDATA #IMPLIED" >
<!-- FRONT ATTRIBUTES -->
<!-- Attributes for the <front> element -->
<!ENTITY % front-atts
"%jats-common-atts;" >
<!-- FRONT STUB ATTRIBUTES -->
<!-- Attributes for the <front-stub> element -->
<!ENTITY % front-stub-atts
"%jats-common-atts;" >
<!-- SUB-ARTICLE ATTRIBUTES -->
<!-- Attributes for the <sub-article> element -->
<!ENTITY % sub-article-atts
"%jats-common-atts;
article-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN #IMPLIED" >
<!-- RESPONSE ATTRIBUTES -->
<!-- Attributes for the <response> element -->
<!ENTITY % response-atts
"%jats-common-atts;
response-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN #IMPLIED" >
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE ELEMENTS -->
<!-- ============================================================= -->
<!-- ARTICLE MODEL (LIMITED) -->
<!-- Article-like model used for, for example,
a short sub-article such as a news brief that
is contained in side a journal article.
-->
<!ENTITY % article-short-model
"((front | front-stub), body?, back?,
floats-group?)" >
<!-- ARTICLE MODEL WITH SUB-ARTICLE OR RESPONSE -->
<!-- Typical journal article model, which may
contain extended components, such as
sub-articles or responses, but which usually
contains neither.
-->
<!ENTITY % article-full-model
"(front, body?, back?, floats-group?,
(sub-article* | response*) )" >
<!-- ARTICLE -->
<!-- The complete content of a journal article.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=article
-->
<!ELEMENT article %article-full-model; >
<!ATTLIST article
%article-atts; >
<!-- ============================================================= -->
<!-- FRONT MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- FRONT MATTER MODEL -->
<!-- Model for the <front> matter (the header
metadata) of a journal article) -->
<!ENTITY % front-model "(journal-meta, article-meta,
(%front-back.class;)? )" >
<!-- FRONT MATTER -->
<!-- The metadata concerning an article, such as
the name and issue of the journal in which it
appears and the name and author(s) of the
article.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=front
-->
<!ELEMENT front %front-model; >
<!ATTLIST front
%front-atts; >
<!-- ============================================================= -->
<!-- BODY ELEMENTS -->
<!-- ============================================================= -->
<!-- BODY MODEL -->
<!-- Content model for the Body (main textual
content) of a journal article. -->
<!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
sig-block?)" >
<!-- BODY OF THE ARTICLE -->
<!-- The main textual portion of the article that
conveys the content.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=body
-->
<!ELEMENT body %body-model; >
<!ATTLIST body
%body-atts; >
<!-- ============================================================= -->
<!-- BACK MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- BACK MATTER MODEL -->
<!-- Content model for the Back Matter (ancillary
material such as appendices) of a journal
article. -->
<!ENTITY % back-model "(label?, title*, (%doc-back-matter-mix;)* )">
<!-- BACK MATTER -->
<!-- Ancillary or supporting material not included
as part of the main textual content of a
journal article, for example appendices and
acknowledgments.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=back
-->
<!ELEMENT back %back-model; >
<!ATTLIST back
%back-atts; >
<!-- ============================================================= -->
<!-- SUB-ARTICLE -->
<!-- ============================================================= -->
<!-- SUB-ARTICLE MODEL -->
<!-- Content model for the <sub-article> element
-->
<!ENTITY % sub-article-model
"((front | front-stub), body?, back?,
floats-group?,
(sub-article* | response*) )" >
<!-- SUB-ARTICLE -->
<!-- An article that is completely contained
inside another article. Both the article and
the sub-article have their own metadata.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=sub-article
-->
<!ELEMENT sub-article %sub-article-model; >
<!ATTLIST sub-article
%sub-article-atts; >
<!-- FRONT MODEL STUB -->
<!-- Content model for the <front-stub> element,
a reduced metadata set for use in
sub-articles and responses -->
<!ENTITY % front-stub-model
"(article-id*, article-categories?,
title-group?,
( %contrib-group.class; |
%aff-alternatives.class;)*,
author-notes?, pub-date*,
volume*, volume-id*, volume-series?,
issue*, issue-id*, issue-title*,
issue-sponsor*, issue-part?,
volume-issue-group*, isbn*,
supplement?,
( (fpage, lpage?, page-range?) |
elocation-id)?,
( %address-link.class; | product |
supplementary-material)*,
history?, permissions?, self-uri*,
(%related-article.class;)*,
(%abstract.class;)*, trans-abstract*,
(%kwd-group.class;)*,
funding-group*, conference*, counts?,
custom-meta-group?)" >
<!-- STUB FRONT METADATA -->
<!-- A reduced metadata set for use in
sub-articles and responses, which will
inherit metadata not defined in the stub
from the enclosing article
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=front-stub
-->
<!ELEMENT front-stub %front-stub-model; >
<!ATTLIST front-stub
%front-stub-atts; >
<!-- ============================================================= -->
<!-- RESPONSE ELEMENTS -->
<!-- ============================================================= -->
<!-- RESPONSE -->
<!-- Reply, response, or commentary concerning the
journal article. In the typical case, the
response is included in the same XML package
as the original article, and thus attached
at the end of the article proper.
Details at:
http://jats.nlm.nih.gov/publishing/tag-library/1.1/index.html?elem=response
-->
<!ELEMENT response %article-short-model; >
<!ATTLIST response
%response-atts; >
<!-- ================== End Journal Publishing DTD =============== -->