ci-unit-linux.yml

on:
  push:
    branches:
      - master
      - 'dev/**'
    tags:
      - '[0-9]+.[0-9]+.[0-9]+'
  pull_request:

name: Linux unit test

jobs:
  linux:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.8', '3.9', '3.10']
    
    services:
      postgres:
        image: postgres
        env:
          POSTGRES_PASSWORD: postgres
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
        ports:
          - 5432:5432
    steps:
    - uses: actions/checkout@v2

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}

    - name: Set up R
      uses: r-lib/actions/setup-r@v2

    - name: Config
      run: |
        conda create -q -n conda-env python=${{ matrix.python-version }} -c conda-forge
        # for the tests that depend on git repos
        git config --global user.email "someone@example.com"
        git config --global user.name "Someone"

    - name: Install dependencies
      run: |
        eval "$(conda shell.bash hook)"
        conda activate conda-env

        # upgrade pip to use the most recent resolver
        pip install pip --upgrade

        # make the build fail quickly on linting errors
        pip install pkgmt
        pkgmt lint

        # for some reason, conda does not resolve the env correctly and
        # installs and old version of pygraphviz (1.3) which breaks in
        # Python 3.7
        conda install -y "pygraphviz>=1.6" -c conda-forge

        # Test vanilla installation, make sure core modules are importable
        pip install .
        python -c 'import ploomber'
        python -c 'import ploomber.tasks'
        python -c 'import ploomber.products'
        python -c 'import ploomber.clients'
        python -c 'import ploomber.io'

        # install dev requirements
        pip install .[dev]

        # install IR kernel
        echo "install.packages('IRkernel', repos='http://cran.us.r-project.org'); IRkernel::installspec()" | Rscript -

        # install sample package for tests
        pip install --editable tests/assets/test_pkg
    - name: Run tests
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        PLOOMBER_STATS_ENABLED: false
      run: |
        eval "$(conda shell.bash hook)"
        conda activate conda-env

        # doc tests
        export PY_IGNORE_IMPORTMISMATCH=1
        pytest src/ploomber --doctest-modules --ignore src/ploomber/resources
        unset PY_IGNORE_IMPORTMISMATCH

        # run tests
        pip install pytest-timeout
        pytest tests --cov=ploomber --timeout=120


  # run: pkgmt check
  check:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: '3.10'

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install 'pkgmt[check]'
      - name: Check project
        run: |
          pkgmt check

  broken-links:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: '3.10'

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install pkgmt
      - name: Check for broken links
        run: |
          pkgmt check-links --only-404