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index.Rmd
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---
title: "Workflowr page for catchSalmon/catchKallisto paper"
site: workflowr::wflow_site
output:
workflowr::wflow_html:
toc: false
editor_options:
chunk_output_type: console
---
This website hosts code for the transcript-level differential expression paper, which presents the methodology implemented in functions `catchSalmon` and `catchKallisto` from the R/Bioconductor package [edgeR](https://bioconductor.org/packages/release/bioc/html/edgeR.html).
## Simulation study
* [Complete report (results presented in the supplementary materials)](simulation-complete.html)
* [Reduced report (results presented in the main paper)](simulation-paper.html)
## Analysis of the RNA-seq data from the epithelial cell population of the mouse mammary gland
* [Report](mouse.html)